Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47672 * 2 1 4 4 C 1.53000 * 109.47453 * 174.69178 * 3 2 1 5 5 H 1.08997 * 109.46897 * 54.44739 * 4 3 2 6 6 O 1.42897 * 109.47157 * 294.44542 * 4 3 2 7 7 C 1.42898 * 113.99850 * 128.79028 * 6 4 3 8 8 C 1.53001 * 109.47268 * 178.49598 * 7 6 4 9 9 C 1.50703 * 109.47287 * 174.44257 * 4 3 2 10 10 O 1.21285 * 119.99700 * 114.99909 * 9 4 3 11 11 N 1.34768 * 120.00202 * 295.00559 * 9 4 3 12 12 C 1.46925 * 120.63225 * 359.97438 * 11 9 4 13 13 C 1.53192 * 108.77906 * 233.58789 * 12 11 9 14 14 C 1.53039 * 109.31449 * 305.36650 * 13 12 11 15 15 C 1.53049 * 109.53713 * 61.36197 * 14 13 12 16 16 H 1.09004 * 109.49562 * 58.61714 * 15 14 13 17 17 C 1.50701 * 109.49723 * 178.68388 * 15 14 13 18 18 H 1.07993 * 120.00165 * 119.99966 * 17 15 14 19 19 C 1.37876 * 120.00027 * 300.27571 * 17 15 14 20 20 N 1.31524 * 120.00026 * 359.72609 * 19 17 15 21 21 Si 1.86799 * 120.00289 * 179.72354 * 19 17 15 22 22 H 1.48498 * 109.46916 * 89.99733 * 21 19 17 23 23 H 1.48499 * 109.47352 * 209.99959 * 21 19 17 24 24 H 1.48497 * 109.46700 * 330.00192 * 21 19 17 25 25 C 1.46932 * 120.63103 * 179.97438 * 11 9 4 26 26 H 1.08992 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46924 * 300.00242 * 1 2 3 28 28 H 1.09000 * 109.47089 * 59.99520 * 1 2 3 29 29 H 1.09006 * 109.46924 * 239.99758 * 2 1 3 30 30 H 1.09008 * 109.47319 * 120.00242 * 2 1 3 31 31 H 1.09003 * 109.47283 * 54.69060 * 3 2 1 32 32 H 1.09001 * 109.46894 * 294.69414 * 3 2 1 33 33 H 1.09004 * 109.47207 * 298.49336 * 7 6 4 34 34 H 1.08993 * 109.47474 * 58.49452 * 7 6 4 35 35 H 1.09001 * 109.46651 * 60.00069 * 8 7 6 36 36 H 1.09000 * 109.47483 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47187 * 300.00018 * 8 7 6 38 38 H 1.09004 * 109.58605 * 113.80470 * 12 11 9 39 39 H 1.09000 * 109.58857 * 353.38194 * 12 11 9 40 40 H 1.08996 * 109.49981 * 185.40966 * 13 12 11 41 41 H 1.08998 * 109.51983 * 65.33244 * 13 12 11 42 42 H 1.08998 * 109.45850 * 301.34748 * 14 13 12 43 43 H 1.09003 * 109.46278 * 181.38086 * 14 13 12 44 44 H 0.96992 * 120.00115 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58569 * 6.62161 * 25 11 9 46 46 H 1.08998 * 109.58544 * 246.20039 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5643 1.4444 0.1334 5 1 3.9983 0.8218 -0.6489 6 8 3.9310 0.9256 1.4134 7 6 4.9056 -0.1182 1.3599 8 6 5.2484 -0.5692 2.7812 9 6 4.0787 2.8543 -0.0034 10 8 4.6186 3.3967 0.9375 11 7 3.9387 3.5124 -1.1711 12 6 3.2872 2.8685 -2.3198 13 6 4.2237 2.9534 -3.5292 14 6 4.6140 4.4142 -3.7656 15 6 5.3579 4.9499 -2.5400 16 1 6.2440 4.3418 -2.3577 17 6 5.7702 6.3783 -2.7864 18 1 5.4123 7.1634 -2.1369 19 6 6.5996 6.6837 -3.8447 20 7 7.0353 5.7276 -4.6358 21 14 7.1043 8.4552 -4.1548 22 1 8.3554 8.7508 -3.4114 23 1 7.3325 8.6578 -5.6081 24 1 6.0264 9.3654 -3.6914 25 6 4.4346 4.8875 -1.3196 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6013 1.9830 0.8386 32 1 1.7565 1.9280 -0.9337 33 1 4.5042 -0.9616 0.7980 34 1 5.8060 0.2502 0.8685 35 1 4.3479 -0.9377 3.2725 36 1 5.9914 -1.3656 2.7404 37 1 5.6497 0.2742 3.3431 38 1 2.3524 3.3819 -2.5449 39 1 3.0853 1.8230 -2.0867 40 1 3.7146 2.5655 -4.4115 41 1 5.1202 2.3637 -3.3378 42 1 3.7152 5.0077 -3.9328 43 1 5.2608 4.4803 -4.6405 44 1 7.6185 5.9425 -5.3805 45 1 4.9897 5.1741 -0.4264 46 1 3.5935 5.5658 -1.4628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600092284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = -104.212622 kcal Electronic energy + Delta-G solvation = -23754.798819 eV Core-core repulsion = 20450.727043 eV Total energy + Delta-G solvation = -3304.071776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08283 -37.94434 -36.51725 -35.04402 -33.44146 -31.62803 -31.29335 -30.40015 -28.86697 -25.43029 -25.09577 -23.51379 -22.84625 -21.77136 -21.21016 -19.94253 -18.44423 -17.24133 -16.75588 -16.21372 -15.63740 -15.21888 -14.92543 -14.74402 -14.41609 -13.99583 -13.59904 -13.47903 -13.29824 -12.79965 -12.76123 -12.71066 -12.22346 -12.19842 -12.08695 -11.99465 -11.77774 -11.31866 -11.22666 -11.05613 -10.97230 -10.86698 -10.74434 -10.64904 -10.34448 -10.05144 -9.95104 -9.77367 -9.45036 -8.97917 -8.75784 -8.39714 -7.89823 -6.03142 -4.10192 3.01523 3.24602 3.29526 3.36183 3.40133 3.87684 4.41850 4.59749 4.78299 4.82553 4.96998 4.99441 5.10089 5.23168 5.25339 5.30735 5.32417 5.43279 5.46564 5.57438 5.64314 5.68990 5.70490 5.78639 5.86780 5.97542 6.03884 6.07500 6.10426 6.20401 6.30758 6.37813 6.46196 6.64915 6.78316 6.94355 7.10813 7.18331 7.32385 7.67720 7.90023 8.00689 8.06236 8.36575 8.67188 8.93532 9.54807 11.02349 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.004172 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.290401 B = 6709.289560 C = 7303.558566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.077 3.923 5 H 0.084 0.916 6 O -0.355 6.355 7 C 0.054 3.946 8 C -0.149 4.149 9 C 0.493 3.507 10 O -0.534 6.534 11 N -0.601 5.601 12 C 0.104 3.896 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 -14.187 5.592 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.165 4.165 4 C 0.015 3.985 5 H 0.102 0.898 6 O -0.273 6.273 7 C -0.022 4.022 8 C -0.206 4.206 9 C 0.279 3.721 10 O -0.410 6.410 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.004 4.004 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.721 -13.855 6.130 18.001 hybrid contribution 0.486 0.841 -0.649 1.168 sum -9.235 -13.014 5.481 16.872 Atomic orbital electron populations 1.21752 0.95593 1.01506 1.01971 1.21494 0.96061 0.96129 1.02253 1.22005 0.92337 0.98371 1.03832 1.21986 0.96219 0.92970 0.87332 0.89802 1.87984 1.59573 1.53126 1.26593 1.22600 0.91688 0.89459 0.98497 1.21708 1.01711 1.01520 0.95643 1.20908 0.80019 0.88311 0.82865 1.90668 1.43283 1.68603 1.38473 1.48312 1.58097 1.16401 1.10757 1.21914 0.96130 0.96776 0.87086 1.22021 0.98514 1.01215 0.95648 1.21631 0.99561 0.90438 1.03413 1.18967 0.93025 0.96780 0.89136 0.95348 1.21083 1.29113 0.92518 1.12524 0.92459 1.24933 0.95731 0.97220 0.95903 1.69871 1.34105 1.31675 1.17191 0.86574 0.79028 0.85050 0.77248 1.20662 1.21248 1.19860 1.21993 0.97897 0.78928 1.01554 0.92806 0.92654 0.92645 0.92108 0.91348 0.90468 0.89512 0.93460 0.93240 0.92016 0.91242 0.91560 0.91691 0.90949 0.92391 0.92447 0.94525 0.88578 0.92989 0.90340 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.13 5.89 -26.74 -0.16 -1.29 16 3 C -0.13 -1.49 4.45 -26.73 -0.12 -1.61 16 4 C 0.08 1.10 1.80 -27.88 -0.05 1.05 16 5 H 0.08 1.06 6.91 -51.93 -0.36 0.70 16 6 O -0.35 -5.37 8.99 -55.09 -0.50 -5.87 16 7 C 0.05 0.65 6.36 37.16 0.24 0.89 16 8 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 9 C 0.49 9.34 7.12 -10.99 -0.08 9.26 16 10 O -0.53 -12.38 15.92 -14.31 -0.23 -12.60 16 11 N -0.60 -11.22 2.97 -172.78 -0.51 -11.73 16 12 C 0.10 1.57 4.89 -3.71 -0.02 1.55 16 13 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 14 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 0.98 2.25 -91.66 -0.21 0.78 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.51 -13.93 8.57 -34.44 -0.30 -14.23 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.86 11.30 55.43 0.63 -24.24 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.57 5.65 -3.72 -0.02 2.55 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.67 7.71 -51.92 -0.40 0.27 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.94 5.44 -51.93 -0.28 0.66 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 39 H 0.07 0.87 4.75 -51.93 -0.25 0.62 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 2.42 6.03 -51.93 -0.31 2.10 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -31.01 357.72 -8.86 -39.87 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.27 Total: -0.35 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.35 Total: -6.54 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.11 Total: -35.97 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.72 Total: -18.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.01 -8.86 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.344 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds