Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99595 * 2 1 4 4 O 1.20823 * 120.00262 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99579 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46972 * 180.02562 * 5 3 2 7 7 N 1.46891 * 109.47175 * 180.02562 * 6 5 3 8 8 C 1.46900 * 111.00052 * 66.04166 * 7 6 5 9 9 C 1.53009 * 109.47226 * 185.46640 * 8 7 6 10 10 C 1.52999 * 109.46877 * 141.44249 * 9 8 7 11 11 C 1.52997 * 109.47455 * 261.44722 * 9 8 7 12 12 C 1.46904 * 111.00164 * 190.00091 * 7 6 5 13 13 C 1.52992 * 109.47258 * 61.41539 * 12 7 6 14 14 C 1.50703 * 115.54878 * 52.71120 * 13 12 7 15 15 H 1.08002 * 119.99769 * 245.40213 * 14 13 12 16 16 C 1.37880 * 119.99769 * 65.13030 * 14 13 12 17 17 N 1.31511 * 120.00064 * 5.59837 * 16 14 13 18 18 Si 1.86801 * 119.99803 * 185.60419 * 16 14 13 19 19 H 1.48499 * 109.47430 * 89.99674 * 18 16 14 20 20 H 1.48506 * 109.46858 * 210.00101 * 18 16 14 21 21 H 1.48497 * 109.46822 * 329.99395 * 18 16 14 22 22 C 1.53004 * 117.50024 * 198.38080 * 13 12 7 23 23 C 1.53001 * 117.49982 * 267.04342 * 13 12 7 24 24 H 1.08994 * 109.47072 * 59.99741 * 1 2 3 25 25 H 1.08999 * 109.46839 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 299.99313 * 1 2 3 27 27 H 1.08995 * 109.47199 * 60.00153 * 5 3 2 28 28 H 1.09001 * 109.46943 * 300.00289 * 5 3 2 29 29 H 1.09003 * 109.47265 * 59.99558 * 6 5 3 30 30 H 1.09002 * 109.46647 * 299.99747 * 6 5 3 31 31 H 1.08994 * 109.47415 * 305.46785 * 8 7 6 32 32 H 1.09002 * 109.47332 * 65.47477 * 8 7 6 33 33 H 1.09008 * 109.46568 * 21.44580 * 9 8 7 34 34 H 1.08998 * 109.47147 * 60.00262 * 10 9 8 35 35 H 1.09005 * 109.46908 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47205 * 300.00079 * 10 9 8 37 37 H 1.08992 * 109.46930 * 287.48942 * 11 9 8 38 38 H 1.09007 * 109.47031 * 47.48537 * 11 9 8 39 39 H 1.09001 * 109.47021 * 167.48450 * 11 9 8 40 40 H 1.09002 * 109.46525 * 301.41620 * 12 7 6 41 41 H 1.09002 * 109.46876 * 181.42263 * 12 7 6 42 42 H 0.96997 * 119.99829 * 184.99328 * 17 16 14 43 43 H 1.09001 * 117.50151 * 215.00369 * 22 13 12 44 44 H 1.08999 * 117.49646 * 0.02562 * 22 13 12 45 45 H 1.08998 * 117.49710 * 359.97284 * 23 13 12 46 46 H 1.09000 * 117.50219 * 144.97539 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4670 2.8191 -0.0010 8 6 6.0208 2.2915 -1.2551 9 6 7.5480 2.2614 -1.1655 10 6 8.0739 0.9958 -1.8457 11 6 8.1244 3.4937 -1.8655 12 6 5.9223 4.1952 0.2379 13 6 5.4368 4.6618 1.6116 14 6 5.7756 3.7520 2.7642 15 1 4.9873 3.2509 3.3064 16 6 7.0922 3.5549 3.1230 17 7 8.0446 4.2438 2.5332 18 14 7.5231 2.3093 4.4467 19 1 7.7540 0.9822 3.8214 20 1 8.7544 2.7444 5.1538 21 1 6.4035 2.2111 5.4172 22 6 5.4211 6.1678 1.8814 23 6 4.1055 5.4135 1.6726 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.9557 0.7811 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 3.6107 3.2357 0.8906 30 1 3.6100 3.2368 -0.8894 31 1 5.6467 1.2813 -1.4210 32 1 5.7182 2.9318 -2.0838 33 1 7.8505 2.2636 -0.1183 34 1 7.7713 0.9936 -2.8928 35 1 9.1618 0.9741 -1.7814 36 1 7.6633 0.1179 -1.3470 37 1 8.0152 3.3831 -2.9442 38 1 7.5879 4.3833 -1.5353 39 1 9.1807 3.5927 -1.6154 40 1 5.5168 4.8509 -0.5328 41 1 7.0113 4.2282 0.2068 42 1 8.9748 4.0545 2.7328 43 1 5.6558 6.5005 2.8925 44 1 5.7563 6.8261 1.0799 45 1 3.5758 5.5760 0.7340 46 1 3.4746 5.2497 2.5462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602764129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -66.636920 kcal Electronic energy + Delta-G solvation = -24017.828900 eV Core-core repulsion = 20715.386529 eV Total energy + Delta-G solvation = -3302.442371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30670 -38.29375 -36.39141 -35.88701 -33.92082 -31.83249 -30.83578 -27.75576 -26.95856 -26.34681 -25.21937 -24.45780 -21.52442 -21.13256 -20.06243 -19.55055 -18.88429 -17.46101 -16.49483 -16.45225 -15.85562 -15.17600 -14.55989 -14.39568 -14.27230 -13.72663 -13.51280 -13.32607 -13.10028 -12.91170 -12.58174 -12.45075 -12.08999 -12.01767 -11.79416 -11.44658 -11.28367 -11.12703 -10.82883 -10.76223 -10.71716 -10.52228 -10.38186 -10.29999 -10.25572 -10.21016 -10.12380 -9.89954 -9.21958 -8.84475 -8.32333 -7.93546 -7.36012 -5.89395 -3.89158 2.39536 2.83128 3.39130 3.45286 3.48222 4.53312 4.64352 5.02859 5.06955 5.13658 5.26427 5.31718 5.37507 5.38184 5.46520 5.50443 5.54296 5.62394 5.85445 5.94121 6.00209 6.03457 6.17280 6.21592 6.24083 6.27005 6.32504 6.40295 6.50622 6.53163 6.61197 6.64253 6.71935 6.76331 6.80303 6.99142 7.08359 7.20140 7.49009 7.58485 7.88367 8.01229 8.03068 8.11733 8.59088 9.05668 9.72739 11.20625 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.006416 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.040375 B = 4363.138478 C = 5088.883928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.507 6.507 5 C -0.110 4.110 6 C 0.069 3.931 7 N -0.507 5.507 8 C 0.056 3.944 9 C -0.099 4.099 10 C -0.140 4.140 11 C -0.146 4.146 12 C 0.101 3.899 13 C 0.059 3.941 14 C -0.463 4.463 15 H 0.054 0.946 16 C 0.078 3.922 17 N -0.883 5.883 18 Si 0.882 3.118 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.176 4.176 23 C -0.217 4.217 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.051 0.949 40 H -0.007 1.007 41 H 0.102 0.898 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.110 -7.302 -8.714 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.394 6.394 5 C -0.148 4.148 6 C -0.059 4.059 7 N -0.230 5.230 8 C -0.072 4.072 9 C -0.117 4.117 10 C -0.198 4.198 11 C -0.204 4.204 12 C -0.026 4.026 13 C 0.058 3.942 14 C -0.501 4.501 15 H 0.072 0.928 16 C -0.124 4.124 17 N -0.521 5.521 18 Si 0.710 3.290 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.215 4.215 23 C -0.254 4.254 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.012 0.988 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.963 -7.221 -8.283 12.502 hybrid contribution -0.261 -0.105 -0.003 0.282 sum -6.224 -7.326 -8.286 12.691 Atomic orbital electron populations 1.23198 0.76994 1.03262 1.02418 1.86529 1.23002 1.34104 1.84483 1.24071 0.92522 0.80997 0.71869 1.90661 1.67356 1.36286 1.45115 1.21479 0.85764 1.01541 1.06046 1.21876 0.89323 0.92290 1.02423 1.61887 1.06106 1.23664 1.31386 1.22299 0.95033 0.99033 0.90874 1.21183 0.94307 0.94149 1.02101 1.21830 1.00562 0.97758 0.99628 1.21986 1.00975 0.98537 0.98875 1.21774 1.01939 0.84565 0.94324 1.18873 0.91824 0.89812 0.93686 1.20218 0.91781 1.25801 1.12288 0.92756 1.24774 0.96460 0.95131 0.96020 1.69964 0.99433 1.38713 1.44009 0.86762 0.77638 0.82298 0.82259 1.20626 1.21729 1.20263 1.22728 1.00171 0.98253 1.00326 1.23004 0.91863 1.10394 1.00114 0.92180 0.88443 0.91969 0.88380 0.86492 0.88145 0.95825 0.91684 0.96186 0.88474 0.93578 0.93121 0.92834 0.93946 0.92050 0.93013 0.98848 0.87989 0.93398 0.90287 0.92189 0.91903 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.93 10.57 -39.26 -0.41 -5.35 16 3 C 0.46 7.22 7.96 36.01 0.29 7.51 16 4 O -0.51 -9.27 15.73 -18.75 -0.29 -9.57 16 5 C -0.11 -1.68 5.75 -27.88 -0.16 -1.84 16 6 C 0.07 1.27 3.98 -3.83 -0.02 1.25 16 7 N -0.51 -9.89 4.11 -234.63 -0.96 -10.86 16 8 C 0.06 0.92 4.72 -3.82 -0.02 0.90 16 9 C -0.10 -1.61 2.43 -90.62 -0.22 -1.83 16 10 C -0.14 -1.88 8.92 37.16 0.33 -1.54 16 11 C -0.15 -2.29 8.56 37.16 0.32 -1.97 16 12 C 0.10 2.21 3.60 -3.83 -0.01 2.19 16 13 C 0.06 1.41 0.72 -155.66 -0.11 1.30 16 14 C -0.46 -12.21 8.47 -34.44 -0.29 -12.50 16 15 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 16 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 17 N -0.88 -24.01 12.44 55.43 0.69 -23.32 16 18 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.18 -4.12 9.96 -26.69 -0.27 -4.39 16 23 C -0.22 -4.80 8.16 -26.69 -0.22 -5.02 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.10 1.27 6.44 -51.93 -0.33 0.94 16 28 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.10 2.11 5.49 -51.93 -0.29 1.82 16 30 H 0.02 0.43 8.08 -51.93 -0.42 0.02 16 31 H 0.06 0.94 5.81 -51.93 -0.30 0.64 16 32 H 0.02 0.32 7.73 -51.93 -0.40 -0.08 16 33 H 0.10 1.96 7.55 -51.92 -0.39 1.57 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.06 1.06 5.92 -51.92 -0.31 0.75 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H -0.01 -0.14 8.08 -51.93 -0.42 -0.56 16 41 H 0.10 2.40 4.60 -51.93 -0.24 2.16 16 42 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 43 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -28.69 364.47 -8.06 -36.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.14 Total: 3.42 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.59 Total: -12.55 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.28 Total: -34.17 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.71 Total: -14.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.69 -8.06 -36.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602764129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.891 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds