Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47506 * 2 1 4 4 C 1.53005 * 109.46887 * 120.00063 * 2 1 3 5 5 H 1.08996 * 109.47311 * 185.76036 * 4 2 1 6 6 C 1.50704 * 109.46539 * 305.75843 * 4 2 1 7 7 O 1.20834 * 119.99762 * 120.00631 * 6 4 2 8 8 O 1.34222 * 120.00432 * 299.72480 * 6 4 2 9 9 C 1.45197 * 117.00111 * 180.28237 * 8 6 4 10 10 C 1.53001 * 109.47239 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47472 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47243 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99986 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00196 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99470 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00486 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46908 * 90.00147 * 16 14 12 18 18 H 1.48495 * 109.47452 * 210.00595 * 16 14 12 19 19 H 1.48500 * 109.46852 * 330.00221 * 16 14 12 20 20 N 1.46895 * 109.47516 * 65.75726 * 4 2 1 21 21 C 1.48537 * 110.99737 * 59.46596 * 20 4 2 22 22 C 1.54942 * 103.22687 * 159.72230 * 21 20 4 23 23 C 1.54595 * 102.92111 * 322.58796 * 22 21 20 24 24 C 1.47900 * 111.00487 * 176.86440 * 20 4 2 25 25 H 1.08993 * 109.47434 * 300.00458 * 1 2 3 26 26 H 1.09003 * 109.47226 * 60.00079 * 1 2 3 27 27 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47096 * 239.99561 * 2 1 3 29 29 H 1.08995 * 109.47621 * 172.50642 * 3 2 1 30 30 H 1.09005 * 109.46869 * 292.50902 * 3 2 1 31 31 H 1.09003 * 109.46823 * 52.49937 * 3 2 1 32 32 H 1.09005 * 109.46981 * 299.99468 * 9 8 6 33 33 H 1.08992 * 109.47352 * 59.99810 * 9 8 6 34 34 H 1.09005 * 109.46558 * 299.99554 * 10 9 8 35 35 H 1.09004 * 109.47344 * 59.99252 * 10 9 8 36 36 H 1.08996 * 109.47125 * 300.00186 * 11 10 9 37 37 H 1.09001 * 109.46920 * 60.00011 * 11 10 9 38 38 H 0.96997 * 119.99249 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.67090 * 278.15520 * 21 20 4 40 40 H 1.09003 * 110.66474 * 41.29211 * 21 20 4 41 41 H 1.08996 * 110.72231 * 204.23390 * 22 21 20 42 42 H 1.08997 * 110.87667 * 81.01875 * 22 21 20 43 43 H 1.09006 * 110.31370 * 263.04635 * 23 22 21 44 44 H 1.08994 * 110.30965 * 140.87317 * 23 22 21 45 45 H 1.09000 * 109.91118 * 333.51356 * 24 20 4 46 46 H 1.09000 * 109.91587 * 94.80191 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1250 -0.6329 1.3024 6 6 1.4245 -0.0979 2.4755 7 8 0.7449 -0.7673 3.2173 8 8 1.6357 1.1996 2.7468 9 6 1.0169 1.7311 3.9480 10 6 1.3671 3.2139 4.0888 11 6 0.7146 3.7742 5.3541 12 6 1.0600 5.2344 5.4931 13 1 1.6823 5.7149 4.7526 14 6 0.5807 5.9573 6.5648 15 7 -0.1775 5.3722 7.4662 16 14 1.0094 7.7672 6.7375 17 1 -0.0164 8.5872 6.0442 18 1 1.0455 8.1324 8.1764 19 1 2.3401 8.0209 6.1291 20 7 1.6670 -2.1405 1.1819 21 6 2.2464 -2.7864 -0.0237 22 6 2.2161 -4.2940 0.3326 23 6 2.5609 -4.3001 1.8396 24 6 2.2085 -2.8864 2.3386 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1217 1.4454 0.1340 30 1 1.7902 1.9161 -0.9494 31 1 1.5713 1.9935 0.8153 32 1 -0.0651 1.6187 3.8796 33 1 1.3845 1.1865 4.8176 34 1 2.4491 3.3267 4.1570 35 1 0.9992 3.7583 3.2190 36 1 -0.3673 3.6613 5.2855 37 1 1.0822 3.2299 6.2240 38 1 -0.5144 5.8807 8.2204 39 1 1.6311 -2.5860 -0.9008 40 1 3.2705 -2.4500 -0.1857 41 1 2.9678 -4.8402 -0.2372 42 1 1.2246 -4.7135 0.1621 43 1 3.6230 -4.4983 1.9840 44 1 1.9617 -5.0458 2.3618 45 1 3.1041 -2.3910 2.7135 46 1 1.4572 -2.9471 3.1260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741013547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = -104.504107 kcal Electronic energy + Delta-G solvation = -23179.225515 eV Core-core repulsion = 19875.141099 eV Total energy + Delta-G solvation = -3304.084415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79306 -38.87569 -36.28658 -35.87836 -33.94243 -31.67336 -31.45042 -29.13315 -27.61240 -27.07492 -26.22333 -23.41822 -22.12278 -21.62818 -20.68263 -20.35906 -19.39595 -17.32897 -17.04061 -16.34539 -16.22537 -16.08860 -15.43973 -14.76926 -14.46822 -14.06112 -13.91235 -13.58951 -13.30708 -13.25145 -12.56684 -12.44964 -12.39460 -12.17179 -12.02978 -11.93015 -11.81351 -11.58941 -11.40683 -11.04631 -10.98993 -10.95684 -10.89089 -10.77331 -10.62824 -10.55867 -10.29749 -10.09642 -9.69813 -9.47099 -9.15822 -8.65357 -8.38504 -6.03291 -4.06305 2.42087 2.76114 3.30996 3.37150 3.40569 3.71223 4.34292 4.40831 4.44500 4.62267 4.68140 4.76110 4.92328 5.00381 5.10729 5.17605 5.27231 5.32667 5.40052 5.44793 5.55037 5.57637 5.60409 5.65601 5.66327 5.73975 5.84999 5.88884 5.91770 5.96172 6.02341 6.03752 6.27959 6.37483 6.53917 6.55238 6.63239 6.69467 6.88960 7.00220 7.60834 7.72013 7.95087 8.04821 8.36445 9.00051 9.57946 11.08196 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031772 B = 0.003061 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.066622 B = 9146.534106 C = 9648.838122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.088 3.912 5 H 0.076 0.924 6 C 0.464 3.536 7 O -0.496 6.496 8 O -0.354 6.354 9 C 0.067 3.933 10 C -0.107 4.107 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.497 5.497 21 C 0.035 3.965 22 C -0.122 4.122 23 C -0.131 4.131 24 C 0.035 3.965 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -17.523 -17.259 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.215 4.215 4 C -0.022 4.022 5 H 0.093 0.907 6 C 0.306 3.694 7 O -0.383 6.383 8 O -0.270 6.270 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.222 5.222 21 C -0.092 4.092 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.092 4.092 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.274 -17.659 -16.820 24.951 hybrid contribution 1.005 1.043 0.467 1.521 sum 6.279 -16.616 -16.353 24.144 Atomic orbital electron populations 1.21814 0.93926 1.02720 1.01744 1.21116 0.97359 0.96501 0.95021 1.22022 1.01390 0.95024 1.03061 1.21601 0.98423 0.89633 0.92553 0.90674 1.23170 0.78853 0.81186 0.86209 1.90639 1.36053 1.62747 1.48854 1.86538 1.69438 1.25519 1.45538 1.23479 0.97419 0.96391 0.83291 1.21750 1.01520 0.89561 1.01675 1.19045 0.95951 0.95739 0.90563 1.21171 1.31453 0.94755 1.08551 0.92448 1.25034 0.95098 0.98571 0.95784 1.69971 1.34422 1.36376 1.12596 0.86550 0.78856 0.85126 0.77220 1.20602 1.21196 1.19818 1.64583 1.55429 0.99504 1.02718 1.23287 0.98041 0.93993 0.93869 1.22462 1.02303 0.95496 0.95745 1.22425 1.01231 0.97120 0.96188 1.22967 0.98938 0.92905 0.94405 0.92852 0.92506 0.91384 0.90039 0.92591 0.92304 0.90131 0.91611 0.91740 0.92246 0.92180 0.96259 0.96303 0.92897 0.89576 0.93520 0.91011 0.90564 0.91610 0.90845 0.94210 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.75 37.16 0.33 -1.31 16 2 C -0.08 -0.84 2.55 -90.62 -0.23 -1.07 16 3 C -0.16 -1.67 8.62 37.15 0.32 -1.35 16 4 C 0.09 1.05 1.47 -68.86 -0.10 0.95 16 5 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 6 C 0.46 7.26 5.45 36.01 0.20 7.46 16 7 O -0.50 -9.04 14.32 -18.76 -0.27 -9.31 16 8 O -0.35 -5.87 7.55 -39.24 -0.30 -6.17 16 9 C 0.07 1.25 5.47 37.16 0.20 1.46 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 11 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 12 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 N -0.50 -5.60 4.36 -223.88 -0.98 -6.57 16 21 C 0.04 0.29 5.39 -1.89 -0.01 0.28 16 22 C -0.12 -0.88 7.06 -24.87 -0.18 -1.06 16 23 C -0.13 -1.09 6.93 -25.37 -0.18 -1.27 16 24 C 0.04 0.40 5.48 -2.75 -0.02 0.38 16 25 H 0.05 0.73 7.05 -51.93 -0.37 0.36 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 28 H 0.08 0.68 6.63 -51.93 -0.34 0.34 16 29 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 32 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 0.64 7.52 -51.93 -0.39 0.25 16 40 H 0.05 0.35 8.00 -51.93 -0.42 -0.07 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 46 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -31.01 360.16 -9.21 -40.22 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.45 Total: -3.02 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.36 Total: -10.95 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: -0.24 Total: -32.80 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.56 Total: -15.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.01 -9.21 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741013547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.284 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds