Wall clock time and date at job start Tue Mar 31 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00140 * 2 1 4 4 C 1.53001 * 109.46975 * 66.04308 * 3 2 1 5 5 C 1.50702 * 109.46941 * 180.02562 * 4 3 2 6 6 O 1.20822 * 120.00106 * 0.02562 * 5 4 3 7 7 O 1.34230 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99716 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47713 * 59.99364 * 8 7 5 10 10 C 1.53004 * 109.46799 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.46762 * 299.99158 * 8 7 5 12 12 C 1.46895 * 111.00367 * 236.04333 * 2 1 3 13 13 C 1.53002 * 109.47235 * 287.44117 * 12 2 1 14 14 C 1.50703 * 115.54645 * 305.55269 * 13 12 2 15 15 H 1.07995 * 119.99680 * 144.41161 * 14 13 12 16 16 C 1.37882 * 120.00151 * 324.41187 * 14 13 12 17 17 N 1.31512 * 119.99669 * 346.96698 * 16 14 13 18 18 Si 1.86796 * 119.99877 * 166.97372 * 16 14 13 19 19 H 1.48502 * 109.47282 * 59.99462 * 18 16 14 20 20 H 1.48496 * 109.47064 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46911 * 299.99578 * 18 16 14 22 22 C 1.52995 * 117.49866 * 159.88493 * 13 12 2 23 23 C 1.52993 * 117.49888 * 91.22292 * 13 12 2 24 24 H 1.09006 * 109.47103 * 64.90767 * 1 2 3 25 25 H 1.09004 * 109.47259 * 184.91144 * 1 2 3 26 26 H 1.09001 * 109.47418 * 304.91271 * 1 2 3 27 27 H 1.08993 * 109.47438 * 186.04423 * 3 2 1 28 28 H 1.09000 * 109.46746 * 306.04784 * 3 2 1 29 29 H 1.09003 * 109.47145 * 300.00277 * 4 3 2 30 30 H 1.08996 * 109.47261 * 60.00191 * 4 3 2 31 31 H 1.09001 * 109.46687 * 59.99925 * 9 8 7 32 32 H 1.08991 * 109.47269 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.46839 * 300.00473 * 9 8 7 34 34 H 1.09004 * 109.47058 * 59.99943 * 10 8 7 35 35 H 1.09004 * 109.46664 * 179.97438 * 10 8 7 36 36 H 1.08990 * 109.47419 * 299.99339 * 10 8 7 37 37 H 1.09005 * 109.46865 * 60.00853 * 11 8 7 38 38 H 1.09004 * 109.47096 * 180.02562 * 11 8 7 39 39 H 1.09000 * 109.47284 * 300.00464 * 11 8 7 40 40 H 1.09002 * 109.46971 * 47.43846 * 12 2 1 41 41 H 1.09001 * 109.47156 * 167.43604 * 12 2 1 42 42 H 0.97005 * 119.99628 * 185.04189 * 17 16 14 43 43 H 1.09002 * 117.50367 * 0.02562 * 22 13 12 44 44 H 1.09005 * 117.49826 * 145.01837 * 22 13 12 45 45 H 1.08997 * 117.49868 * 214.97737 * 23 13 12 46 46 H 1.09003 * 117.50201 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1710 3.4646 1.3180 6 8 2.7834 3.8766 0.3614 7 8 1.9712 4.2602 2.3805 8 6 2.5186 5.6032 2.3105 9 6 1.9036 6.3435 1.1211 10 6 2.1922 6.3549 3.6026 11 6 4.0365 5.5266 2.1340 12 6 1.9955 -0.7660 -1.1375 13 6 1.7747 -2.2600 -0.8923 14 6 2.3252 -2.7940 0.4050 15 1 1.7952 -3.5694 0.9380 16 6 3.5056 -2.2926 0.9114 17 7 4.2803 -1.5453 0.1558 18 14 4.0044 -2.6750 2.6704 19 1 4.1370 -4.1445 2.8391 20 1 5.3044 -2.0225 2.9693 21 1 2.9677 -2.1615 3.6016 22 6 1.8065 -3.1878 -2.1084 23 6 0.4768 -2.8776 -1.4165 24 1 -0.3634 0.4358 -0.9307 25 1 -0.3634 -1.0239 0.0880 26 1 -0.3634 0.5882 0.8427 27 1 3.0797 1.3445 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 0.5471 2.0845 1.4265 30 1 2.0657 1.5016 2.1492 31 1 0.8222 6.3980 1.2469 32 1 2.3142 7.3517 1.0690 33 1 2.1357 5.8080 0.2005 34 1 2.6302 5.8276 4.4502 35 1 2.6036 7.3630 3.5503 36 1 1.1110 6.4095 3.7280 37 1 4.2686 4.9913 1.2133 38 1 4.4476 6.5348 2.0820 39 1 4.4747 4.9992 2.9814 40 1 1.4768 -0.4667 -2.0483 41 1 3.0621 -0.5692 -1.2455 42 1 5.1443 -1.2532 0.4864 43 1 1.9852 -2.7339 -3.0832 44 1 2.2253 -4.1846 -1.9701 45 1 0.0213 -3.6706 -0.8233 46 1 -0.2200 -2.2196 -1.9357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602788751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:56 Heat of formation + Delta-G solvation = -58.351086 kcal Electronic energy + Delta-G solvation = -23565.752755 eV Core-core repulsion = 20263.669685 eV Total energy + Delta-G solvation = -3302.083070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72565 -37.75615 -36.91824 -35.12102 -34.08813 -31.96165 -30.69494 -27.54338 -27.49469 -26.68358 -25.53551 -24.79551 -22.14107 -21.08814 -20.20190 -19.45677 -18.82111 -17.08176 -16.45936 -16.19988 -15.96773 -14.81789 -14.62318 -14.47668 -14.12735 -14.03298 -13.69851 -13.35974 -13.19615 -12.77859 -12.60065 -12.45006 -12.20937 -12.02080 -12.00175 -11.57826 -11.47295 -11.29053 -11.22083 -11.10422 -10.84451 -10.81631 -10.47915 -10.42508 -10.38281 -10.36412 -9.93831 -9.81914 -9.22102 -8.97303 -8.55416 -7.90373 -7.21250 -5.86839 -3.85886 2.42629 2.76282 3.39188 3.43954 3.48607 4.51848 4.59314 4.63884 4.65887 4.79617 5.00636 5.24582 5.32156 5.34323 5.39763 5.45465 5.54309 5.61262 5.69776 5.72357 5.79292 5.84897 5.89031 6.03642 6.09515 6.13990 6.19779 6.21793 6.32975 6.43071 6.53589 6.63009 6.63768 6.70751 6.75535 6.85282 7.01683 7.22295 7.40191 7.61865 7.99006 8.06117 8.17314 8.21928 8.61646 9.06476 9.72850 11.16970 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.004514 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.728213 B = 6201.814822 C = 6997.501031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.504 5.504 3 C 0.075 3.925 4 C -0.112 4.112 5 C 0.467 3.533 6 O -0.505 6.505 7 O -0.354 6.354 8 C 0.115 3.885 9 C -0.182 4.182 10 C -0.140 4.140 11 C -0.183 4.183 12 C 0.104 3.896 13 C 0.070 3.930 14 C -0.475 4.475 15 H 0.053 0.947 16 C 0.091 3.909 17 N -0.877 5.877 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.207 4.207 23 C -0.218 4.218 24 H 0.006 0.994 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.024 0.976 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.061 0.939 40 H -0.011 1.011 41 H 0.115 0.885 42 H 0.258 0.742 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 14.386 3.838 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.227 5.227 3 C -0.053 4.053 4 C -0.150 4.150 5 C 0.311 3.689 6 O -0.393 6.393 7 O -0.272 6.272 8 C 0.079 3.921 9 C -0.239 4.239 10 C -0.197 4.197 11 C -0.241 4.241 12 C -0.023 4.023 13 C 0.069 3.931 14 C -0.512 4.512 15 H 0.071 0.929 16 C -0.112 4.112 17 N -0.515 5.515 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.246 4.246 23 C -0.256 4.256 24 H 0.024 0.976 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.042 0.958 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.007 0.993 41 H 0.132 0.868 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.935 14.484 4.025 15.539 hybrid contribution -0.022 0.249 0.130 0.282 sum -3.956 14.733 4.155 15.810 Atomic orbital electron populations 1.22469 0.89606 1.02380 0.97959 1.61604 1.05484 1.09924 1.45695 1.21763 1.01740 0.89270 0.92570 1.21483 1.02732 0.87691 1.03062 1.23883 0.76811 0.88365 0.79857 1.90555 1.38191 1.75192 1.35323 1.86575 1.72201 1.25190 1.43261 1.22127 0.93759 0.79479 0.96763 1.22482 1.00949 1.00972 0.99525 1.21840 1.02745 0.99475 0.95634 1.22492 0.93957 1.03229 1.04381 1.21740 1.01967 0.92509 0.86077 1.18900 0.92063 0.89558 0.92531 1.20227 1.06994 1.19979 1.03958 0.92868 1.24713 0.96072 0.93928 0.96524 1.69790 1.09457 1.36283 1.35936 0.86774 0.77457 0.77999 0.86277 1.20813 1.21613 1.20104 1.22968 1.01228 1.02479 0.97905 1.22946 0.91483 1.04651 1.06482 0.97584 0.90589 0.93032 0.89630 0.95765 0.88254 0.86893 0.92163 0.91305 0.89681 0.91482 0.90595 0.91584 0.89569 0.91336 0.91974 0.99255 0.86765 0.93199 0.92082 0.90499 0.90927 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.10 60.06 0.55 0.99 16 2 N -0.50 -10.57 4.32 -242.91 -1.05 -11.62 16 3 C 0.08 1.42 4.24 -3.82 -0.02 1.40 16 4 C -0.11 -1.78 5.74 -27.88 -0.16 -1.94 16 5 C 0.47 7.35 7.27 36.01 0.26 7.61 16 6 O -0.50 -8.78 11.48 -18.75 -0.22 -9.00 16 7 O -0.35 -5.04 9.89 -39.26 -0.39 -5.42 16 8 C 0.11 1.35 1.13 -90.62 -0.10 1.25 16 9 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 10 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 11 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 12 C 0.10 2.41 4.12 -3.83 -0.02 2.39 16 13 C 0.07 1.71 1.58 -155.66 -0.25 1.47 16 14 C -0.47 -12.71 8.72 -34.44 -0.30 -13.01 16 15 H 0.05 1.45 7.85 -52.49 -0.41 1.04 16 16 C 0.09 2.41 5.14 -17.82 -0.09 2.32 16 17 N -0.88 -23.76 10.88 55.43 0.60 -23.16 16 18 Si 0.89 21.07 29.56 -169.99 -5.02 16.05 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.21 -4.74 9.96 -26.70 -0.27 -5.01 16 23 C -0.22 -4.73 8.48 -26.70 -0.23 -4.96 16 24 H 0.01 0.10 8.09 -51.93 -0.42 -0.32 16 25 H 0.08 1.46 6.43 -51.93 -0.33 1.13 16 26 H 0.05 0.81 6.26 -51.93 -0.33 0.48 16 27 H 0.09 1.81 7.81 -51.93 -0.41 1.40 16 28 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.10 1.39 6.45 -51.93 -0.34 1.05 16 30 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.14 5.89 -51.93 -0.31 0.84 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.23 5.89 -51.93 -0.31 0.93 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H -0.01 -0.24 7.95 -51.93 -0.41 -0.65 16 41 H 0.11 2.94 5.70 -51.93 -0.30 2.64 16 42 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -28.09 360.93 -8.48 -36.57 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.18 Total: 3.10 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 0.34 Total: -11.96 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.45 Total: -34.78 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.60 Total: -14.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.09 -8.48 -36.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602788751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.779 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds