Wall clock time and date at job start Tue Mar 31 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53003 * 109.47023 * 119.99324 * 2 1 3 5 5 N 1.46495 * 109.47553 * 174.28567 * 4 2 1 6 6 C 1.46501 * 120.00238 * 276.79335 * 5 4 2 7 7 C 1.50695 * 109.47140 * 269.99919 * 6 5 4 8 8 H 1.08001 * 120.00274 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99827 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00712 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99903 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47328 * 90.00115 * 11 9 7 13 13 H 1.48497 * 109.47358 * 209.99916 * 11 9 7 14 14 H 1.48499 * 109.47097 * 330.00039 * 11 9 7 15 15 C 1.34773 * 120.00218 * 96.79001 * 5 4 2 16 16 O 1.21282 * 120.00411 * 185.20620 * 15 5 4 17 17 C 1.50709 * 119.99673 * 5.20960 * 15 5 4 18 18 C 1.53001 * 109.46878 * 176.12781 * 17 15 5 19 19 C 1.53002 * 109.47254 * 60.00229 * 18 17 15 20 20 O 1.42897 * 109.47204 * 299.99866 * 18 17 15 21 21 C 1.53003 * 109.47012 * 179.97438 * 18 17 15 22 22 C 1.52995 * 117.51651 * 111.28349 * 21 18 17 23 23 C 1.52994 * 117.49877 * 179.91359 * 21 18 17 24 24 H 1.08996 * 109.47704 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46786 * 60.00293 * 1 2 3 26 26 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47704 * 239.99474 * 2 1 3 28 28 H 1.08997 * 109.47257 * 184.63134 * 3 2 1 29 29 H 1.09001 * 109.47112 * 304.62863 * 3 2 1 30 30 H 1.09007 * 109.47238 * 64.62852 * 3 2 1 31 31 H 1.09007 * 109.46730 * 54.28568 * 4 2 1 32 32 H 1.09005 * 109.47512 * 294.29127 * 4 2 1 33 33 H 1.09008 * 109.46709 * 29.99679 * 6 5 4 34 34 H 1.09001 * 109.47297 * 149.99291 * 6 5 4 35 35 H 0.96996 * 120.00849 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47352 * 56.13126 * 17 15 5 37 37 H 1.08996 * 109.46784 * 296.12710 * 17 15 5 38 38 H 1.08996 * 109.47422 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.46816 * 299.99898 * 19 18 17 40 40 H 1.08996 * 109.47470 * 59.99421 * 19 18 17 41 41 H 0.96697 * 113.99901 * 300.00273 * 20 18 17 42 42 H 1.08998 * 115.55105 * 325.58622 * 21 18 17 43 43 H 1.09002 * 117.50022 * 214.97423 * 22 21 18 44 44 H 1.09007 * 117.50132 * 359.97438 * 22 21 18 45 45 H 1.08993 * 117.50216 * 359.97438 * 23 21 18 46 46 H 1.08999 * 117.49978 * 144.97807 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.4984 -0.8414 1.1827 6 6 4.1093 -1.9375 0.4266 7 6 4.3050 -3.1252 1.3331 8 1 4.0049 -3.0692 2.3691 9 6 4.8673 -4.2835 0.8400 10 7 5.2324 -4.3521 -0.4216 11 14 5.1106 -5.7556 1.9640 12 1 3.9023 -6.6178 1.9192 13 1 6.2913 -6.5343 1.5113 14 1 5.3317 -5.2852 3.3550 15 6 4.2784 0.0562 1.8170 16 8 5.4832 0.0132 1.6850 17 6 3.6533 1.1135 2.6903 18 6 4.7543 1.9356 3.3631 19 6 5.6184 2.6043 2.2920 20 8 5.5683 1.0765 4.1639 21 6 4.1198 3.0094 4.2493 22 6 4.2782 2.8605 5.7637 23 6 5.0616 3.9406 5.0151 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1268 1.4436 -0.0830 29 1 1.6106 1.9797 -0.8456 30 1 1.7460 1.9319 0.9286 31 1 1.5954 -1.7150 1.3020 32 1 1.7625 -0.1516 2.1364 33 1 3.4567 -2.2158 -0.4011 34 1 5.0745 -1.6156 0.0358 35 1 5.6283 -5.1669 -0.7684 36 1 3.0377 0.6373 3.4534 37 1 3.0324 1.7688 2.0794 38 1 6.4031 3.1896 2.7713 39 1 6.0705 1.8395 1.6604 40 1 4.9975 3.2596 1.6812 41 1 5.0853 0.6184 4.8652 42 1 3.1851 3.4316 3.8801 43 1 3.4477 3.1846 6.3909 44 1 4.8342 1.9971 6.1291 45 1 6.1333 3.7880 4.8881 46 1 4.7468 4.9754 5.1495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755700561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:28 Heat of formation + Delta-G solvation = -71.468126 kcal Electronic energy + Delta-G solvation = -24140.077252 eV Core-core repulsion = 20837.425384 eV Total energy + Delta-G solvation = -3302.651868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92343 -38.34562 -36.26283 -34.84326 -33.63675 -32.24222 -31.72564 -28.52453 -27.11536 -26.82273 -25.36608 -23.77395 -22.38017 -22.24391 -20.20306 -19.72563 -18.25580 -16.99872 -16.40960 -16.16625 -15.89726 -15.21286 -14.89522 -14.50855 -14.15827 -14.02994 -13.79211 -13.17115 -13.14996 -12.70157 -12.43227 -12.26922 -12.13939 -12.00019 -11.73898 -11.59006 -11.35667 -11.26994 -11.16595 -10.89132 -10.85481 -10.83211 -10.71040 -10.52593 -10.49287 -10.36667 -10.07670 -10.00491 -9.66029 -9.54351 -8.59170 -8.39687 -7.52456 -6.00391 -4.04857 3.31809 3.38743 3.42458 3.54164 3.69219 3.95970 4.43419 4.51592 4.68035 4.84362 4.89652 5.01649 5.06543 5.14035 5.28293 5.32806 5.33482 5.38039 5.53795 5.56679 5.64853 5.70138 5.73110 5.80366 5.87404 5.96158 5.97497 6.00356 6.07452 6.08737 6.20021 6.24853 6.27652 6.31953 6.46399 6.57331 6.82283 7.14415 7.52300 7.64500 7.96816 7.97723 8.28983 8.53306 8.95908 9.23733 9.60464 11.07487 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.005767 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.215279 B = 4853.820155 C = 6116.225099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.511 3.489 16 O -0.522 6.522 17 C -0.176 4.176 18 C 0.181 3.819 19 C -0.149 4.149 20 O -0.538 6.538 21 C -0.184 4.184 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.365 0.635 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 14.978 6.589 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.205 4.205 4 C -0.008 4.008 5 N -0.331 5.331 6 C 0.128 3.872 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.297 3.703 16 O -0.399 6.399 17 C -0.216 4.216 18 C 0.140 3.860 19 C -0.206 4.206 20 O -0.343 6.343 21 C -0.202 4.202 22 C -0.218 4.218 23 C -0.205 4.205 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.212 0.788 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.781 15.026 5.963 17.941 hybrid contribution -0.616 -1.094 0.980 1.592 sum -8.396 13.932 6.943 17.686 Atomic orbital electron populations 1.21759 0.95127 1.01820 1.01291 1.21564 0.95313 0.96483 1.00295 1.21965 1.01571 0.96059 1.00872 1.21504 0.82090 1.00866 0.96369 1.48187 1.05035 1.28432 1.51453 1.19207 0.94347 0.82718 0.90893 1.21436 1.40789 0.97327 0.96710 0.92618 1.24922 0.95305 0.98713 0.95126 1.69929 1.42103 1.27925 1.13464 0.86527 0.77626 0.82412 0.81022 1.20730 1.21126 1.19932 1.20038 0.87305 0.82207 0.80728 1.90608 1.14171 1.72477 1.62606 1.22666 0.99799 0.98678 1.00475 1.20318 0.89276 0.86960 0.89450 1.21997 0.99444 1.01194 0.97970 1.86719 1.38046 1.61625 1.47887 1.23160 1.01190 1.02089 0.93770 1.22965 1.03113 1.01918 0.93760 1.22853 0.98556 0.95148 1.03945 0.92964 0.92873 0.92461 0.90430 0.92401 0.92995 0.92914 0.90449 0.91698 0.95312 0.93890 0.92795 0.89718 0.88296 0.92800 0.88146 0.92488 0.78778 0.87592 0.89102 0.88219 0.88381 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.12 -1.61 3.11 -90.62 -0.28 -1.89 16 3 C -0.15 -1.84 7.59 37.16 0.28 -1.56 16 4 C 0.12 1.86 4.89 -4.04 -0.02 1.84 16 5 N -0.60 -12.42 2.26 -175.05 -0.39 -12.82 16 6 C 0.25 6.47 5.22 -5.20 -0.03 6.44 16 7 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 11 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.51 10.36 6.04 -10.98 -0.07 10.29 16 16 O -0.52 -12.89 12.46 -11.54 -0.14 -13.03 16 17 C -0.18 -2.58 3.26 -27.88 -0.09 -2.67 16 18 C 0.18 2.60 0.79 -90.62 -0.07 2.53 16 19 C -0.15 -2.29 8.36 37.16 0.31 -1.98 16 20 O -0.54 -8.92 11.13 -52.32 -0.58 -9.50 16 21 C -0.18 -2.03 5.15 -90.62 -0.47 -2.50 16 22 C -0.18 -1.79 9.74 -26.73 -0.26 -2.05 16 23 C -0.17 -1.75 9.67 -26.74 -0.26 -2.00 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 28 H 0.06 0.85 6.88 -51.93 -0.36 0.50 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.56 6.45 -51.93 -0.34 0.23 16 31 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 32 H 0.06 0.87 6.13 -51.93 -0.32 0.55 16 33 H 0.03 0.76 7.93 -51.92 -0.41 0.35 16 34 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.12 7.44 -51.93 -0.39 0.74 16 37 H 0.10 1.24 4.75 -51.93 -0.25 0.99 16 38 H 0.05 0.78 7.29 -51.93 -0.38 0.40 16 39 H 0.10 1.93 5.37 -51.93 -0.28 1.65 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.37 4.94 7.56 45.56 0.34 5.29 16 42 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.10 1.02 6.38 -51.93 -0.33 0.68 16 45 H 0.10 1.13 7.61 -51.93 -0.40 0.74 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -33.09 356.35 -8.30 -41.39 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.24 Total: 5.94 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.03 Total: -8.31 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.34 Total: -38.91 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.73 Total: -22.53 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.09 -8.30 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755700561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.079 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds