Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47585 * 2 1 4 4 H 1.09007 * 109.47292 * 175.22204 * 3 2 1 5 5 C 1.50693 * 109.47344 * 55.21873 * 3 2 1 6 6 H 1.07997 * 120.00405 * 245.73011 * 5 3 2 7 7 C 1.37879 * 119.99806 * 65.72257 * 5 3 2 8 8 N 1.31511 * 120.00142 * 5.52007 * 7 5 3 9 9 Si 1.86804 * 120.00145 * 185.51711 * 7 5 3 10 10 H 1.48493 * 109.47351 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47121 * 300.00481 * 9 7 5 12 12 H 1.48499 * 109.46904 * 60.00043 * 9 7 5 13 13 N 1.46901 * 109.47073 * 295.21912 * 3 2 1 14 14 C 1.46896 * 111.00214 * 279.79901 * 13 3 2 15 15 C 1.53005 * 109.47287 * 184.98336 * 14 13 3 16 16 C 1.52992 * 109.45879 * 295.04740 * 15 14 13 17 17 C 1.53017 * 109.46208 * 179.84837 * 16 15 14 18 18 C 1.52961 * 109.43736 * 59.78863 * 17 16 15 19 19 C 1.52959 * 109.81563 * 300.30041 * 18 17 16 20 20 C 1.52987 * 109.46203 * 174.99877 * 15 14 13 21 21 O 1.43708 * 109.40164 * 60.39890 * 18 17 16 22 22 C 1.44792 * 104.79001 * 95.49898 * 21 18 17 23 23 C 1.54922 * 101.72487 * 36.06699 * 22 21 18 24 24 O 1.43289 * 109.65345 * 179.72110 * 18 17 16 25 25 H 1.08993 * 109.47599 * 184.94875 * 1 2 3 26 26 H 1.09003 * 109.47198 * 304.95554 * 1 2 3 27 27 H 1.09005 * 109.46626 * 64.94647 * 1 2 3 28 28 H 1.09004 * 109.46935 * 239.99677 * 2 1 3 29 29 H 1.08999 * 109.47061 * 119.99813 * 2 1 3 30 30 H 0.96996 * 119.99764 * 355.15196 * 8 7 5 31 31 H 1.00895 * 111.00051 * 155.83653 * 13 3 2 32 32 H 1.09003 * 109.46828 * 304.98084 * 14 13 3 33 33 H 1.09000 * 109.47335 * 64.98177 * 14 13 3 34 34 H 1.08993 * 109.46288 * 55.01820 * 15 14 13 35 35 H 1.09002 * 109.47446 * 299.84319 * 16 15 14 36 36 H 1.09001 * 109.47468 * 59.84814 * 16 15 14 37 37 H 1.09004 * 109.47896 * 299.79649 * 17 16 15 38 38 H 1.09002 * 109.47605 * 179.77975 * 17 16 15 39 39 H 1.08996 * 109.47763 * 299.70541 * 19 18 17 40 40 H 1.08996 * 109.48645 * 179.68128 * 19 18 17 41 41 H 1.08998 * 109.47192 * 300.14700 * 20 15 14 42 42 H 1.08999 * 109.47738 * 60.14978 * 20 15 14 43 43 H 1.09004 * 110.97955 * 277.96093 * 22 21 18 44 44 H 1.08998 * 111.01055 * 154.19078 * 22 21 18 45 45 H 1.09005 * 110.69439 * 206.07720 * 23 22 21 46 46 H 1.08994 * 110.69393 * 82.87578 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1268 1.4436 0.0856 5 6 1.4435 2.1863 1.1669 6 1 0.7592 3.0036 0.9935 7 6 1.7711 1.8232 2.4560 8 7 2.6852 0.9017 2.6675 9 14 0.9166 2.6403 3.9023 10 1 1.4444 2.0780 5.1713 11 1 1.1711 4.1029 3.8658 12 1 -0.5449 2.3900 3.8195 13 7 1.6470 2.1008 -1.2530 14 6 2.5541 1.7328 -2.3482 15 6 2.1900 2.5306 -3.6020 16 6 0.7938 2.1239 -4.0773 17 6 0.4280 2.9245 -5.3290 18 6 1.4500 2.6409 -6.4312 19 6 2.8481 3.0414 -5.9576 20 6 3.2100 2.2407 -4.7047 21 8 1.4357 1.2388 -6.7462 22 6 0.5488 1.1248 -7.8850 23 6 0.8632 2.4285 -8.6606 24 8 1.1081 3.3835 -7.6080 25 1 -0.3634 -1.0237 0.0886 26 1 -0.3634 0.5888 0.8423 27 1 -0.3633 0.4352 -0.9310 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0783 0.4276 1.9182 31 1 1.6066 3.1024 -1.1380 32 1 3.5811 1.9573 -2.0603 33 1 2.4596 0.6669 -2.5557 34 1 2.1987 3.5955 -3.3700 35 1 0.7854 1.0594 -4.3116 36 1 0.0680 2.3285 -3.2902 37 1 0.4329 3.9889 -5.0940 38 1 -0.5651 2.6321 -5.6701 39 1 2.8619 4.1061 -5.7249 40 1 3.5725 2.8319 -6.7446 41 1 4.2047 2.5285 -4.3644 42 1 3.1999 1.1761 -4.9385 43 1 -0.4936 1.1016 -7.5672 44 1 0.7919 0.2466 -8.4833 45 1 0.0087 2.7325 -9.2654 46 1 1.7504 2.3032 -9.2811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795957015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = -115.703455 kcal Electronic energy + Delta-G solvation = -23704.150840 eV Core-core repulsion = 20399.580784 eV Total energy + Delta-G solvation = -3304.570056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98066 -37.84670 -36.02724 -35.11447 -32.94542 -31.09701 -30.84533 -30.05768 -28.28429 -25.69567 -23.83146 -23.51124 -23.12866 -22.62832 -20.91018 -19.59447 -19.14548 -17.30063 -17.03873 -16.77182 -15.66541 -15.35058 -14.59416 -14.47203 -14.10596 -14.01116 -13.70393 -13.58779 -13.26552 -13.07932 -12.89783 -12.65968 -12.50981 -12.19568 -12.08194 -11.69679 -11.59653 -11.25194 -11.11238 -11.09779 -10.74983 -10.59181 -10.41316 -10.36801 -10.21154 -10.08147 -9.97921 -9.77885 -9.62367 -9.42343 -8.47770 -8.25948 -7.28132 -6.30680 -4.02284 3.21093 3.44909 3.47201 3.65316 3.78365 4.31952 4.53336 4.57447 4.62478 4.72648 4.89536 4.91569 5.11241 5.17847 5.25834 5.38599 5.39814 5.41973 5.50479 5.53285 5.64080 5.75301 5.78748 5.91789 6.02976 6.08022 6.16629 6.25292 6.29581 6.40182 6.43368 6.47196 6.61468 6.69044 6.74560 6.98318 7.01144 7.12902 7.31235 7.50107 7.60946 7.94592 8.17488 8.58020 8.64525 8.92425 9.68837 11.05932 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.003421 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.546146 B = 8183.577657 C = 8260.256243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.011 1.011 5 C -0.589 4.589 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.065 3.935 15 C -0.085 4.085 16 C -0.097 4.097 17 C -0.135 4.135 18 C 0.258 3.742 19 C -0.115 4.115 20 C -0.109 4.109 21 O -0.363 6.363 22 C 0.013 3.987 23 C 0.020 3.980 24 O -0.382 6.382 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.271 0.729 31 H 0.331 0.669 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 2.123 -21.308 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.007 0.993 5 C -0.628 4.628 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.307 5.307 14 C -0.065 4.065 15 C -0.104 4.104 16 C -0.134 4.134 17 C -0.173 4.173 18 C 0.182 3.818 19 C -0.153 4.153 20 C -0.147 4.147 21 O -0.283 6.283 22 C -0.063 4.063 23 C -0.056 4.056 24 O -0.303 6.303 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.267 1.762 -19.684 20.031 hybrid contribution 0.728 0.305 -1.671 1.848 sum -2.539 2.067 -21.355 21.605 Atomic orbital electron populations 1.21442 0.96479 0.97739 1.01973 1.21504 0.96381 0.98400 0.98197 1.19245 0.92968 0.91624 0.86615 0.99347 1.21926 1.30458 1.18611 0.91787 0.92857 1.25699 0.95572 0.96978 1.00089 1.70790 1.24300 1.24188 1.35761 0.83582 0.75705 0.75435 0.75799 1.20939 1.21618 1.21394 1.60568 1.50946 1.13028 1.06189 1.21950 0.93949 0.99333 0.91290 1.21199 0.94822 0.99887 0.94450 1.21379 0.97114 0.99642 0.95304 1.22141 0.97860 1.01856 0.95436 1.23432 0.95562 0.76734 0.86106 1.21797 0.93992 1.01049 0.98471 1.21499 0.98849 1.00691 0.93684 1.89301 1.66096 1.24306 1.48605 1.24350 0.95600 0.99085 0.87296 1.24154 1.01795 0.88313 0.91344 1.88885 1.90219 1.31355 1.19850 0.96555 0.91871 0.93593 0.96181 0.92594 0.91720 0.85167 0.96552 0.91953 0.91631 0.91659 0.89927 0.90555 0.91739 0.90230 0.91328 0.91706 0.91130 0.90746 0.87603 0.88542 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.53 37.16 0.35 -2.31 16 2 C -0.11 -2.53 5.47 -26.73 -0.15 -2.68 16 3 C 0.20 5.05 1.92 -68.87 -0.13 4.92 16 4 H -0.01 -0.30 7.31 -51.93 -0.38 -0.68 16 5 C -0.59 -16.01 6.92 -34.44 -0.24 -16.25 16 6 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 7 C 0.02 0.59 5.28 -17.82 -0.09 0.50 16 8 N -0.91 -27.22 13.20 55.43 0.73 -26.49 16 9 Si 1.07 25.04 29.91 -169.99 -5.08 19.96 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -14.02 5.31 -107.95 -0.57 -14.59 16 14 C 0.06 1.15 4.90 -3.82 -0.02 1.14 16 15 C -0.08 -1.23 2.28 -90.63 -0.21 -1.43 16 16 C -0.10 -1.38 4.95 -26.73 -0.13 -1.51 16 17 C -0.13 -1.69 5.29 -26.74 -0.14 -1.83 16 18 C 0.26 3.16 1.03 -26.77 -0.03 3.13 16 19 C -0.12 -1.37 5.34 -26.74 -0.14 -1.52 16 20 C -0.11 -1.41 5.06 -26.72 -0.14 -1.54 16 21 O -0.36 -4.48 9.67 -59.04 -0.57 -5.06 16 22 C 0.01 0.12 7.91 38.17 0.30 0.42 16 23 C 0.02 0.17 8.08 38.17 0.31 0.48 16 24 O -0.38 -4.55 10.87 -59.04 -0.64 -5.19 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 1.54 6.89 -51.93 -0.36 1.18 16 27 H 0.04 0.98 7.89 -51.93 -0.41 0.57 16 28 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 29 H 0.06 1.45 6.18 -51.93 -0.32 1.13 16 30 H 0.27 8.06 5.62 -40.82 -0.23 7.83 16 31 H 0.33 6.86 8.29 -39.29 -0.33 6.53 16 32 H 0.02 0.31 7.95 -51.93 -0.41 -0.11 16 33 H 0.06 1.16 7.20 -51.93 -0.37 0.78 16 34 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 35 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 36 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -30.00 349.11 -9.56 -39.56 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.23 Total: 5.05 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.45 Total: -18.50 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.16 Total: -41.08 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.21 Total: -10.25 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.00 -9.56 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795957015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.145 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds