Wall clock time and date at job start Tue Mar 31 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 C 1.53005 * 109.47387 * 119.99788 * 2 1 3 5 5 N 1.46505 * 109.46643 * 64.99756 * 4 2 1 6 6 C 1.46492 * 120.00239 * 269.99949 * 5 4 2 7 7 C 1.50704 * 109.47223 * 270.00387 * 6 5 4 8 8 H 1.07995 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99677 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00452 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99483 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47635 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47252 * 120.00428 * 11 9 7 14 14 H 1.48505 * 109.46896 * 240.00011 * 11 9 7 15 15 C 1.34780 * 119.99876 * 90.00601 * 5 4 2 16 16 O 1.21274 * 120.00170 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99931 * 359.97438 * 15 5 4 18 18 O 1.42897 * 109.47084 * 180.02562 * 17 15 5 19 19 C 1.42898 * 114.00017 * 179.97438 * 18 17 15 20 20 C 1.54894 * 110.48190 * 93.24436 * 19 18 17 21 21 C 1.55238 * 102.58338 * 156.67678 * 20 19 18 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47308 * 299.99880 * 1 2 3 26 26 H 1.08994 * 109.47479 * 60.00190 * 1 2 3 27 27 H 1.09006 * 109.47273 * 239.99570 * 2 1 3 28 28 H 1.09003 * 109.47621 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46993 * 300.00375 * 3 2 1 30 30 H 1.09000 * 109.47466 * 59.99915 * 3 2 1 31 31 H 1.08994 * 109.46974 * 305.00098 * 4 2 1 32 32 H 1.09001 * 109.47521 * 184.99738 * 4 2 1 33 33 H 1.09004 * 109.47283 * 30.00132 * 6 5 4 34 34 H 1.09000 * 109.47431 * 150.00749 * 6 5 4 35 35 H 0.97000 * 119.99926 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47134 * 60.00350 * 17 15 5 37 37 H 1.08999 * 109.46878 * 300.00538 * 17 15 5 38 38 H 1.09002 * 110.43427 * 330.70321 * 19 18 17 39 39 H 1.08996 * 110.75388 * 275.06031 * 20 19 18 40 40 H 1.08993 * 110.76071 * 38.44257 * 20 19 18 41 41 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 42 42 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 43 43 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 44 44 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 45 45 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 46 46 H 1.08996 * 110.07773 * 119.30576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5717 -2.9408 3.2076 8 1 1.5509 -2.8645 3.6566 9 6 -0.4983 -3.3811 3.9575 10 7 -1.6906 -3.4745 3.4107 11 14 -0.2541 -3.8451 5.7505 12 1 1.1708 -3.6531 6.1219 13 1 -1.1095 -2.9837 6.6056 14 1 -0.6294 -5.2682 5.9490 15 6 2.4715 -3.0331 0.6116 16 8 2.1508 -4.2017 0.5634 17 6 3.7858 -2.5875 0.0241 18 8 4.4680 -3.7156 -0.5271 19 6 5.7325 -3.4007 -1.1136 20 6 6.8713 -3.5908 -0.0810 21 6 8.1138 -3.8121 -0.9848 22 6 7.5828 -4.6607 -2.1586 23 6 6.0688 -4.3991 -2.2404 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 -0.3484 -1.7531 1.6919 34 1 0.0042 -3.4298 1.2094 35 1 -2.4432 -3.7847 3.9382 36 1 4.3990 -2.1377 0.8050 37 1 3.6027 -1.8545 -0.7615 38 1 5.7308 -2.3800 -1.4962 39 1 6.9904 -2.6972 0.5316 40 1 6.6858 -4.4658 0.5419 41 1 8.8884 -4.3540 -0.4421 42 1 8.4991 -2.8588 -1.3469 43 1 7.7695 -5.7178 -1.9694 44 1 8.0650 -4.3571 -3.0879 45 1 5.5205 -5.3293 -2.0910 46 1 5.8153 -3.9681 -3.2090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751380304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:29 Heat of formation + Delta-G solvation = -104.925700 kcal Electronic energy + Delta-G solvation = -23306.987666 eV Core-core repulsion = 20002.884969 eV Total energy + Delta-G solvation = -3304.102697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47345 -38.51758 -36.42032 -35.64178 -33.51698 -32.29256 -29.26144 -28.78774 -27.72838 -26.84457 -26.30961 -25.26401 -22.52059 -20.82600 -20.41768 -20.24419 -18.48451 -17.11645 -16.52011 -16.36329 -15.63261 -15.46017 -15.29707 -14.56108 -14.50565 -14.11677 -13.89132 -13.47713 -13.20517 -12.93347 -12.59925 -12.33410 -12.11238 -12.04153 -11.96446 -11.52854 -11.47851 -11.36355 -11.28984 -11.21356 -10.95555 -10.92165 -10.70857 -10.67960 -10.54119 -10.47086 -10.27188 -10.10169 -9.54967 -9.40670 -8.79323 -8.39933 -7.61288 -6.01615 -4.05655 3.31541 3.35480 3.39714 3.43657 3.46240 4.25280 4.45854 4.49031 4.51179 4.79890 5.00391 5.03695 5.12694 5.16692 5.29869 5.32171 5.32968 5.35974 5.39498 5.47176 5.54505 5.55519 5.68996 5.73611 5.78976 5.81288 5.86806 5.89171 6.07390 6.09109 6.11101 6.14403 6.16682 6.18880 6.29837 6.54391 6.69548 7.06122 7.33884 7.47666 7.59779 7.95473 8.27320 8.43267 8.93961 9.13671 9.59193 11.06358 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004567 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.074816 B = 6129.059825 C = 7366.079057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.244 3.756 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.506 3.494 16 O -0.521 6.521 17 C 0.045 3.955 18 O -0.352 6.352 19 C 0.080 3.920 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 7.883 -10.277 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.201 4.201 4 C -0.011 4.011 5 N -0.327 5.327 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.291 3.709 16 O -0.396 6.396 17 C -0.035 4.035 18 O -0.270 6.270 19 C 0.022 3.978 20 C -0.187 4.187 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.161 4.161 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.960 6.990 -10.251 19.436 hybrid contribution 0.169 0.143 1.074 1.096 sum 15.129 7.133 -9.178 19.079 Atomic orbital electron populations 1.21924 0.94466 1.03173 1.01006 1.21607 0.97308 0.95799 0.98783 1.21782 1.00446 0.96012 1.01868 1.21571 0.98834 0.82497 0.98164 1.48157 1.21790 1.06107 1.56678 1.19415 0.78406 0.96454 0.93231 1.21499 0.95080 1.44299 0.95544 0.92474 1.24918 0.95057 0.95427 0.98669 1.69934 0.99814 1.47126 1.36503 0.86466 0.78128 0.78248 0.84715 1.19837 1.21011 1.20895 1.19935 0.85001 0.86476 0.79511 1.90692 1.74407 1.17263 1.57229 1.22416 0.93682 0.89386 0.98023 1.88083 1.31570 1.31204 1.76126 1.23047 0.83534 0.98168 0.93068 1.23078 0.94766 1.02659 0.98158 1.22323 0.97352 0.99934 0.96433 1.22077 0.95018 1.00403 0.98437 1.22169 0.95988 1.00501 0.97406 0.91189 0.92449 0.93602 0.91680 0.93003 0.92807 0.92401 0.89702 0.91950 0.93986 0.94036 0.92817 0.91171 0.91205 0.91741 0.91494 0.90163 0.91481 0.91653 0.91527 0.91763 0.90160 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.18 37.15 0.30 -1.93 16 2 C -0.12 -1.56 3.12 -90.62 -0.28 -1.84 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 4 C 0.11 1.81 4.70 -4.04 -0.02 1.79 16 5 N -0.59 -12.56 2.28 -175.06 -0.40 -12.96 16 6 C 0.24 6.33 4.23 -5.20 -0.02 6.31 16 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 11 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.51 11.05 7.75 -10.98 -0.09 10.96 16 16 O -0.52 -14.09 16.08 -14.35 -0.23 -14.32 16 17 C 0.04 0.73 4.82 36.01 0.17 0.90 16 18 O -0.35 -6.05 9.59 -55.14 -0.53 -6.58 16 19 C 0.08 0.99 3.33 -25.07 -0.08 0.91 16 20 C -0.15 -1.65 6.65 -24.55 -0.16 -1.81 16 21 C -0.12 -1.07 6.84 -24.88 -0.17 -1.24 16 22 C -0.12 -1.08 6.80 -25.62 -0.17 -1.25 16 23 C -0.12 -1.36 6.56 -25.62 -0.17 -1.53 16 24 H 0.07 1.27 5.89 -51.93 -0.31 0.96 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 33 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.99 7.40 -51.93 -0.38 0.61 16 37 H 0.07 0.94 7.22 -51.93 -0.38 0.56 16 38 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -33.64 364.56 -9.06 -42.70 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.34 Total: -1.96 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.77 Total: -3.53 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.34 Total: -38.87 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.76 Total: -20.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.64 -9.06 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.227 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds