Wall clock time and date at job start Tue Mar 31 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 H 1.09007 * 110.41492 * 307.30478 * 3 2 1 5 5 C 1.54484 * 110.37370 * 184.99974 * 3 2 1 6 6 C 1.54506 * 104.18183 * 217.25567 * 5 3 2 7 7 C 1.54474 * 104.06610 * 359.93052 * 6 5 3 8 8 H 1.09003 * 110.37074 * 265.14621 * 7 6 5 9 9 C 1.50698 * 110.37690 * 142.81045 * 7 6 5 10 10 O 1.21280 * 120.00031 * 251.08534 * 9 7 6 11 11 N 1.34783 * 120.00017 * 71.07605 * 9 7 6 12 12 C 1.46498 * 120.00087 * 185.25728 * 11 9 7 13 13 C 1.50702 * 109.46838 * 90.00065 * 12 11 9 14 14 H 1.08003 * 120.00281 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99847 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99945 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47385 * 120.00132 * 17 15 13 20 20 H 1.48498 * 109.47327 * 240.00598 * 17 15 13 21 21 C 1.46499 * 119.99945 * 5.25993 * 11 9 7 22 22 C 1.52999 * 109.47292 * 84.38835 * 21 11 9 23 23 C 1.53002 * 109.47024 * 64.99762 * 22 21 11 24 24 C 1.52999 * 109.47569 * 185.00203 * 22 21 11 25 25 O 1.44423 * 104.80528 * 23.97896 * 7 6 5 26 26 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47508 * 300.00418 * 1 2 3 28 28 H 1.09001 * 109.46915 * 60.00187 * 1 2 3 29 29 H 1.08994 * 109.47191 * 239.99541 * 2 1 3 30 30 H 1.09002 * 109.47232 * 119.99373 * 2 1 3 31 31 H 1.08993 * 110.51063 * 98.54357 * 5 3 2 32 32 H 1.09000 * 110.50791 * 335.96558 * 5 3 2 33 33 H 1.09003 * 110.51227 * 118.57517 * 6 5 3 34 34 H 1.09002 * 110.50991 * 241.14632 * 6 5 3 35 35 H 1.08993 * 109.46850 * 209.99899 * 12 11 9 36 36 H 1.08994 * 109.46968 * 330.00538 * 12 11 9 37 37 H 0.97002 * 119.99893 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.47321 * 204.39092 * 21 11 9 39 39 H 1.09004 * 109.47029 * 324.39005 * 21 11 9 40 40 H 1.09009 * 109.47051 * 305.00348 * 22 21 11 41 41 H 1.09001 * 109.47300 * 300.00634 * 23 22 21 42 42 H 1.09000 * 109.46586 * 60.00294 * 23 22 21 43 43 H 1.09003 * 109.47107 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46794 * 59.99751 * 24 22 21 45 45 H 1.08993 * 109.47574 * 179.97438 * 24 22 21 46 46 H 1.09000 * 109.47047 * 300.00321 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0074 -0.8126 5 6 3.5794 1.4686 -0.1262 6 6 4.0139 2.6403 0.7824 7 6 2.6857 3.1872 1.3507 8 1 2.3288 4.0208 0.7459 9 6 2.8655 3.6167 2.7840 10 8 2.3648 2.9688 3.6786 11 7 3.5830 4.7209 3.0716 12 6 3.8552 5.0747 4.4669 13 6 5.1440 4.4292 4.9065 14 1 5.7046 3.8171 4.2155 15 6 5.6082 4.6211 6.1906 16 7 4.9258 5.3670 7.0319 17 14 7.2062 3.8217 6.7354 18 1 7.7772 3.0394 5.6097 19 1 8.1708 4.8732 7.1464 20 1 6.9411 2.9172 7.8829 21 6 4.0906 5.5672 1.9889 22 6 3.0009 6.5502 1.5563 23 6 2.6919 7.5085 2.7083 24 6 3.4860 7.3487 0.3447 25 8 1.7651 2.0773 1.2703 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.8749 1.6560 -1.1585 32 1 4.0076 0.5312 0.2285 33 1 4.6550 2.2818 1.5877 34 1 4.5263 3.4058 0.1997 35 1 3.9419 6.1574 4.5568 36 1 3.0388 4.7219 5.0971 37 1 5.2522 5.5016 7.9354 38 1 4.9616 6.1212 2.3387 39 1 4.3736 4.9425 1.1417 40 1 2.0989 5.9988 1.2905 41 1 2.3463 6.9396 3.5714 42 1 3.5939 8.0598 2.9740 43 1 1.9153 8.2085 2.4002 44 1 3.7061 6.6659 -0.4759 45 1 2.7096 8.0486 0.0362 46 1 4.3880 7.9000 0.6104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756924217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:48 Heat of formation + Delta-G solvation = -103.049523 kcal Electronic energy + Delta-G solvation = -23978.500839 eV Core-core repulsion = 20674.479499 eV Total energy + Delta-G solvation = -3304.021340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08844 -38.30245 -36.26823 -33.69363 -33.47348 -32.43922 -31.82694 -29.05990 -27.24793 -26.86794 -25.55349 -24.29172 -22.46330 -21.63236 -20.94981 -20.17224 -18.51454 -16.68697 -16.47756 -16.26144 -16.13490 -15.00364 -14.57605 -14.54528 -14.32407 -13.88448 -13.62704 -13.48045 -13.31058 -13.14361 -12.77505 -12.47047 -12.10222 -12.07718 -11.73006 -11.66846 -11.54526 -11.45196 -11.27712 -11.01596 -10.97893 -10.88345 -10.74041 -10.71552 -10.57905 -10.43840 -10.28035 -10.09500 -9.69943 -9.56661 -8.74168 -8.41914 -7.60803 -6.03168 -4.07775 3.29860 3.35410 3.38257 3.40700 3.55793 4.26800 4.45264 4.56244 4.68837 4.87139 5.03997 5.06104 5.09707 5.14695 5.21906 5.27119 5.29682 5.32195 5.42185 5.55675 5.62277 5.68768 5.78061 5.80086 5.81942 5.87770 5.89389 5.99877 6.08720 6.13770 6.14128 6.16122 6.18557 6.29288 6.29757 6.54415 6.67941 6.88712 7.15573 7.47867 7.58690 7.93964 8.25418 8.43426 8.91884 9.12609 9.57325 11.04741 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.005598 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.429370 B = 5000.754103 C = 6157.537551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.067 0.933 5 C -0.149 4.149 6 C -0.143 4.143 7 C 0.058 3.942 8 H 0.084 0.916 9 C 0.513 3.487 10 O -0.523 6.523 11 N -0.592 5.592 12 C 0.245 3.755 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.110 3.890 22 C -0.117 4.117 23 C -0.146 4.146 24 C -0.143 4.143 25 O -0.340 6.340 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -1.629 -18.388 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.085 0.915 5 C -0.187 4.187 6 C -0.181 4.181 7 C -0.003 4.003 8 H 0.102 0.898 9 C 0.298 3.702 10 O -0.398 6.398 11 N -0.325 5.325 12 C 0.127 3.873 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.014 4.014 22 C -0.136 4.136 23 C -0.203 4.203 24 C -0.201 4.201 25 O -0.258 6.258 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.820 -1.977 -17.522 18.042 hybrid contribution 1.135 -0.228 0.189 1.173 sum -2.686 -2.205 -17.333 17.678 Atomic orbital electron populations 1.21735 0.95335 1.01428 1.02329 1.21565 0.96733 0.94449 1.02645 1.23119 0.94095 0.94477 0.87131 0.91503 1.22992 0.95992 0.99567 1.00106 1.22908 0.97267 0.98032 0.99920 1.22938 0.90165 0.91098 0.96140 0.89840 1.19877 0.79619 0.81512 0.89201 1.90684 1.47697 1.53408 1.48030 1.48105 1.51845 1.23371 1.09150 1.19361 0.96926 0.96166 0.74880 1.21491 1.06777 1.30827 0.97429 0.92489 1.24922 0.97515 0.95263 0.96343 1.69943 1.38676 1.38655 1.05994 0.86471 0.83223 0.79169 0.78719 1.19853 1.20988 1.20890 1.21671 0.96630 0.92808 0.90336 1.21635 0.99046 0.97138 0.95827 1.21856 1.01185 0.98719 0.98552 1.21776 1.01313 0.99825 0.97166 1.89308 1.56745 1.43135 1.36628 0.92876 0.91734 0.93056 0.90912 0.90823 0.90559 0.90408 0.89753 0.89842 0.94364 0.93928 0.92794 0.89641 0.91658 0.91648 0.91522 0.92488 0.93549 0.92971 0.92787 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.85 37.16 0.37 -1.24 16 2 C -0.12 -1.29 5.56 -26.73 -0.15 -1.43 16 3 C 0.07 0.87 3.26 -25.95 -0.08 0.79 16 4 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 5 C -0.15 -1.69 6.62 -25.16 -0.17 -1.85 16 6 C -0.14 -1.98 5.76 -25.17 -0.15 -2.13 16 7 C 0.06 0.97 2.78 -27.11 -0.08 0.89 16 8 H 0.08 1.19 6.49 -51.93 -0.34 0.85 16 9 C 0.51 11.25 6.88 -10.98 -0.08 11.17 16 10 O -0.52 -14.19 16.12 -13.57 -0.22 -14.40 16 11 N -0.59 -12.49 2.19 -175.07 -0.38 -12.87 16 12 C 0.25 6.37 4.28 -5.19 -0.02 6.35 16 13 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 14 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.11 1.75 4.50 -4.04 -0.02 1.74 16 22 C -0.12 -1.60 2.93 -90.62 -0.27 -1.86 16 23 C -0.15 -2.19 8.33 37.16 0.31 -1.88 16 24 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 25 O -0.34 -5.97 10.42 -54.36 -0.57 -6.54 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.83 8.02 -51.92 -0.42 0.41 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 33 H 0.08 1.38 7.86 -51.93 -0.41 0.97 16 34 H 0.08 0.93 6.70 -51.93 -0.35 0.58 16 35 H 0.04 0.99 6.62 -51.93 -0.34 0.65 16 36 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 39 H 0.07 0.88 4.82 -51.93 -0.25 0.63 16 40 H 0.07 0.91 7.01 -51.92 -0.36 0.55 16 41 H 0.07 1.21 6.33 -51.93 -0.33 0.88 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -33.53 360.46 -8.63 -42.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.20 Total: -0.68 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.41 Total: -4.13 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.35 Total: -38.68 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.79 Total: -20.94 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.53 -8.63 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756924217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.897 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds