Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 O 1.45203 * 109.46713 * 119.99498 * 2 1 3 5 5 C 1.34225 * 116.99909 * 149.99771 * 4 2 1 6 6 O 1.20832 * 119.99839 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00503 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46723 * 32.75770 * 7 5 4 9 9 N 1.46893 * 109.47618 * 152.76342 * 7 5 4 10 10 C 1.46909 * 111.00113 * 224.06509 * 9 7 5 11 11 C 1.53001 * 109.47130 * 83.20490 * 10 9 7 12 12 C 1.50694 * 115.55080 * 39.91038 * 11 10 9 13 13 H 1.08001 * 120.00572 * 267.83609 * 12 11 10 14 14 C 1.37878 * 119.99806 * 87.83922 * 12 11 10 15 15 N 1.31520 * 119.99951 * 180.23561 * 14 12 11 16 16 Si 1.86801 * 119.99980 * 0.23162 * 14 12 11 17 17 H 1.48507 * 109.46929 * 90.26440 * 16 14 12 18 18 H 1.48500 * 109.47069 * 210.26099 * 16 14 12 19 19 H 1.48493 * 109.47296 * 330.26587 * 16 14 12 20 20 C 1.53002 * 117.49611 * 254.20843 * 11 10 9 21 21 C 1.52996 * 117.49812 * 185.58500 * 11 10 9 22 22 C 1.53004 * 109.46911 * 272.76469 * 7 5 4 23 23 C 1.52998 * 109.47069 * 57.83372 * 22 7 5 24 24 C 1.53009 * 109.46867 * 177.83534 * 22 7 5 25 25 H 1.09003 * 109.47186 * 300.00749 * 1 2 3 26 26 H 1.09005 * 109.46728 * 59.99907 * 1 2 3 27 27 H 1.08993 * 109.47182 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47244 * 239.99738 * 2 1 3 29 29 H 1.09001 * 109.47406 * 60.00000 * 3 2 1 30 30 H 1.09002 * 109.46267 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47220 * 299.99473 * 3 2 1 32 32 H 1.00905 * 111.00083 * 348.01100 * 9 7 5 33 33 H 1.08993 * 109.47113 * 203.20073 * 10 9 7 34 34 H 1.09001 * 109.46947 * 323.20478 * 10 9 7 35 35 H 0.97002 * 119.99714 * 180.02562 * 15 14 12 36 36 H 1.08999 * 117.50077 * 359.97438 * 20 11 10 37 37 H 1.09001 * 117.50246 * 145.01972 * 20 11 10 38 38 H 1.09001 * 117.50230 * 214.97686 * 21 11 10 39 39 H 1.09001 * 117.49859 * 359.97438 * 21 11 10 40 40 H 1.09000 * 109.46719 * 297.83077 * 22 7 5 41 41 H 1.09003 * 109.47136 * 60.00475 * 23 22 7 42 42 H 1.09001 * 109.46563 * 179.97438 * 23 22 7 43 43 H 1.08995 * 109.47499 * 299.99873 * 23 22 7 44 44 H 1.08996 * 109.47387 * 60.93289 * 24 22 7 45 45 H 1.08997 * 109.46678 * 180.93550 * 24 22 7 46 46 H 1.08999 * 109.46665 * 300.93478 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 3.1936 -1.3170 1.0853 6 8 3.8018 -1.2990 0.0414 7 6 3.7593 -2.0496 2.2745 8 1 2.9439 -2.4618 2.8689 9 7 4.6270 -3.1403 1.8104 10 6 4.3765 -4.3722 2.5705 11 6 3.1744 -5.1053 1.9717 12 6 3.0957 -5.1037 0.4668 13 1 2.5416 -4.3303 -0.0442 14 6 3.7313 -6.0897 -0.2577 15 7 3.6665 -6.0857 -1.5713 16 14 4.6843 -7.4311 0.6264 17 1 3.7811 -8.5754 0.9097 18 1 5.8075 -7.8876 -0.2312 19 1 5.2219 -6.8970 1.9033 20 6 1.8572 -5.0542 2.7485 21 6 2.6695 -6.3500 2.7042 22 6 4.5745 -1.0787 3.1311 23 6 3.6840 0.0855 3.5699 24 6 5.1041 -1.8096 4.3666 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 4.5127 -3.2969 0.8202 33 1 5.2554 -5.0148 2.5209 34 1 4.1679 -4.1213 3.6105 35 1 4.1133 -6.7796 -2.0810 36 1 1.8471 -4.4987 3.6862 37 1 0.9334 -5.0193 2.1710 38 1 2.2801 -7.1677 2.0977 39 1 3.1940 -6.6469 3.6125 40 1 5.4124 -0.6958 2.5485 41 1 2.8461 -0.2975 4.1525 42 1 4.2647 0.7769 4.1805 43 1 3.3068 0.6062 2.6898 44 1 5.7518 -2.6288 4.0543 45 1 5.6709 -1.1138 4.9852 46 1 4.2668 -2.2069 4.9403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602840754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -78.043768 kcal Electronic energy + Delta-G solvation = -24489.151219 eV Core-core repulsion = 21186.214210 eV Total energy + Delta-G solvation = -3302.937009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37707 -37.96158 -36.56113 -35.74061 -32.93963 -32.54539 -32.13152 -27.83086 -27.27486 -26.77907 -25.54557 -23.70421 -22.09069 -21.67577 -20.55238 -19.47613 -19.12030 -17.61334 -16.31692 -16.16810 -15.79964 -15.06603 -14.79606 -14.43481 -14.15043 -13.84852 -13.61466 -13.23691 -12.82690 -12.80352 -12.56886 -12.47242 -12.33236 -12.29183 -11.97515 -11.93332 -11.75359 -11.51353 -11.15687 -11.02777 -10.82773 -10.77200 -10.65909 -10.44578 -10.36590 -10.25149 -10.17537 -9.74861 -9.67294 -9.07687 -8.64601 -8.47470 -7.67049 -6.13962 -4.20051 2.70936 2.99724 3.29398 3.39173 3.43228 4.40831 4.72512 4.87058 4.89310 4.95206 5.01381 5.12971 5.17175 5.25218 5.33402 5.52753 5.56760 5.65935 5.71331 5.78655 5.80961 5.82846 5.89746 5.94010 6.00284 6.03499 6.07495 6.11764 6.17616 6.18170 6.22708 6.25059 6.44719 6.53522 6.56965 6.65997 6.80255 6.86516 7.02489 7.09657 7.57708 7.79520 8.20201 8.30313 8.45894 8.86885 9.48439 10.96963 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.006527 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.593833 B = 4289.040194 C = 5101.521161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.167 4.167 4 O -0.354 6.354 5 C 0.460 3.540 6 O -0.493 6.493 7 C 0.106 3.894 8 H 0.083 0.917 9 N -0.660 5.660 10 C 0.085 3.915 11 C -0.033 4.033 12 C -0.495 4.495 13 H 0.072 0.928 14 C 0.083 3.917 15 N -0.890 5.890 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.295 1.295 19 H -0.255 1.255 20 C -0.184 4.184 21 C -0.200 4.200 22 C -0.078 4.078 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.376 0.624 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.266 0.734 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 11.800 9.346 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.224 4.224 4 O -0.271 6.271 5 C 0.301 3.699 6 O -0.378 6.378 7 C -0.006 4.006 8 H 0.101 0.899 9 N -0.298 5.298 10 C -0.045 4.045 11 C -0.036 4.036 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.121 4.121 15 N -0.526 5.526 16 Si 0.714 3.286 17 H -0.207 1.207 18 H -0.222 1.222 19 H -0.179 1.179 20 C -0.221 4.221 21 C -0.238 4.238 22 C -0.098 4.098 23 C -0.210 4.210 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.203 0.797 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.706 11.936 9.154 15.139 hybrid contribution -0.521 -1.192 -0.275 1.329 sum -2.227 10.745 8.879 14.115 Atomic orbital electron populations 1.21859 0.92772 1.03326 1.02516 1.22654 0.94819 0.92394 0.88006 1.22193 1.02080 0.95568 1.02563 1.86599 1.37179 1.62827 1.40467 1.24163 0.78897 0.76269 0.90555 1.90660 1.59281 1.57456 1.30425 1.21340 0.94851 0.93043 0.91394 0.89913 1.61138 1.51092 1.04764 1.12836 1.21970 0.97575 0.90185 0.94742 1.20380 0.91752 0.96422 0.95016 1.20128 1.33926 1.12837 0.86348 0.90963 1.24997 0.95151 0.97441 0.94514 1.69911 1.42954 1.34150 1.05572 0.86774 0.79531 0.82065 0.80275 1.20750 1.22217 1.17945 1.22864 0.97311 1.01163 1.00793 1.22883 1.06193 0.92721 1.01961 1.21065 0.97945 0.94306 0.96437 1.21947 0.99693 0.97887 1.01480 1.21758 1.00949 1.00692 0.96111 0.91726 0.90776 0.91472 0.89649 0.91827 0.92049 0.91060 0.79679 0.90860 0.92881 0.92469 0.91179 0.89926 0.89686 0.90959 0.90375 0.92341 0.92597 0.92569 0.91104 0.93102 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.57 37.16 0.36 -1.37 16 2 C 0.08 1.11 3.18 -26.73 -0.09 1.02 16 3 C -0.17 -1.97 9.55 37.16 0.35 -1.62 16 4 O -0.35 -5.92 8.72 -39.24 -0.34 -6.26 16 5 C 0.46 8.75 6.08 36.00 0.22 8.96 16 6 O -0.49 -10.90 15.13 -18.76 -0.28 -11.18 16 7 C 0.11 1.85 2.10 -68.87 -0.14 1.71 16 8 H 0.08 1.45 7.04 -51.93 -0.37 1.09 16 9 N -0.66 -13.32 5.98 -107.95 -0.65 -13.97 16 10 C 0.08 1.70 5.01 -3.82 -0.02 1.68 16 11 C -0.03 -0.75 0.97 -155.66 -0.15 -0.90 16 12 C -0.50 -13.40 7.68 -34.44 -0.26 -13.66 16 13 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 16 Si 0.89 21.58 24.98 -169.99 -4.25 17.33 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -5.83 5.44 56.52 0.31 -5.52 16 20 C -0.18 -3.67 9.51 -26.73 -0.25 -3.93 16 21 C -0.20 -4.16 7.52 -26.73 -0.20 -4.37 16 22 C -0.08 -1.12 2.69 -90.61 -0.24 -1.36 16 23 C -0.15 -1.86 8.75 37.16 0.33 -1.53 16 24 C -0.14 -1.76 8.05 37.16 0.30 -1.46 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.44 7.16 -51.93 -0.37 1.07 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.38 9.00 5.55 -39.29 -0.22 8.78 16 33 H 0.07 1.53 6.52 -51.93 -0.34 1.19 16 34 H 0.05 0.92 6.34 -51.93 -0.33 0.60 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.08 1.89 7.08 -51.93 -0.37 1.53 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.73 6.46 -51.93 -0.34 0.39 16 44 H 0.07 0.99 6.94 -51.93 -0.36 0.63 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -29.99 357.88 -7.51 -37.50 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.25 Total: 11.86 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.13 Total: -40.05 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.63 Total: -17.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.25 Total: 17.33 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.99 -7.51 -37.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602840754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.549 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds