Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47192 * 2 1 4 4 C 1.53001 * 109.46947 * 120.00068 * 2 1 3 5 5 N 1.46495 * 109.47105 * 170.43013 * 4 2 1 6 6 C 1.46505 * 120.00372 * 278.57599 * 5 4 2 7 7 C 1.50691 * 109.47145 * 270.00037 * 6 5 4 8 8 H 1.08005 * 120.00515 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99883 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99682 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99789 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47191 * 90.00725 * 11 9 7 13 13 H 1.48510 * 109.47149 * 210.00388 * 11 9 7 14 14 H 1.48500 * 109.47657 * 330.00409 * 11 9 7 15 15 C 1.34781 * 120.00070 * 98.57615 * 5 4 2 16 16 O 1.21287 * 120.00142 * 184.37429 * 15 5 4 17 17 C 1.50699 * 119.99826 * 4.37881 * 15 5 4 18 18 C 1.53000 * 109.47166 * 173.92661 * 17 15 5 19 19 C 1.53001 * 109.46883 * 298.97135 * 18 17 15 20 20 O 1.42902 * 109.47799 * 58.96973 * 18 17 15 21 21 C 1.53004 * 109.47305 * 178.97643 * 18 17 15 22 22 C 1.53001 * 117.49377 * 248.61816 * 21 18 17 23 23 C 1.52993 * 117.49719 * 179.97438 * 21 18 17 24 24 H 1.09003 * 109.47094 * 300.00076 * 1 2 3 25 25 H 1.08994 * 109.47141 * 59.99927 * 1 2 3 26 26 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47372 * 239.99490 * 2 1 3 28 28 H 1.09001 * 109.47257 * 303.11861 * 3 2 1 29 29 H 1.09004 * 109.47223 * 63.11786 * 3 2 1 30 30 H 1.08995 * 109.47536 * 183.11109 * 3 2 1 31 31 H 1.08996 * 109.47486 * 50.43022 * 4 2 1 32 32 H 1.09005 * 109.47186 * 290.43035 * 4 2 1 33 33 H 1.09004 * 109.46582 * 30.00319 * 6 5 4 34 34 H 1.09000 * 109.46873 * 149.99734 * 6 5 4 35 35 H 0.97005 * 119.99596 * 179.97438 * 10 9 7 36 36 H 1.09009 * 109.46914 * 293.92019 * 17 15 5 37 37 H 1.08998 * 109.47454 * 53.92131 * 17 15 5 38 38 H 1.09004 * 109.47261 * 65.24384 * 19 18 17 39 39 H 1.09001 * 109.47470 * 185.24360 * 19 18 17 40 40 H 1.08995 * 109.47165 * 305.24337 * 19 18 17 41 41 H 0.96701 * 113.99529 * 59.99970 * 20 18 17 42 42 H 1.08994 * 115.54823 * 34.32186 * 21 18 17 43 43 H 1.08996 * 117.50346 * 359.97438 * 22 21 18 44 44 H 1.09007 * 117.49542 * 145.02127 * 22 21 18 45 45 H 1.09004 * 117.49522 * 214.97501 * 23 21 18 46 46 H 1.09000 * 117.50197 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4868 -0.9234 1.1400 6 6 4.0129 -2.0451 0.3582 7 6 4.1662 -3.2505 1.2495 8 1 3.8989 -3.1873 2.2941 9 6 4.6476 -4.4341 0.7316 10 7 4.9736 -4.5109 -0.5402 11 14 4.8383 -5.9281 1.8367 12 1 3.5822 -6.7200 1.8195 13 1 5.9597 -6.7681 1.3444 14 1 5.1246 -5.4840 3.2245 15 6 4.3341 -0.0773 1.7588 16 8 5.5311 -0.1967 1.6041 17 6 3.7940 1.0171 2.6430 18 6 4.9553 1.7319 3.3368 19 6 5.7215 0.7337 4.2072 20 8 5.8350 2.2785 2.3522 21 6 4.4088 2.8595 4.2148 22 6 4.7059 4.2972 3.7842 23 6 5.4203 3.6985 4.9980 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6318 1.9722 -0.8607 29 1 1.7231 1.9399 0.9166 30 1 3.1286 1.4430 -0.0558 31 1 1.5439 -1.6877 1.3388 32 1 1.8229 -0.1183 2.1310 33 1 3.3227 -2.2781 -0.4526 34 1 4.9836 -1.7747 -0.0574 35 1 5.3126 -5.3436 -0.9045 36 1 3.2373 1.7321 2.0372 37 1 3.1329 0.5846 3.3939 38 1 6.1892 -0.0184 3.5717 39 1 6.4903 1.2601 4.7729 40 1 5.0312 0.2483 4.8969 41 1 5.4155 2.9208 1.7633 42 1 3.4455 2.6637 4.6858 43 1 5.2911 4.4398 2.8758 44 1 3.9380 5.0477 3.9719 45 1 5.1222 4.0552 5.9839 46 1 6.4752 3.4469 4.8882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755700566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -74.519700 kcal Electronic energy + Delta-G solvation = -24125.992429 eV Core-core repulsion = 20823.208235 eV Total energy + Delta-G solvation = -3302.784194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89518 -38.33702 -36.24341 -34.85731 -33.59417 -32.26045 -31.73729 -28.54134 -27.13337 -26.76172 -25.35500 -23.79603 -22.38288 -22.24825 -20.16868 -19.74058 -18.25620 -16.98945 -16.40871 -16.13448 -15.93953 -15.10083 -14.95281 -14.47060 -14.26465 -13.89907 -13.82577 -13.24650 -13.02700 -12.67584 -12.39586 -12.26784 -12.18672 -11.91389 -11.71307 -11.64950 -11.37641 -11.29617 -11.19916 -10.89584 -10.84986 -10.80185 -10.70953 -10.52563 -10.50059 -10.40010 -10.08183 -9.99347 -9.67720 -9.55189 -8.61997 -8.40012 -7.51995 -6.00660 -4.05201 3.31397 3.38267 3.41894 3.56230 3.68079 3.96363 4.43265 4.50115 4.66856 4.83529 4.88546 5.02629 5.06849 5.14660 5.26816 5.31305 5.33087 5.39119 5.53038 5.56603 5.65499 5.71386 5.77965 5.79781 5.88075 5.91534 5.97407 6.01184 6.07304 6.08915 6.19432 6.25817 6.27659 6.31773 6.46646 6.58400 6.80101 7.15154 7.52745 7.64698 7.95014 7.96953 8.29019 8.54350 8.95822 9.24796 9.60186 11.07194 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.005644 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.136094 B = 4959.517439 C = 6246.254114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.520 6.520 17 C -0.174 4.174 18 C 0.182 3.818 19 C -0.144 4.144 20 O -0.534 6.534 21 C -0.183 4.183 22 C -0.180 4.180 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.362 0.638 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 15.747 6.611 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.203 4.203 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.128 3.872 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.396 6.396 17 C -0.214 4.214 18 C 0.140 3.860 19 C -0.201 4.201 20 O -0.339 6.339 21 C -0.202 4.202 22 C -0.217 4.217 23 C -0.205 4.205 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.209 0.791 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.741 15.128 6.680 17.859 hybrid contribution -0.625 -0.561 0.331 0.903 sum -7.366 14.568 7.011 17.766 Atomic orbital electron populations 1.21763 0.95141 1.01840 1.01251 1.21564 0.95334 0.96434 1.00332 1.21927 1.01416 0.96081 1.00892 1.21512 0.82542 1.00488 0.96311 1.48202 1.04815 1.28975 1.51204 1.19198 0.95447 0.82011 0.90498 1.21443 1.43429 0.95356 0.96102 0.92602 1.24925 0.95250 0.98809 0.95085 1.69935 1.44137 1.26871 1.12426 0.86535 0.77654 0.82551 0.80893 1.20712 1.21120 1.19931 1.20060 0.86944 0.82463 0.81097 1.90680 1.14890 1.72053 1.62003 1.22634 0.99699 0.98807 1.00274 1.20308 0.88437 0.90295 0.86954 1.21868 1.00119 0.99167 0.98933 1.86744 1.38764 1.61657 1.46712 1.23155 1.00534 0.92556 1.03919 1.22968 1.03614 0.95336 0.99798 1.22869 0.98557 1.03572 0.95532 0.92980 0.92904 0.92437 0.90399 0.93038 0.93011 0.92506 0.90524 0.91644 0.95329 0.93894 0.92794 0.88963 0.89230 0.88991 0.92689 0.92169 0.79113 0.87543 0.88253 0.89118 0.89210 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 2 C -0.12 -1.62 3.07 -90.62 -0.28 -1.90 16 3 C -0.15 -1.79 7.62 37.16 0.28 -1.51 16 4 C 0.12 1.86 4.88 -4.04 -0.02 1.84 16 5 N -0.60 -12.46 2.31 -175.06 -0.40 -12.86 16 6 C 0.25 6.48 5.19 -5.20 -0.03 6.45 16 7 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.51 10.32 6.13 -10.98 -0.07 10.25 16 16 O -0.52 -12.90 12.70 -14.43 -0.18 -13.09 16 17 C -0.17 -2.54 3.29 -27.88 -0.09 -2.63 16 18 C 0.18 2.59 0.79 -90.62 -0.07 2.52 16 19 C -0.14 -2.32 8.38 37.16 0.31 -2.00 16 20 O -0.53 -8.41 10.82 -55.22 -0.60 -9.01 16 21 C -0.18 -2.01 5.15 -90.62 -0.47 -2.47 16 22 C -0.18 -1.71 9.74 -26.71 -0.26 -1.97 16 23 C -0.17 -1.73 9.61 -26.71 -0.26 -1.99 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.27 7.80 -51.93 -0.41 0.86 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.54 7.00 -51.93 -0.36 0.18 16 30 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 31 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.07 0.88 5.99 -51.93 -0.31 0.56 16 33 H 0.03 0.76 7.74 -51.93 -0.40 0.36 16 34 H 0.04 1.28 7.37 -51.93 -0.38 0.90 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.14 5.06 -51.92 -0.26 0.88 16 37 H 0.09 1.19 7.30 -51.93 -0.38 0.81 16 38 H 0.09 1.87 5.96 -51.93 -0.31 1.56 16 39 H 0.05 0.81 7.12 -51.93 -0.37 0.44 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.36 4.46 7.57 45.56 0.34 4.80 16 42 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 43 H 0.10 0.94 6.38 -51.93 -0.33 0.61 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -33.03 356.76 -8.38 -41.41 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.26 Total: 5.44 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.02 Total: -8.18 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.33 Total: -38.92 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.78 Total: -22.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.03 -8.38 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755700566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.110 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds