Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 C 1.53002 * 109.47503 * 240.00164 * 2 1 3 5 5 O 1.45203 * 109.47282 * 119.99337 * 2 1 3 6 6 C 1.34235 * 116.99297 * 59.31762 * 5 2 1 7 7 O 1.20820 * 120.00092 * 5.24815 * 6 5 2 8 8 C 1.50700 * 119.99307 * 185.24376 * 6 5 2 9 9 C 1.53005 * 109.46919 * 173.87571 * 8 6 5 10 10 N 1.46500 * 109.46967 * 56.14300 * 9 8 6 11 11 C 1.36938 * 120.00251 * 60.96649 * 10 9 8 12 12 H 1.08000 * 119.99446 * 354.16768 * 11 10 9 13 13 C 1.38809 * 120.00252 * 174.16806 * 11 10 9 14 14 N 1.31627 * 119.99643 * 5.67833 * 13 11 10 15 15 Si 1.86792 * 120.00056 * 185.67899 * 13 11 10 16 16 H 1.48499 * 109.47283 * 84.97791 * 15 13 11 17 17 H 1.48505 * 109.47281 * 204.97568 * 15 13 11 18 18 H 1.48495 * 109.47132 * 324.97298 * 15 13 11 19 19 C 1.52995 * 109.47356 * 176.14262 * 9 8 6 20 20 C 1.52998 * 109.47158 * 179.97438 * 19 9 8 21 21 C 1.52998 * 109.47489 * 300.00125 * 20 19 9 22 22 C 1.53002 * 109.46719 * 60.00167 * 21 20 19 23 23 C 1.52998 * 109.46671 * 296.14338 * 9 8 6 24 24 H 1.08995 * 109.47365 * 295.89231 * 1 2 3 25 25 H 1.08997 * 109.47167 * 55.90000 * 1 2 3 26 26 H 1.09010 * 109.46649 * 175.89331 * 1 2 3 27 27 H 1.09001 * 109.47666 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47100 * 299.99788 * 3 2 1 29 29 H 1.09003 * 109.47401 * 59.99272 * 3 2 1 30 30 H 1.09007 * 109.46546 * 299.99722 * 4 2 1 31 31 H 1.08998 * 109.46837 * 59.99412 * 4 2 1 32 32 H 1.09000 * 109.47264 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47186 * 53.87610 * 8 6 5 34 34 H 1.09004 * 109.47353 * 293.87149 * 8 6 5 35 35 H 0.97003 * 119.99860 * 241.23698 * 10 9 8 36 36 H 0.96999 * 119.99384 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47476 * 300.00286 * 19 9 8 38 38 H 1.09004 * 109.47125 * 59.99990 * 19 9 8 39 39 H 1.09007 * 109.46998 * 179.97438 * 20 19 9 40 40 H 1.08996 * 109.46683 * 60.00583 * 20 19 9 41 41 H 1.08997 * 109.46793 * 299.99860 * 21 20 19 42 42 H 1.09003 * 109.46835 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.46696 * 180.02562 * 22 21 20 44 44 H 1.08990 * 109.47462 * 60.00016 * 22 21 20 45 45 H 1.08996 * 109.47623 * 299.99810 * 23 9 8 46 46 H 1.09000 * 109.47274 * 60.00406 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6843 1.1856 6 6 1.6417 -1.9641 1.3451 7 8 1.0147 -2.5235 0.4770 8 6 2.0059 -2.7030 2.6070 9 6 1.3382 -4.0797 2.6027 10 7 1.7274 -4.8073 1.3922 11 6 3.0458 -5.0966 1.1614 12 1 3.8074 -4.7081 1.8213 13 6 3.4034 -5.8892 0.0793 14 7 2.4894 -6.2701 -0.7879 15 14 5.1815 -6.4151 -0.1460 16 1 5.4411 -7.6386 0.6545 17 1 5.4355 -6.6996 -1.5812 18 1 6.0816 -5.3254 0.3094 19 6 1.7842 -4.8668 3.8365 20 6 1.1160 -6.2431 3.8324 21 6 -0.4041 -6.0722 3.8587 22 6 -0.8501 -5.2851 2.6247 23 6 -0.1820 -3.9091 2.6286 24 1 -0.3634 0.4487 0.9244 25 1 -0.3633 0.5761 -0.8509 26 1 -0.3633 -1.0251 -0.0736 27 1 3.1299 1.4427 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.6629 -2.1356 3.4722 34 1 3.0880 -2.8242 2.6577 35 1 1.0516 -5.0808 0.7523 36 1 2.7394 -6.8236 -1.5442 37 1 2.8672 -4.9882 3.8181 38 1 1.4946 -4.3253 4.7372 39 1 1.4342 -6.8041 4.7113 40 1 1.4053 -6.7847 2.9319 41 1 -0.6933 -5.5306 4.7593 42 1 -0.8801 -7.0528 3.8553 43 1 -1.9331 -5.1630 2.6437 44 1 -0.5609 -5.8267 1.7242 45 1 -0.4717 -3.3677 3.5292 46 1 -0.4998 -3.3484 1.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602877709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = -92.953889 kcal Electronic energy + Delta-G solvation = -24882.788420 eV Core-core repulsion = 21579.204860 eV Total energy + Delta-G solvation = -3303.583560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30531 -38.55185 -36.17683 -33.65767 -33.55157 -31.76905 -30.09862 -28.91288 -27.25531 -27.07662 -26.84518 -23.60891 -22.28437 -21.87075 -20.27136 -18.92814 -18.13693 -16.97408 -16.43879 -15.88985 -15.47660 -14.92737 -14.48150 -14.07267 -13.77822 -13.71629 -13.60112 -13.29108 -13.03230 -12.64342 -12.32251 -12.16699 -11.77429 -11.66611 -11.62334 -11.58401 -11.53305 -11.34584 -11.16119 -10.86353 -10.80898 -10.75955 -10.62767 -10.39780 -10.08476 -9.96624 -9.91157 -9.63399 -9.52456 -9.29563 -8.95775 -8.70419 -6.77757 -5.65048 -2.90413 3.11620 3.28714 3.47254 3.52455 3.54034 4.66678 4.96865 4.98544 5.14656 5.25819 5.30908 5.39701 5.51524 5.59651 5.67545 5.70899 5.73731 5.82045 5.82086 5.92111 5.94546 6.05688 6.07599 6.10867 6.14663 6.17342 6.22608 6.29825 6.31575 6.42008 6.44539 6.50831 6.61165 6.67863 6.78032 6.91880 6.95275 7.00509 7.11903 7.28100 7.30784 7.78017 8.53308 8.70594 9.66125 10.27729 10.64571 11.57097 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.007740 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.277761 B = 3616.925952 C = 5041.211318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.368 6.368 6 C 0.466 3.534 7 O -0.465 6.465 8 C -0.123 4.123 9 C 0.216 3.784 10 N -0.696 5.696 11 C -0.230 4.230 12 H 0.065 0.935 13 C -0.009 4.009 14 N -0.924 5.924 15 Si 0.894 3.106 16 H -0.291 1.291 17 H -0.294 1.294 18 H -0.285 1.285 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.390 0.610 36 H 0.252 0.748 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 10.839 6.578 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.287 6.287 6 C 0.308 3.692 7 O -0.349 6.349 8 C -0.163 4.163 9 C 0.123 3.877 10 N -0.337 5.337 11 C -0.362 4.362 12 H 0.083 0.917 13 C -0.205 4.205 14 N -0.572 5.572 15 Si 0.726 3.274 16 H -0.219 1.219 17 H -0.221 1.221 18 H -0.211 1.211 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.225 0.775 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.938 10.631 6.234 13.276 hybrid contribution 0.992 -0.299 -0.534 1.166 sum -3.945 10.332 5.700 12.442 Atomic orbital electron populations 1.22421 0.94679 1.04533 1.01854 1.21976 0.93819 0.91847 0.84187 1.21820 1.02031 0.93403 1.02280 1.22507 1.01557 1.04106 0.95823 1.86544 1.70386 1.27211 1.44581 1.23532 0.76938 0.79257 0.89490 1.90562 1.35948 1.66817 1.41591 1.22155 1.04251 0.97875 0.92058 1.19316 0.91373 0.87938 0.89101 1.42343 1.05826 1.65443 1.20125 1.19054 0.84526 1.24225 1.08380 0.91731 1.24648 0.96703 1.01151 0.98029 1.69692 1.31814 1.40993 1.14717 0.86400 0.85599 0.78620 0.76746 1.21887 1.22095 1.21132 1.21858 1.00655 0.96247 0.96810 1.21368 0.93997 0.97394 1.01908 1.21482 0.96914 0.99042 0.97542 1.21427 0.98007 0.96416 0.99184 1.21789 0.95438 0.97282 1.01214 0.92506 0.91686 0.89840 0.91774 0.90977 0.91965 0.88492 0.92171 0.92415 0.90202 0.88436 0.77465 0.93840 0.91949 0.93945 0.93907 0.89878 0.93357 0.93170 0.93533 0.90771 0.93151 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.30 37.16 0.31 -2.15 16 2 C 0.12 1.77 1.13 -90.62 -0.10 1.67 16 3 C -0.14 -1.60 8.85 37.16 0.33 -1.27 16 4 C -0.18 -3.00 8.38 37.16 0.31 -2.69 16 5 O -0.37 -6.41 9.89 -39.27 -0.39 -6.79 16 6 C 0.47 8.92 6.73 36.01 0.24 9.16 16 7 O -0.47 -9.97 8.63 -18.74 -0.16 -10.13 16 8 C -0.12 -2.18 4.65 -27.88 -0.13 -2.31 16 9 C 0.22 4.08 0.34 -131.82 -0.04 4.04 16 10 N -0.70 -16.49 2.48 -47.23 -0.12 -16.61 16 11 C -0.23 -6.08 8.68 -15.06 -0.13 -6.21 16 12 H 0.06 1.67 6.76 -52.49 -0.35 1.31 16 13 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 14 N -0.92 -27.75 13.07 55.49 0.73 -27.03 16 15 Si 0.89 22.45 29.56 -169.99 -5.02 17.43 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.12 -2.04 4.55 -26.73 -0.12 -2.16 16 20 C -0.11 -1.91 5.77 -26.73 -0.15 -2.07 16 21 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 22 C -0.11 -1.90 5.75 -26.75 -0.15 -2.06 16 23 C -0.12 -2.06 4.50 -26.75 -0.12 -2.18 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.36 6.14 -51.92 -0.32 1.04 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.96 5.76 -51.93 -0.30 1.66 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.81 7.35 -51.93 -0.38 1.43 16 35 H 0.39 10.33 6.47 -40.82 -0.26 10.06 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 37 H 0.06 1.17 7.34 -51.93 -0.38 0.79 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.08 1.76 7.60 -51.93 -0.39 1.37 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.47 6.89 -51.93 -0.36 1.11 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.36 6.08 -51.93 -0.32 1.04 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -29.46 346.68 -7.88 -37.34 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.12 Total: 11.06 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.02 Total: -10.49 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.61 Total: -43.63 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.55 Total: -16.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.46 -7.88 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602877709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.610 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds