Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53003 * 109.47023 * 119.99324 * 2 1 3 5 5 N 1.46495 * 109.47553 * 174.28567 * 4 2 1 6 6 C 1.46501 * 120.00238 * 276.79335 * 5 4 2 7 7 C 1.50695 * 109.47140 * 269.99919 * 6 5 4 8 8 H 1.08001 * 120.00274 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99827 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00712 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99903 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47328 * 90.00115 * 11 9 7 13 13 H 1.48497 * 109.47358 * 209.99916 * 11 9 7 14 14 H 1.48499 * 109.47097 * 330.00039 * 11 9 7 15 15 C 1.34773 * 120.00218 * 96.79001 * 5 4 2 16 16 O 1.21282 * 120.00411 * 185.20620 * 15 5 4 17 17 C 1.50709 * 119.99673 * 5.20960 * 15 5 4 18 18 C 1.53001 * 109.46878 * 176.12781 * 17 15 5 19 19 C 1.53002 * 109.47254 * 60.00229 * 18 17 15 20 20 O 1.42897 * 109.47204 * 299.99866 * 18 17 15 21 21 C 1.53003 * 109.47012 * 179.97438 * 18 17 15 22 22 C 1.52995 * 117.51651 * 111.28349 * 21 18 17 23 23 C 1.52994 * 117.49877 * 179.91359 * 21 18 17 24 24 H 1.08996 * 109.47704 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46786 * 60.00293 * 1 2 3 26 26 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47704 * 239.99474 * 2 1 3 28 28 H 1.08997 * 109.47257 * 184.63134 * 3 2 1 29 29 H 1.09001 * 109.47112 * 304.62863 * 3 2 1 30 30 H 1.09007 * 109.47238 * 64.62852 * 3 2 1 31 31 H 1.09007 * 109.46730 * 54.28568 * 4 2 1 32 32 H 1.09005 * 109.47512 * 294.29127 * 4 2 1 33 33 H 1.09008 * 109.46709 * 29.99679 * 6 5 4 34 34 H 1.09001 * 109.47297 * 149.99291 * 6 5 4 35 35 H 0.96996 * 120.00849 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47352 * 56.13126 * 17 15 5 37 37 H 1.08996 * 109.46784 * 296.12710 * 17 15 5 38 38 H 1.08996 * 109.47422 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.46816 * 299.99898 * 19 18 17 40 40 H 1.08996 * 109.47470 * 59.99421 * 19 18 17 41 41 H 0.96697 * 113.99901 * 300.00273 * 20 18 17 42 42 H 1.08998 * 115.55105 * 325.58622 * 21 18 17 43 43 H 1.09002 * 117.50022 * 214.97423 * 22 21 18 44 44 H 1.09007 * 117.50132 * 359.97438 * 22 21 18 45 45 H 1.08993 * 117.50216 * 359.97438 * 23 21 18 46 46 H 1.08999 * 117.49978 * 144.97807 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.4984 -0.8414 1.1827 6 6 4.1093 -1.9375 0.4266 7 6 4.3050 -3.1252 1.3331 8 1 4.0049 -3.0692 2.3691 9 6 4.8673 -4.2835 0.8400 10 7 5.2324 -4.3521 -0.4216 11 14 5.1106 -5.7556 1.9640 12 1 3.9023 -6.6178 1.9192 13 1 6.2913 -6.5343 1.5113 14 1 5.3317 -5.2852 3.3550 15 6 4.2784 0.0562 1.8170 16 8 5.4832 0.0132 1.6850 17 6 3.6533 1.1135 2.6903 18 6 4.7543 1.9356 3.3631 19 6 5.6184 2.6043 2.2920 20 8 5.5683 1.0765 4.1639 21 6 4.1198 3.0094 4.2493 22 6 4.2782 2.8605 5.7637 23 6 5.0616 3.9406 5.0151 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1268 1.4436 -0.0830 29 1 1.6106 1.9797 -0.8456 30 1 1.7460 1.9319 0.9286 31 1 1.5954 -1.7150 1.3020 32 1 1.7625 -0.1516 2.1364 33 1 3.4567 -2.2158 -0.4011 34 1 5.0745 -1.6156 0.0358 35 1 5.6283 -5.1669 -0.7684 36 1 3.0377 0.6373 3.4534 37 1 3.0324 1.7688 2.0794 38 1 6.4031 3.1896 2.7713 39 1 6.0705 1.8395 1.6604 40 1 4.9975 3.2596 1.6812 41 1 5.0853 0.6184 4.8652 42 1 3.1851 3.4316 3.8801 43 1 3.4477 3.1846 6.3909 44 1 4.8342 1.9971 6.1291 45 1 6.1333 3.7880 4.8881 46 1 4.7468 4.9754 5.1495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755700561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -92.463976 kcal Electronic energy + Delta-G solvation = -24140.987700 eV Core-core repulsion = 20837.425384 eV Total energy + Delta-G solvation = -3303.562316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29424 -39.57630 -37.64614 -35.90366 -35.44015 -34.07881 -33.00802 -30.16844 -28.61246 -27.89283 -26.80578 -25.27104 -23.88250 -23.09173 -21.37894 -20.80835 -19.78634 -18.57699 -18.19287 -17.58818 -17.09900 -16.66486 -16.54287 -15.77895 -15.57914 -15.33877 -14.97890 -14.49556 -14.38164 -14.32844 -13.80872 -13.59663 -13.30150 -13.24596 -13.11500 -12.85898 -12.83265 -12.69175 -12.54239 -12.42513 -12.26964 -12.18206 -12.01026 -11.88710 -11.80519 -11.60852 -11.47212 -11.31234 -10.98447 -10.74534 -10.63453 -10.21533 -9.28622 -8.21291 -6.36615 1.34770 1.38354 1.48437 1.97273 2.32619 2.47848 2.90716 3.07497 3.37391 3.66856 3.73605 3.93603 4.02036 4.06710 4.08599 4.23681 4.28645 4.38244 4.44974 4.54438 4.56903 4.74171 4.81924 4.84451 4.85996 4.93919 4.95592 5.02131 5.05102 5.07610 5.09336 5.17237 5.25737 5.30709 5.31985 5.34806 5.42439 5.51799 5.53361 5.62742 5.92955 6.09174 6.72355 6.91027 6.92426 7.30698 7.65038 8.85274 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.005767 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.215279 B = 4853.820155 C = 6116.225099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.266 3.734 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.501 3.499 16 O -0.576 6.576 17 C -0.160 4.160 18 C 0.178 3.822 19 C -0.149 4.149 20 O -0.567 6.567 21 C -0.181 4.181 22 C -0.172 4.172 23 C -0.171 4.171 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.014 0.986 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.375 0.625 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 16.454 8.870 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.012 4.012 5 N -0.336 5.336 6 C 0.145 3.855 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.291 3.709 16 O -0.456 6.456 17 C -0.200 4.200 18 C 0.137 3.863 19 C -0.206 4.206 20 O -0.374 6.374 21 C -0.200 4.200 22 C -0.209 4.209 23 C -0.208 4.208 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.032 0.968 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.224 0.776 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.706 16.521 8.254 21.347 hybrid contribution 0.329 -1.526 0.210 1.575 sum -10.378 14.996 8.465 20.105 Atomic orbital electron populations 1.21706 0.92173 1.02168 1.03176 1.21510 0.97630 0.96747 0.97510 1.21937 0.99559 0.95351 1.03216 1.21822 0.78839 1.01287 0.99208 1.48176 1.07297 1.27205 1.50874 1.18573 0.92033 0.84030 0.90907 1.21714 1.41009 0.98324 0.96738 0.92874 1.25871 0.94766 1.01920 0.96679 1.70061 1.42706 1.28919 1.15328 0.85420 0.78183 0.78600 0.78627 1.18716 1.20793 1.19710 1.21098 0.86768 0.82668 0.80387 1.90604 1.16812 1.73951 1.64275 1.22655 1.00098 0.97139 1.00075 1.20406 0.88787 0.87556 0.89582 1.21950 1.00191 1.00286 0.98163 1.86698 1.39618 1.62477 1.48616 1.22999 1.01957 1.01173 0.93840 1.23051 1.03397 1.01328 0.93103 1.22894 0.97511 0.96429 1.03981 0.90413 0.91616 0.92969 0.93997 0.95481 0.91290 0.89964 0.91785 0.87835 0.96797 0.98967 0.92517 0.87175 0.85419 0.92637 0.92687 0.90155 0.77595 0.85002 0.86782 0.89007 0.90377 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.19 71.98 0.66 -1.88 16 2 C -0.11 -3.02 3.11 -10.79 -0.03 -3.06 16 3 C -0.14 -3.26 7.59 71.98 0.55 -2.71 16 4 C 0.11 3.44 4.89 86.38 0.42 3.86 16 5 N -0.60 -25.82 2.26 -826.13 -1.86 -27.68 16 6 C 0.27 14.82 5.22 85.63 0.45 15.26 16 7 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 11 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 15 C 0.50 20.78 6.04 87.66 0.53 21.31 16 16 O -0.58 -30.23 12.46 13.31 0.17 -30.07 16 17 C -0.16 -4.34 3.26 29.85 0.10 -4.24 16 18 C 0.18 4.84 0.79 -10.79 -0.01 4.83 16 19 C -0.15 -4.60 8.36 71.98 0.60 -4.00 16 20 O -0.57 -18.79 11.13 -132.64 -1.48 -20.26 16 21 C -0.18 -3.36 5.15 -10.80 -0.06 -3.42 16 22 C -0.17 -2.82 9.74 30.59 0.30 -2.52 16 23 C -0.17 -3.08 9.67 30.59 0.30 -2.79 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 28 H 0.03 0.77 6.88 -2.39 -0.02 0.76 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.37 6.45 -2.38 -0.02 1.35 16 31 H 0.06 2.15 8.12 -2.38 -0.02 2.13 16 32 H 0.10 2.39 6.13 -2.38 -0.01 2.38 16 33 H 0.01 0.80 7.93 -2.38 -0.02 0.78 16 34 H -0.01 -0.51 7.36 -2.39 -0.02 -0.52 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.11 2.47 7.44 -2.39 -0.02 2.46 16 37 H 0.13 2.70 4.75 -2.39 -0.01 2.69 16 38 H 0.05 1.63 7.29 -2.39 -0.02 1.61 16 39 H 0.05 2.24 5.37 -2.39 -0.01 2.23 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.38 9.92 7.56 -74.06 -0.56 9.35 16 42 H 0.13 1.82 8.11 -2.39 -0.02 1.80 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.66 6.38 -2.38 -0.02 1.65 16 45 H 0.08 1.73 7.61 -2.39 -0.02 1.71 16 46 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.21 356.35 4.04 -74.17 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.40 Total: 23.52 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.50 Total: -10.07 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.58 Total: -85.22 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -1.31 Total: -50.33 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.21 4.04 -74.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755700561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.296 kcal (2) G-P(sol) polarization free energy of solvation -78.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds