Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 C 1.53000 * 109.47471 * 181.28575 * 3 2 1 5 5 H 1.09002 * 109.47061 * 306.48927 * 4 3 2 6 6 O 1.42901 * 109.46937 * 66.48396 * 4 3 2 7 7 C 1.42900 * 113.99875 * 265.63280 * 6 4 3 8 8 C 1.53008 * 109.47119 * 184.48674 * 7 6 4 9 9 C 1.50693 * 109.47363 * 186.48330 * 4 3 2 10 10 O 1.21276 * 120.00346 * 249.32900 * 9 4 3 11 11 N 1.34778 * 119.99923 * 69.33069 * 9 4 3 12 12 C 1.46497 * 120.00318 * 184.14830 * 11 9 4 13 13 C 1.50697 * 109.47239 * 89.99780 * 12 11 9 14 14 H 1.08005 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00173 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99930 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99954 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46740 * 90.00312 * 17 15 13 19 19 H 1.48504 * 109.47400 * 209.99907 * 17 15 13 20 20 H 1.48502 * 109.47369 * 330.00582 * 17 15 13 21 21 C 1.46499 * 119.99908 * 4.15069 * 11 9 4 22 22 C 1.52996 * 109.47430 * 91.82314 * 21 11 9 23 23 C 1.53010 * 117.49715 * 243.74938 * 22 21 11 24 24 C 1.53005 * 117.50152 * 175.08968 * 22 21 11 25 25 H 1.09002 * 109.46588 * 299.99733 * 1 2 3 26 26 H 1.08996 * 109.47792 * 59.99638 * 1 2 3 27 27 H 1.09004 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46588 * 240.00267 * 2 1 3 29 29 H 1.08996 * 109.47792 * 120.00362 * 2 1 3 30 30 H 1.08993 * 109.47515 * 61.27942 * 3 2 1 31 31 H 1.09009 * 109.46885 * 301.28504 * 3 2 1 32 32 H 1.08998 * 109.47833 * 304.48304 * 7 6 4 33 33 H 1.09003 * 109.47521 * 64.48563 * 7 6 4 34 34 H 1.08993 * 109.47059 * 59.99663 * 8 7 6 35 35 H 1.08996 * 109.46937 * 180.02562 * 8 7 6 36 36 H 1.09007 * 109.46693 * 299.99886 * 8 7 6 37 37 H 1.09001 * 109.47453 * 210.00288 * 12 11 9 38 38 H 1.09009 * 109.47079 * 330.00313 * 12 11 9 39 39 H 0.97005 * 119.99353 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.47378 * 211.82236 * 21 11 9 41 41 H 1.09000 * 109.47082 * 331.82176 * 21 11 9 42 42 H 1.08991 * 115.55060 * 29.41155 * 22 21 11 43 43 H 1.09003 * 117.50023 * 359.97438 * 23 22 21 44 44 H 1.08992 * 117.49903 * 145.01966 * 23 22 21 45 45 H 1.08994 * 117.49597 * 214.97674 * 24 22 21 46 46 H 1.09002 * 117.49691 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4427 -0.0324 5 1 3.9504 0.8254 0.7814 6 8 4.0197 0.9144 -1.2816 7 6 4.3080 -0.4849 -1.2508 8 6 4.8842 -0.9167 -2.6009 9 6 4.0754 2.8531 0.1279 10 8 4.6074 3.4163 -0.8051 11 7 3.9365 3.4887 1.3083 12 6 4.3450 4.8895 1.4385 13 6 3.1800 5.7856 1.1056 14 1 2.2301 5.3548 0.8255 15 6 3.3268 7.1555 1.1587 16 7 2.3099 7.9375 0.8686 17 14 4.9695 7.9008 1.6438 18 1 5.7972 8.1083 0.4284 19 1 4.7421 9.2051 2.3164 20 1 5.6754 6.9815 2.5722 21 6 3.3769 2.7788 2.4611 22 6 4.5111 2.1476 3.2711 23 6 4.5464 0.6209 3.3665 24 6 4.1410 1.4551 4.5843 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6956 1.9497 0.9012 31 1 1.6580 1.9629 -0.8783 32 1 5.0341 -0.6892 -0.4639 33 1 3.3915 -1.0405 -1.0525 34 1 5.8007 -0.3611 -2.7991 35 1 5.1037 -1.9841 -2.5775 36 1 4.1581 -0.7125 -3.3878 37 1 4.6692 5.0799 2.4616 38 1 5.1676 5.0934 0.7529 39 1 2.4131 8.9013 0.9063 40 1 2.8290 3.4810 3.0894 41 1 2.7004 1.9979 2.1136 42 1 5.4660 2.6714 3.2300 43 1 3.7613 0.0662 2.8525 44 1 5.5244 0.1405 3.3886 45 1 4.8527 1.5231 5.4070 46 1 3.0895 1.4496 4.8714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599325941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = -61.382458 kcal Electronic energy + Delta-G solvation = -23984.928161 eV Core-core repulsion = 20682.713641 eV Total energy + Delta-G solvation = -3302.214520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.88347 -37.84372 -37.11309 -34.76435 -34.32897 -32.47828 -31.55633 -29.49146 -28.02046 -26.40996 -24.52197 -22.91332 -22.36838 -21.92973 -21.25204 -20.60933 -18.65224 -17.14739 -16.84262 -16.63600 -15.98696 -15.15252 -15.03709 -14.91822 -14.52467 -14.10944 -14.03690 -13.38640 -13.12297 -13.08034 -12.83461 -12.49300 -12.43115 -12.07260 -12.03627 -11.87793 -11.63287 -11.50692 -11.49065 -11.15338 -11.07718 -11.03313 -10.88737 -10.60522 -10.47160 -10.30390 -10.11294 -9.88917 -9.51851 -9.48088 -8.72441 -8.56883 -7.72347 -6.07073 -4.05666 3.28073 3.30508 3.34835 3.38292 3.41018 3.79920 4.16796 4.41503 4.73024 4.80046 4.86131 4.92631 4.93284 5.02454 5.07371 5.15235 5.22649 5.27996 5.31751 5.35554 5.39882 5.53577 5.58589 5.61910 5.70408 5.76394 5.81370 5.86849 5.88265 5.90890 6.00384 6.08535 6.09046 6.13014 6.23356 6.29356 6.44051 6.69957 6.96457 7.24017 7.40675 7.62866 8.24731 8.48665 8.94656 9.01276 9.53443 11.06239 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.005533 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.168875 B = 5059.078889 C = 5509.353656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.143 4.143 4 C 0.075 3.925 5 H 0.081 0.919 6 O -0.354 6.354 7 C 0.046 3.954 8 C -0.150 4.150 9 C 0.511 3.489 10 O -0.520 6.520 11 N -0.588 5.588 12 C 0.216 3.784 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.130 3.870 22 C -0.168 4.168 23 C -0.187 4.187 24 C -0.173 4.173 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -20.137 3.968 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.181 4.181 4 C 0.014 3.986 5 H 0.099 0.901 6 O -0.272 6.272 7 C -0.031 4.031 8 C -0.208 4.208 9 C 0.297 3.703 10 O -0.395 6.395 11 N -0.321 5.321 12 C 0.096 3.904 13 C -0.567 4.567 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C 0.006 3.994 22 C -0.187 4.187 23 C -0.224 4.224 24 C -0.211 4.211 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.385 -19.497 3.260 19.816 hybrid contribution 0.739 0.397 0.582 1.021 sum 2.123 -19.100 3.842 19.598 Atomic orbital electron populations 1.21758 0.95467 1.01339 1.02310 1.21730 0.96396 0.96502 1.01905 1.22232 0.93633 0.97747 1.04461 1.22029 0.94725 0.94186 0.87673 0.90143 1.88064 1.86445 1.22280 1.30447 1.22784 0.98941 0.82880 0.98480 1.21725 1.02002 1.00521 0.96518 1.20135 0.79966 0.87133 0.83078 1.90673 1.42440 1.67352 1.39052 1.47780 1.62418 1.13263 1.08629 1.19671 0.97017 0.76745 0.96954 1.21328 0.97861 0.90646 1.46850 0.90689 1.24840 0.96471 0.96941 0.94666 1.69901 1.30613 1.04180 1.48878 0.86868 0.84673 0.78900 0.79357 1.19901 1.21092 1.19065 1.21314 0.93444 0.96708 0.87964 1.22959 1.01904 0.94253 0.99633 1.23072 1.02648 0.93896 1.02828 1.22910 1.02259 1.04337 0.91576 0.92540 0.92464 0.92907 0.91165 0.92269 0.89646 0.90078 0.93681 0.92630 0.91755 0.91398 0.91803 0.95101 0.94509 0.92587 0.89122 0.90299 0.87432 0.88973 0.89104 0.88909 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.37 5.20 -26.73 -0.14 -1.51 16 3 C -0.14 -2.06 4.47 -26.73 -0.12 -2.18 16 4 C 0.08 1.22 1.86 -27.89 -0.05 1.17 16 5 H 0.08 1.09 5.70 -51.93 -0.30 0.80 16 6 O -0.35 -5.99 9.43 -54.97 -0.52 -6.51 16 7 C 0.05 0.55 6.12 37.16 0.23 0.77 16 8 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 9 C 0.51 11.01 7.02 -10.99 -0.08 10.94 16 10 O -0.52 -13.79 16.08 -14.18 -0.23 -14.02 16 11 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 12 C 0.22 5.34 4.27 -5.20 -0.02 5.32 16 13 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 14 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 17 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.13 2.03 5.07 -4.04 -0.02 2.01 16 22 C -0.17 -2.22 5.95 -90.61 -0.54 -2.76 16 23 C -0.19 -1.95 9.33 -26.68 -0.25 -2.20 16 24 C -0.17 -1.80 10.26 -26.69 -0.27 -2.08 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.75 5.43 -51.93 -0.28 0.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.22 5.63 -51.93 -0.29 0.93 16 31 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.04 0.49 7.99 -51.93 -0.42 0.08 16 33 H 0.06 0.56 5.14 -51.93 -0.27 0.29 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.04 0.98 6.80 -51.92 -0.35 0.63 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 41 H 0.08 1.06 3.99 -51.93 -0.21 0.85 16 42 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.09 0.86 7.57 -51.93 -0.39 0.46 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -34.49 362.82 -8.52 -43.01 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.96 Total: 0.88 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.95 Total: -6.33 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.34 Total: -39.60 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.75 Total: -20.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.49 -8.52 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599325941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.377 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds