Wall clock time and date at job start Tue Mar 31 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 C 1.53004 * 109.46980 * 120.00019 * 2 1 3 5 5 O 1.42894 * 109.46897 * 175.00128 * 4 2 1 6 6 C 1.42902 * 113.99908 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47573 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47549 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00116 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00378 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62797 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77933 * 233.61094 * 11 10 8 13 13 C 1.53039 * 109.31352 * 305.37066 * 12 11 10 14 14 C 1.53036 * 109.53822 * 61.35882 * 13 12 11 15 15 H 1.08998 * 109.49783 * 58.59132 * 14 13 12 16 16 C 1.50710 * 109.49741 * 178.65236 * 14 13 12 17 17 H 1.07996 * 119.99643 * 35.12334 * 16 14 13 18 18 C 1.37875 * 120.00082 * 215.12694 * 16 14 13 19 19 N 1.31516 * 120.00081 * 184.98615 * 18 16 14 20 20 Si 1.86800 * 119.99906 * 4.98156 * 18 16 14 21 21 H 1.48504 * 109.47179 * 84.79390 * 20 18 16 22 22 H 1.48504 * 109.47032 * 204.79189 * 20 18 16 23 23 H 1.48501 * 109.47490 * 324.79335 * 20 18 16 24 24 C 1.46925 * 120.63311 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.47747 * 300.00239 * 1 2 3 26 26 H 1.09003 * 109.47072 * 60.00349 * 1 2 3 27 27 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47029 * 239.99931 * 2 1 3 29 29 H 1.09001 * 109.47279 * 60.00084 * 3 2 1 30 30 H 1.09001 * 109.46804 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46917 * 299.99746 * 3 2 1 32 32 H 1.08998 * 109.47008 * 55.00013 * 4 2 1 33 33 H 1.09003 * 109.46684 * 295.00298 * 4 2 1 34 34 H 1.09009 * 109.46962 * 59.99642 * 6 5 4 35 35 H 1.08998 * 109.47439 * 300.00415 * 6 5 4 36 36 H 1.08996 * 109.46813 * 60.00007 * 7 6 5 37 37 H 1.09005 * 109.46972 * 300.00636 * 7 6 5 38 38 H 1.09009 * 109.58452 * 113.82538 * 11 10 8 39 39 H 1.08998 * 109.58489 * 353.40413 * 11 10 8 40 40 H 1.08999 * 109.49787 * 185.41427 * 12 11 10 41 41 H 1.08997 * 109.49158 * 65.31585 * 12 11 10 42 42 H 1.09009 * 109.45370 * 301.34300 * 13 12 11 43 43 H 1.08993 * 109.46020 * 181.38329 * 13 12 11 44 44 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58707 * 6.59644 * 24 10 8 46 46 H 1.09006 * 109.58572 * 246.17314 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 3.4641 -0.8238 1.1920 6 6 4.0449 -1.4846 2.3181 7 6 5.5648 -1.5374 2.1505 8 6 6.1773 -2.2348 3.3376 9 8 5.4680 -2.6493 4.2298 10 7 7.5133 -2.3979 3.4080 11 6 8.3855 -1.9016 2.3348 12 6 9.2711 -3.0527 1.8472 13 6 10.0201 -3.6546 3.0383 14 6 9.0136 -4.2132 4.0466 15 1 8.3944 -4.9683 3.5623 16 6 9.7527 -4.8352 5.2034 17 1 10.6795 -4.4010 5.5481 18 6 9.2459 -5.9587 5.8214 19 7 9.8372 -6.4440 6.8911 20 14 7.7191 -6.7913 5.1393 21 1 8.1092 -7.7310 4.0576 22 1 7.0376 -7.5414 6.2247 23 1 6.7968 -5.7635 4.5932 24 6 8.1250 -3.0762 4.5588 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1583 2.1370 34 1 3.6518 -2.4990 2.3867 35 1 3.7981 -0.9372 3.2278 36 1 5.9581 -0.5232 2.0817 37 1 5.8112 -2.0850 1.2408 38 1 9.0118 -1.0952 2.7165 39 1 7.7761 -1.5343 1.5091 40 1 9.9889 -2.6759 1.1186 41 1 8.6494 -3.8186 1.3837 42 1 10.6225 -2.8820 3.5164 43 1 10.6696 -4.4578 2.6904 44 1 9.4804 -7.2342 7.3261 45 1 7.3438 -3.4838 5.2004 46 1 8.7300 -2.3659 5.1224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:36 Heat of formation + Delta-G solvation = -112.556392 kcal Electronic energy + Delta-G solvation = -22799.832606 eV Core-core repulsion = 19495.399017 eV Total energy + Delta-G solvation = -3304.433589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83119 -38.41795 -36.98420 -35.34415 -33.45377 -31.98206 -31.44564 -30.30881 -27.44577 -26.43285 -25.24723 -24.99154 -22.87200 -21.87248 -20.55603 -19.60334 -18.44676 -17.38865 -16.78377 -16.52893 -16.08795 -15.34526 -15.31585 -14.87587 -14.48331 -14.18801 -13.85745 -13.51285 -13.43299 -13.11145 -12.92916 -12.77160 -12.53945 -12.47394 -12.38252 -12.17591 -11.60280 -11.54207 -11.33186 -11.17401 -11.05485 -10.99221 -10.82520 -10.73960 -10.54764 -10.07263 -9.72271 -9.69597 -9.65555 -9.29806 -9.09184 -8.58511 -8.06587 -6.12353 -4.13284 2.95593 3.14186 3.30818 3.40142 3.48189 3.77263 4.41986 4.56107 4.61205 4.76449 4.82228 5.00515 5.07708 5.18418 5.20393 5.22133 5.24123 5.31977 5.35369 5.43667 5.49164 5.54796 5.56309 5.64836 5.73355 5.77770 5.80894 5.84700 5.99405 6.01096 6.05990 6.14806 6.27834 6.42235 6.60559 6.66955 6.78737 6.90822 7.07144 7.25673 7.35109 7.71566 7.88096 8.45373 8.56165 8.92785 9.51097 11.00126 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.003412 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.174642 B = 8203.513702 C = 8889.372825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.067 3.933 5 O -0.391 6.391 6 C 0.079 3.921 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.550 6.550 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.138 4.138 13 C -0.105 4.105 14 C 0.005 3.995 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.895 5.895 20 Si 0.872 3.128 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.260 1.260 24 C 0.113 3.887 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.265 0.735 45 H 0.082 0.918 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 13.764 -15.257 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.010 4.010 5 O -0.310 6.310 6 C 0.002 3.998 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.429 6.429 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.176 4.176 13 C -0.143 4.143 14 C -0.014 4.014 15 H 0.052 0.948 16 C -0.552 4.552 17 H 0.093 0.907 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.184 1.184 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.983 13.468 -14.769 23.834 hybrid contribution -0.818 -0.692 -0.043 1.073 sum -13.801 12.775 -14.812 23.939 Atomic orbital electron populations 1.21791 0.94403 1.02023 1.02181 1.21103 0.95404 0.96951 0.97951 1.21788 1.02001 0.95062 1.01304 1.22552 0.81202 0.99251 0.97952 1.87769 1.19989 1.79353 1.43927 1.22125 0.92188 0.97150 0.88337 1.21492 0.95106 1.02667 0.98457 1.20311 0.82498 0.79921 0.87538 1.90691 1.60553 1.50900 1.40707 1.48493 1.05341 1.57189 1.22956 1.21725 0.93299 0.96748 0.89766 1.22012 0.98739 0.97783 0.99096 1.21581 0.98355 0.99645 0.94724 1.19460 0.93440 0.93301 0.95239 0.94792 1.20890 1.09004 1.11218 1.14127 0.90665 1.25077 0.96536 0.96868 0.94275 1.69900 1.40859 1.23372 1.19110 0.86914 0.84096 0.80135 0.78912 1.20262 1.21475 1.18400 1.22418 0.96844 0.94965 0.86507 0.92492 0.92053 0.92493 0.90389 0.92920 0.91775 0.92897 0.93368 0.93328 0.92510 0.92492 0.88424 0.88388 0.91505 0.90588 0.91657 0.92143 0.92717 0.92173 0.92514 0.89995 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.61 16 2 C -0.10 -0.78 3.16 -90.62 -0.29 -1.07 16 3 C -0.14 -1.14 9.09 37.16 0.34 -0.80 16 4 C 0.07 0.67 5.32 37.16 0.20 0.86 16 5 O -0.39 -4.74 9.88 -35.23 -0.35 -5.09 16 6 C 0.08 1.04 5.23 37.16 0.19 1.23 16 7 C -0.14 -1.79 4.42 -27.89 -0.12 -1.91 16 8 C 0.51 9.10 7.70 -10.99 -0.08 9.01 16 9 O -0.55 -12.04 15.40 5.55 0.09 -11.96 16 10 N -0.61 -10.85 2.97 -172.81 -0.51 -11.36 16 11 C 0.11 1.47 6.34 -3.71 -0.02 1.44 16 12 C -0.14 -2.00 6.08 -26.61 -0.16 -2.17 16 13 C -0.11 -1.96 5.15 -26.69 -0.14 -2.10 16 14 C 0.01 0.12 1.91 -91.69 -0.18 -0.05 16 15 H 0.03 0.82 5.28 -51.93 -0.27 0.55 16 16 C -0.51 -14.08 8.87 -34.44 -0.31 -14.38 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 19 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 20 Si 0.87 22.20 26.99 -169.99 -4.59 17.62 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.68 6.82 56.52 0.39 -6.30 16 24 C 0.11 2.46 5.70 -3.75 -0.02 2.44 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.80 8.10 -51.92 -0.42 0.38 16 35 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.10 1.08 7.94 -51.93 -0.41 0.67 16 37 H 0.10 1.15 7.69 -51.93 -0.40 0.75 16 38 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 2.02 7.01 -51.93 -0.36 1.66 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -32.07 362.08 -7.98 -40.04 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.50 Total: -2.21 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.35 Total: -6.04 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.26 Total: -37.82 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.26 Total: -17.04 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.59 Total: 17.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.07 -7.98 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.512 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds