Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 C 1.52998 * 109.47114 * 183.27077 * 3 2 1 5 5 H 1.08997 * 109.47295 * 54.32002 * 4 3 2 6 6 O 1.42904 * 109.46895 * 294.31849 * 4 3 2 7 7 C 1.42904 * 113.99863 * 99.57725 * 6 4 3 8 8 C 1.52999 * 109.46803 * 184.98308 * 7 6 4 9 9 C 1.50702 * 109.46883 * 174.32007 * 4 3 2 10 10 O 1.21287 * 119.99780 * 108.91582 * 9 4 3 11 11 N 1.34771 * 119.99902 * 288.91188 * 9 4 3 12 12 C 1.46930 * 120.63231 * 4.44711 * 11 9 4 13 13 C 1.53620 * 108.54496 * 126.36560 * 12 11 9 14 14 C 1.53039 * 109.24283 * 54.85421 * 13 12 11 15 15 C 1.53047 * 109.54023 * 298.51274 * 14 13 12 16 16 H 1.08999 * 109.52350 * 301.39656 * 15 14 13 17 17 C 1.50699 * 109.49741 * 181.31284 * 15 14 13 18 18 H 1.07993 * 119.99991 * 240.15712 * 17 15 14 19 19 C 1.37884 * 119.99799 * 60.16274 * 17 15 14 20 20 N 1.31512 * 119.99814 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99646 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47245 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46978 * 120.00350 * 21 19 17 24 24 H 1.48504 * 109.47054 * 239.99872 * 21 19 17 25 25 C 1.46924 * 120.62918 * 184.72144 * 11 9 4 26 26 H 1.09000 * 109.46863 * 59.99342 * 1 2 3 27 27 H 1.08989 * 109.47736 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46554 * 300.00340 * 1 2 3 29 29 H 1.09001 * 109.46554 * 239.99660 * 2 1 3 30 30 H 1.09003 * 109.46495 * 120.00300 * 2 1 3 31 31 H 1.08999 * 109.46960 * 63.27071 * 3 2 1 32 32 H 1.08998 * 109.47187 * 303.27436 * 3 2 1 33 33 H 1.08999 * 109.46443 * 304.97636 * 7 6 4 34 34 H 1.08995 * 109.47229 * 64.98121 * 7 6 4 35 35 H 1.08999 * 109.47310 * 299.99439 * 8 7 6 36 36 H 1.08995 * 109.47381 * 59.99906 * 8 7 6 37 37 H 1.08998 * 109.46625 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.58455 * 246.19918 * 12 11 9 39 39 H 1.08998 * 109.58201 * 6.62232 * 12 11 9 40 40 H 1.08999 * 109.63739 * 294.86592 * 13 12 11 41 41 H 1.09000 * 109.43341 * 174.72370 * 13 12 11 42 42 H 1.08994 * 109.46451 * 178.49007 * 14 13 12 43 43 H 1.09000 * 109.46222 * 58.52971 * 14 13 12 44 44 H 0.97003 * 119.99632 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58774 * 353.37685 * 25 11 9 46 46 H 1.09001 * 109.58688 * 113.65801 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5679 1.4431 -0.0823 5 1 3.8855 0.8598 -0.9466 6 8 4.1092 0.8652 1.1073 7 6 4.5011 -0.5015 0.9633 8 6 4.9466 -1.0500 2.3203 9 6 4.0628 2.8596 -0.2228 10 8 4.6363 3.3961 0.7015 11 7 3.8681 3.5301 -1.3756 12 6 3.0912 2.9299 -2.4688 13 6 1.9776 3.9085 -2.8713 14 6 2.5975 5.2655 -3.2126 15 6 3.3098 5.8274 -1.9800 16 1 2.5970 5.9275 -1.1614 17 6 3.8923 7.1780 -2.3078 18 1 4.9570 7.3405 -2.2286 19 6 3.0658 8.2063 -2.7087 20 7 1.7693 8.0082 -2.8055 21 14 3.7879 9.8807 -3.1143 22 1 5.2606 9.8431 -2.9279 23 1 3.4766 10.2255 -4.5248 24 1 3.2003 10.9046 -2.2134 25 6 4.4338 4.8727 -1.5653 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7255 1.9391 0.9178 32 1 1.6297 1.9730 -0.8592 33 1 3.6570 -1.0845 0.5951 34 1 5.3267 -0.5700 0.2549 35 1 5.7907 -0.4669 2.6886 36 1 4.1210 -0.9815 3.0287 37 1 5.2451 -2.0926 2.2105 38 1 3.7440 2.7441 -3.3216 39 1 2.6509 1.9916 -2.1317 40 1 1.2770 4.0263 -2.0446 41 1 1.4507 3.5198 -3.7427 42 1 1.8132 5.9550 -3.5245 43 1 3.3163 5.1429 -4.0228 44 1 1.1879 8.7318 -3.0872 45 1 4.8795 5.2167 -0.6319 46 1 5.1956 4.8416 -2.3442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600092282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = -101.275373 kcal Electronic energy + Delta-G solvation = -23822.529696 eV Core-core repulsion = 20518.585289 eV Total energy + Delta-G solvation = -3303.944407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09703 -38.06082 -36.55830 -34.85202 -33.43308 -31.73796 -31.30449 -30.38530 -28.85536 -25.45240 -25.07408 -23.67318 -22.74684 -21.69568 -21.27062 -20.00059 -18.32140 -17.30700 -16.66575 -16.19201 -15.96490 -15.18516 -14.95182 -14.66654 -14.46522 -13.95491 -13.57913 -13.37840 -13.21899 -13.07595 -12.75607 -12.64026 -12.24951 -12.17472 -12.07101 -12.02889 -11.80371 -11.33360 -11.25890 -11.10720 -11.00135 -10.84201 -10.71297 -10.64572 -10.30912 -9.96531 -9.84600 -9.69916 -9.44221 -9.04007 -8.78196 -8.39035 -7.89103 -6.02122 -4.08907 3.00951 3.14293 3.28978 3.37377 3.42010 3.96182 4.42863 4.59285 4.75426 4.81545 4.91327 4.99296 5.06511 5.18889 5.24303 5.26489 5.30857 5.39703 5.51071 5.58494 5.60875 5.69668 5.71066 5.77790 5.79995 5.98108 6.01290 6.07515 6.10996 6.23193 6.31267 6.38184 6.47113 6.65793 6.79078 6.94164 7.11377 7.18676 7.33418 7.69206 7.91224 8.00832 8.07234 8.37733 8.67027 8.94986 9.56021 11.03493 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.004180 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.879520 B = 6696.417064 C = 7400.654610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.143 4.143 4 C 0.078 3.922 5 H 0.080 0.920 6 O -0.355 6.355 7 C 0.049 3.951 8 C -0.150 4.150 9 C 0.506 3.494 10 O -0.530 6.530 11 N -0.602 5.602 12 C 0.099 3.901 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.513 4.513 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.118 3.882 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.035 0.965 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -19.012 1.728 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.016 3.984 5 H 0.098 0.902 6 O -0.273 6.273 7 C -0.028 4.028 8 C -0.207 4.207 9 C 0.292 3.708 10 O -0.406 6.406 11 N -0.336 5.336 12 C -0.024 4.024 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.552 4.552 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.003 4.003 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.577 -18.525 2.364 18.684 hybrid contribution 0.228 0.780 -0.636 1.032 sum -0.349 -17.744 1.728 17.832 Atomic orbital electron populations 1.21761 0.95393 1.01484 1.02283 1.21608 0.96377 0.96259 1.01890 1.22254 0.93098 0.98153 1.04591 1.21959 0.94253 0.93035 0.89125 0.90173 1.88056 1.81930 1.25038 1.32257 1.22699 0.98420 0.83114 0.98549 1.21717 1.02414 1.00219 0.96363 1.20378 0.80196 0.87564 0.82662 1.90678 1.42399 1.69078 1.38439 1.48256 1.52531 1.18579 1.14236 1.22043 0.94051 0.96462 0.89816 1.22077 0.96815 0.97927 1.00400 1.21624 1.01045 0.93231 0.99085 1.18975 0.92490 0.92166 0.94293 0.95178 1.21120 0.93866 0.94863 1.45329 0.92425 1.24936 0.94808 0.98727 0.95351 1.69882 1.02906 1.32263 1.47723 0.86525 0.79413 0.84139 0.77866 1.19727 1.21066 1.21019 1.22006 0.97464 0.79616 1.01205 0.92427 0.92818 0.92543 0.92177 0.91467 0.90226 0.89315 0.92878 0.93558 0.91673 0.91841 0.91267 0.91892 0.90651 0.92251 0.92444 0.88610 0.94572 0.93050 0.90288 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.18 4.83 -26.73 -0.13 -1.31 16 3 C -0.14 -1.80 4.44 -26.73 -0.12 -1.92 16 4 C 0.08 1.12 1.84 -27.88 -0.05 1.07 16 5 H 0.08 0.95 7.13 -51.93 -0.37 0.58 16 6 O -0.35 -5.37 9.35 -54.89 -0.51 -5.88 16 7 C 0.05 0.52 6.01 37.16 0.22 0.75 16 8 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 9 C 0.51 9.67 7.06 -10.99 -0.08 9.59 16 10 O -0.53 -12.43 15.95 -14.11 -0.23 -12.66 16 11 N -0.60 -11.26 2.97 -172.51 -0.51 -11.77 16 12 C 0.10 1.50 5.56 -3.49 -0.02 1.48 16 13 C -0.13 -2.31 6.01 -26.39 -0.16 -2.47 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 21 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.12 2.58 5.66 -3.71 -0.02 2.56 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.40 8.14 -51.94 -0.42 -0.02 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.11 5.52 -51.93 -0.29 0.82 16 33 H 0.05 0.47 5.81 -51.93 -0.30 0.17 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.91 4.22 -51.93 -0.22 0.69 16 40 H 0.06 1.08 8.13 -51.93 -0.42 0.65 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -31.24 353.47 -8.72 -39.96 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.07 Total: -0.17 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.33 Total: -6.65 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.12 Total: -36.04 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.74 Total: -18.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.24 -8.72 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.312 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds