Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.53009 * 109.46947 * 174.75104 * 3 2 1 5 5 H 1.08994 * 109.46602 * 305.68709 * 4 3 2 6 6 O 1.42899 * 109.47078 * 65.68459 * 4 3 2 7 7 C 1.42896 * 114.00224 * 257.66849 * 6 4 3 8 8 C 1.53000 * 109.47275 * 179.44504 * 7 6 4 9 9 C 1.50700 * 109.47031 * 185.69105 * 4 3 2 10 10 O 1.21282 * 119.99640 * 248.55476 * 9 4 3 11 11 N 1.34775 * 120.00268 * 68.82315 * 9 4 3 12 12 C 1.46930 * 120.62724 * 4.38640 * 11 9 4 13 13 C 1.53194 * 108.77324 * 233.57837 * 12 11 9 14 14 C 1.53039 * 109.31459 * 305.36959 * 13 12 11 15 15 C 1.53038 * 109.53996 * 61.36174 * 14 13 12 16 16 H 1.09005 * 109.49299 * 58.62013 * 15 14 13 17 17 C 1.50699 * 109.50073 * 178.68218 * 15 14 13 18 18 H 1.07999 * 119.99940 * 119.99846 * 17 15 14 19 19 C 1.37877 * 120.00104 * 300.00775 * 17 15 14 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00305 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47058 * 59.99384 * 21 19 17 23 23 H 1.48496 * 109.47341 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46854 * 299.99847 * 21 19 17 25 25 C 1.46926 * 120.63155 * 184.09810 * 11 9 4 26 26 H 1.08994 * 109.47054 * 300.00071 * 1 2 3 27 27 H 1.09006 * 109.47336 * 60.00169 * 1 2 3 28 28 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 240.00317 * 2 1 3 30 30 H 1.08990 * 109.47244 * 120.00145 * 2 1 3 31 31 H 1.08992 * 109.47218 * 54.74856 * 3 2 1 32 32 H 1.09001 * 109.47176 * 294.74700 * 3 2 1 33 33 H 1.08999 * 109.47302 * 299.44869 * 7 6 4 34 34 H 1.09007 * 109.46978 * 59.44991 * 7 6 4 35 35 H 1.08999 * 109.47525 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47253 * 300.00395 * 8 7 6 37 37 H 1.09002 * 109.46649 * 59.99869 * 8 7 6 38 38 H 1.08992 * 109.59001 * 353.36751 * 12 11 9 39 39 H 1.09001 * 109.58228 * 113.79584 * 12 11 9 40 40 H 1.08999 * 109.49217 * 65.31881 * 13 12 11 41 41 H 1.09002 * 109.49397 * 185.41775 * 13 12 11 42 42 H 1.08996 * 109.46066 * 181.38503 * 14 13 12 43 43 H 1.08998 * 109.45541 * 301.34251 * 14 13 12 44 44 H 0.96998 * 120.00448 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.58840 * 246.20910 * 25 11 9 46 46 H 1.09006 * 109.58349 * 6.63723 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5643 1.4445 0.1320 5 1 3.8534 0.8713 1.0127 6 8 4.1440 0.8532 -1.0326 7 6 4.5876 -0.4917 -0.8422 8 6 5.1745 -1.0253 -2.1505 9 6 4.0545 2.8627 0.2725 10 8 4.6974 3.3733 -0.6202 11 7 3.7831 3.5617 1.3924 12 6 3.0942 2.9253 2.5235 13 6 1.8709 3.7698 2.8940 14 6 2.3119 5.2115 3.1570 15 6 2.9356 5.7957 1.8875 16 1 2.2091 5.7599 1.0756 17 6 3.3401 7.2256 2.1378 18 1 4.3737 7.5207 2.0328 19 6 2.3907 8.1571 2.5012 20 7 1.1320 7.7978 2.6289 21 14 2.8922 9.9295 2.8123 22 1 3.4977 10.4960 1.5803 23 1 1.6948 10.7245 3.1856 24 1 3.8827 9.9769 3.9176 25 6 4.1760 4.9727 1.5078 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6019 1.9828 0.8391 32 1 1.7555 1.9285 -0.9333 33 1 5.3513 -0.5158 -0.0648 34 1 3.7440 -1.1135 -0.5422 35 1 5.5125 -2.0514 -2.0054 36 1 4.4109 -1.0012 -2.9278 37 1 6.0180 -0.4035 -2.4505 38 1 2.7738 1.9231 2.2392 39 1 3.7699 2.8670 3.3767 40 1 1.1547 3.7526 2.0724 41 1 1.4058 3.3621 3.7915 42 1 1.4470 5.8090 3.4448 43 1 3.0466 5.2252 3.9621 44 1 0.4641 8.4532 2.8842 45 1 4.9381 5.0778 2.2799 46 1 4.5696 5.3216 0.5530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600092283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -103.948768 kcal Electronic energy + Delta-G solvation = -23857.784963 eV Core-core repulsion = 20553.724629 eV Total energy + Delta-G solvation = -3304.060334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08281 -38.03549 -36.56494 -34.83440 -33.43413 -31.70774 -31.31265 -30.37549 -28.84892 -25.43664 -25.06124 -23.65340 -22.77196 -21.70564 -21.22481 -19.98940 -18.29323 -17.29616 -16.69777 -16.18476 -15.92403 -15.15916 -14.92866 -14.65520 -14.52303 -13.90559 -13.56508 -13.42565 -13.20555 -13.06182 -12.75336 -12.61612 -12.23431 -12.12891 -12.04796 -12.00897 -11.85399 -11.28498 -11.23801 -11.09737 -10.96723 -10.83680 -10.76190 -10.64120 -10.34182 -9.96996 -9.86647 -9.72758 -9.45878 -9.02339 -8.79776 -8.38653 -7.89563 -6.02235 -4.09294 2.99956 3.17073 3.31660 3.35960 3.39652 3.95382 4.42586 4.62491 4.77392 4.82230 4.93247 5.01145 5.06695 5.20160 5.25188 5.26532 5.31155 5.42478 5.52885 5.59364 5.63234 5.71594 5.72785 5.79371 5.81478 5.99400 6.03292 6.08161 6.13713 6.24862 6.31470 6.38091 6.46176 6.65826 6.78727 6.92933 7.11655 7.18632 7.32874 7.68305 7.90546 8.00390 8.06557 8.37315 8.66871 8.94043 9.55573 11.03198 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.004253 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.869926 B = 6582.396949 C = 7256.657430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.078 3.922 5 H 0.081 0.919 6 O -0.355 6.355 7 C 0.051 3.949 8 C -0.150 4.150 9 C 0.505 3.495 10 O -0.531 6.531 11 N -0.602 5.602 12 C 0.103 3.897 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.118 3.882 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.261 0.739 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -18.537 -1.182 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.016 3.984 5 H 0.098 0.902 6 O -0.273 6.273 7 C -0.026 4.026 8 C -0.207 4.207 9 C 0.291 3.709 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.020 4.020 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.003 4.003 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.858 -18.087 -1.803 18.197 hybrid contribution 0.125 0.827 0.585 1.021 sum 0.983 -17.260 -1.218 17.331 Atomic orbital electron populations 1.21762 0.95400 1.01450 1.02314 1.21572 0.96344 0.96238 1.01819 1.22170 0.92856 0.98094 1.04593 1.21977 0.94011 0.92834 0.89570 0.90160 1.88048 1.79507 1.26867 1.32863 1.22670 0.97767 0.83649 0.98521 1.21717 1.01771 1.00346 0.96878 1.20427 0.80467 0.87622 0.82372 1.90672 1.39370 1.70694 1.40014 1.48266 1.57509 1.13092 1.14701 1.21872 0.95102 0.96011 0.89001 1.22021 0.96074 0.98764 1.00442 1.21628 1.02438 0.91770 0.99173 1.19048 0.91532 0.93019 0.94200 0.95195 1.21047 0.94488 0.93012 1.46811 0.92523 1.24927 0.94886 0.98730 0.95203 1.69857 1.00790 1.34262 1.47894 0.86638 0.77854 0.84649 0.78754 1.20216 1.21319 1.20264 1.22104 0.99245 0.77361 1.01584 0.92405 0.92540 0.92849 0.91566 0.92255 0.89437 0.90284 0.93585 0.93043 0.91276 0.91828 0.91672 0.91033 0.91842 0.92244 0.92423 0.88574 0.94566 0.92925 0.92651 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.21 4.87 -26.73 -0.13 -1.34 16 3 C -0.14 -1.79 4.47 -26.73 -0.12 -1.91 16 4 C 0.08 1.12 1.82 -27.88 -0.05 1.07 16 5 H 0.08 0.96 6.80 -51.93 -0.35 0.60 16 6 O -0.35 -5.40 9.31 -54.99 -0.51 -5.91 16 7 C 0.05 0.55 6.06 37.16 0.23 0.77 16 8 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 9 C 0.51 9.65 7.05 -10.99 -0.08 9.57 16 10 O -0.53 -12.41 15.95 -14.21 -0.23 -12.64 16 11 N -0.60 -11.24 2.97 -172.50 -0.51 -11.75 16 12 C 0.10 1.56 5.48 -3.71 -0.02 1.54 16 13 C -0.13 -2.30 5.92 -26.61 -0.16 -2.46 16 14 C -0.11 -2.46 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 1.01 2.27 -91.43 -0.21 0.80 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -24.79 11.31 55.43 0.63 -24.16 16 21 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.12 2.58 5.67 -3.48 -0.02 2.56 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.65 6.74 -51.93 -0.35 0.30 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.14 5.30 -51.93 -0.28 0.86 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.47 8.13 -51.93 -0.42 0.04 16 34 H 0.05 0.46 6.14 -51.92 -0.32 0.14 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.86 4.60 -51.93 -0.24 0.63 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.87 7.03 -51.93 -0.37 1.51 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -30.98 353.26 -8.72 -39.70 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.07 Total: -0.01 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.33 Total: -6.63 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.12 Total: -35.91 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.74 Total: -18.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.98 -8.72 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.251 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds