Wall clock time and date at job start Tue Mar 31 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47540 * 2 1 4 4 H 1.09005 * 109.47246 * 55.00030 * 3 2 1 5 5 C 1.52998 * 109.47204 * 295.00363 * 3 2 1 6 6 C 1.53002 * 109.47375 * 175.00010 * 3 2 1 7 7 C 1.52998 * 109.47191 * 184.99890 * 6 3 2 8 8 C 1.53002 * 109.47191 * 179.97438 * 7 6 3 9 9 H 1.09001 * 109.46793 * 55.00427 * 8 7 6 10 10 O 1.42893 * 109.47278 * 295.00244 * 8 7 6 11 11 C 1.53000 * 109.47137 * 175.00029 * 8 7 6 12 12 C 1.50697 * 109.47238 * 185.00189 * 11 8 7 13 13 O 1.21290 * 119.99887 * 0.02562 * 12 11 8 14 14 N 1.34775 * 120.00016 * 180.02562 * 12 11 8 15 15 C 1.37099 * 119.99657 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00058 * 224.28647 * 15 14 12 17 17 C 1.38952 * 120.00387 * 44.28911 * 15 14 12 18 18 N 1.31416 * 119.99649 * 18.20329 * 17 15 14 19 19 Si 1.86795 * 120.00344 * 198.20541 * 17 15 14 20 20 H 1.48504 * 109.46960 * 89.99699 * 19 17 15 21 21 H 1.48495 * 109.47154 * 209.99862 * 19 17 15 22 22 H 1.48506 * 109.47144 * 330.00038 * 19 17 15 23 23 C 1.46497 * 120.00096 * 359.97438 * 14 12 11 24 24 C 1.53003 * 117.49888 * 183.22646 * 23 14 12 25 25 C 1.52995 * 117.49931 * 114.60407 * 23 14 12 26 26 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46728 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47056 * 59.99541 * 1 2 3 29 29 H 1.08997 * 109.47046 * 239.99954 * 2 1 3 30 30 H 1.09004 * 109.47056 * 120.00458 * 2 1 3 31 31 H 1.09001 * 109.47119 * 59.99585 * 5 3 2 32 32 H 1.09005 * 109.47441 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47216 * 299.99837 * 5 3 2 34 34 H 1.09001 * 109.46941 * 65.00216 * 6 3 2 35 35 H 1.08997 * 109.47289 * 305.00200 * 6 3 2 36 36 H 1.09004 * 109.47260 * 59.99927 * 7 6 3 37 37 H 1.09005 * 109.47519 * 300.00554 * 7 6 3 38 38 H 0.96711 * 113.99991 * 299.99977 * 10 8 7 39 39 H 1.09005 * 109.47121 * 65.00351 * 11 8 7 40 40 H 1.09004 * 109.47519 * 305.00260 * 11 8 7 41 41 H 0.96994 * 119.99554 * 174.93714 * 18 17 15 42 42 H 1.08994 * 115.55059 * 328.92984 * 23 14 12 43 43 H 1.09005 * 117.49629 * 359.97438 * 24 23 14 44 44 H 1.08995 * 117.49856 * 145.01526 * 24 23 14 45 45 H 1.09007 * 117.50115 * 214.97573 * 25 23 14 46 46 H 1.09002 * 117.49844 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 4.0646 2.8848 0.2511 8 6 5.5894 2.8866 0.3774 9 1 6.0243 2.3474 -0.4642 10 8 5.9669 2.2478 1.5987 11 6 6.0995 4.3290 0.3774 12 6 7.6065 4.3289 0.3780 13 8 8.2129 3.2785 0.3779 14 7 8.2804 5.4961 0.3786 15 6 9.6514 5.4959 0.3797 16 1 10.1910 6.1654 1.0332 17 6 10.3468 4.6346 -0.4601 18 7 9.7398 4.0887 -1.4899 19 14 12.1443 4.2525 -0.1252 20 1 12.2411 3.0659 0.7625 21 1 12.8374 3.9691 -1.4076 22 1 12.7835 5.4186 0.5358 23 6 7.5480 6.7648 0.3781 24 6 8.3684 8.0541 0.3025 25 6 7.6832 7.6591 1.6122 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3968 32 1 1.9983 3.1543 -1.3071 33 1 2.0698 1.5875 -2.1492 34 1 4.0030 0.9834 -0.7597 35 1 3.8571 0.8799 1.0113 36 1 3.6265 3.3456 1.1365 37 1 3.7723 3.4492 -0.6345 38 1 5.6144 2.6752 2.3914 39 1 5.7359 4.8430 1.2672 40 1 5.7366 4.8428 -0.5128 41 1 10.2425 3.5464 -2.1176 42 1 6.5839 6.7509 -0.1301 43 1 9.4531 7.9583 0.2535 44 1 7.9441 8.8886 -0.2558 45 1 6.8081 8.2338 1.9157 46 1 8.3168 7.3031 2.4246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793187613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:17 Heat of formation + Delta-G solvation = -79.636825 kcal Electronic energy + Delta-G solvation = -23141.007888 eV Core-core repulsion = 19838.001799 eV Total energy + Delta-G solvation = -3303.006089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.83795 -37.80569 -36.54997 -35.60014 -32.71844 -32.30493 -30.99201 -30.04705 -28.27382 -25.88567 -24.62725 -22.66609 -21.67348 -21.08931 -20.86000 -19.93943 -19.04721 -16.46041 -16.02118 -15.80632 -15.45216 -15.18297 -14.93757 -14.58184 -14.06586 -13.82447 -13.69244 -13.55643 -13.13733 -12.77727 -12.65923 -12.26605 -12.08448 -11.91906 -11.69747 -11.60455 -11.27939 -11.02275 -10.89103 -10.85998 -10.80002 -10.65526 -10.52178 -10.41423 -10.37699 -10.18417 -10.08935 -9.93567 -9.69515 -9.35962 -8.62250 -7.86060 -6.92732 -6.04089 -3.78910 3.34932 3.41712 3.45975 4.22464 4.31886 4.55397 4.78250 4.81775 4.84112 4.90308 5.01722 5.18388 5.27136 5.29451 5.39088 5.40556 5.48462 5.53152 5.61632 5.71199 5.75132 5.78913 5.81872 5.84567 5.86476 5.91089 5.95133 6.03076 6.08708 6.12253 6.20921 6.23165 6.24428 6.32561 6.41075 6.49153 6.54673 6.74389 6.79819 6.96176 7.68461 8.24071 8.35494 9.15725 9.27546 9.76367 10.42626 11.05402 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.003802 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.574235 B = 7363.202298 C = 8139.118717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.092 4.092 4 H 0.066 0.934 5 C -0.151 4.151 6 C -0.110 4.110 7 C -0.151 4.151 8 C 0.128 3.872 9 H 0.101 0.899 10 O -0.543 6.543 11 C -0.167 4.167 12 C 0.486 3.514 13 O -0.516 6.516 14 N -0.435 5.435 15 C -0.347 4.347 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.836 5.836 19 Si 0.911 3.089 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.078 3.922 24 C -0.175 4.175 25 C -0.210 4.210 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.359 0.641 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 -0.177 2.310 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.085 0.915 5 C -0.208 4.208 6 C -0.148 4.148 7 C -0.189 4.189 8 C 0.068 3.932 9 H 0.119 0.881 10 O -0.346 6.346 11 C -0.208 4.208 12 C 0.273 3.727 13 O -0.392 6.392 14 N -0.158 5.158 15 C -0.474 4.474 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.470 5.470 19 Si 0.739 3.261 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.028 4.028 24 C -0.213 4.213 25 C -0.249 4.249 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.204 0.796 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.603 -1.353 1.741 15.758 hybrid contribution 0.483 0.512 0.296 0.764 sum -15.120 -0.840 2.038 15.280 Atomic orbital electron populations 1.21826 0.96240 1.01250 1.01728 1.21583 0.95513 0.96734 1.02018 1.21193 0.96012 0.95739 0.98147 0.91542 1.21941 1.00743 1.00769 0.97330 1.21568 0.93841 0.96837 1.02547 1.22400 0.96957 0.97357 1.02159 1.21624 0.91109 0.92047 0.88421 0.88121 1.86725 1.77079 1.55997 1.14832 1.22391 0.97545 0.98385 1.02470 1.19651 0.87374 0.84460 0.81262 1.90566 1.69213 1.30312 1.49076 1.42818 1.04978 1.00919 1.67040 1.18807 0.79914 1.25514 1.23180 0.90799 1.25222 0.98664 0.96066 0.93692 1.69821 1.36508 1.30125 1.10527 0.86232 0.83241 0.78986 0.77645 1.20321 1.21371 1.20014 1.21650 0.96617 0.85140 0.99402 1.23050 1.01091 0.97536 0.99606 1.23310 1.02812 1.05628 0.93131 0.93108 0.92941 0.92603 0.92076 0.92059 0.92949 0.92428 0.92751 0.92015 0.91371 0.92140 0.91171 0.79607 0.90820 0.90304 0.92737 0.88277 0.87539 0.89923 0.89965 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.12 -1.12 5.40 -26.74 -0.14 -1.27 16 3 C -0.09 -0.92 2.39 -90.62 -0.22 -1.14 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.43 8.70 37.16 0.32 -1.11 16 6 C -0.11 -1.34 4.58 -26.73 -0.12 -1.46 16 7 C -0.15 -1.93 4.65 -26.73 -0.12 -2.05 16 8 C 0.13 2.23 2.51 -26.73 -0.07 2.16 16 9 H 0.10 2.08 7.95 -51.93 -0.41 1.67 16 10 O -0.54 -10.08 12.11 -49.64 -0.60 -10.68 16 11 C -0.17 -3.12 4.00 -27.88 -0.11 -3.23 16 12 C 0.49 12.37 6.85 -10.99 -0.08 12.29 16 13 O -0.52 -15.49 13.18 -8.86 -0.12 -15.60 16 14 N -0.44 -11.03 2.83 -107.73 -0.31 -11.34 16 15 C -0.35 -9.67 7.92 -14.93 -0.12 -9.79 16 16 H 0.07 2.01 7.26 -52.48 -0.38 1.63 16 17 C 0.07 2.12 4.39 -17.47 -0.08 2.04 16 18 N -0.84 -25.23 11.74 55.50 0.65 -24.58 16 19 Si 0.91 22.52 29.59 -169.99 -5.03 17.49 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.08 1.58 5.87 -67.93 -0.40 1.18 16 24 C -0.18 -3.20 9.80 -26.73 -0.26 -3.46 16 25 C -0.21 -3.61 10.36 -26.73 -0.28 -3.88 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 32 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.85 6.57 -51.93 -0.34 0.51 16 38 H 0.36 5.14 9.05 45.56 0.41 5.55 16 39 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 40 H 0.08 1.37 7.57 -51.93 -0.39 0.98 16 41 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 42 H 0.10 1.77 6.96 -51.93 -0.36 1.41 16 43 H 0.11 2.17 6.72 -51.93 -0.35 1.82 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 46 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.86 363.43 -8.70 -42.56 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.46 Total: 7.27 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.31 Total: -10.60 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.35 Total: -35.92 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.72 Total: -26.28 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.86 -8.70 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793187613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.076 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds