Wall clock time and date at job start Tue Mar 31 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 H 1.08993 * 109.46761 * 54.86501 * 3 2 1 5 5 C 1.50700 * 109.46897 * 174.86466 * 3 2 1 6 6 H 1.08002 * 119.99877 * 120.00203 * 5 3 2 7 7 C 1.37875 * 120.00140 * 299.99911 * 5 3 2 8 8 N 1.31510 * 119.99663 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46763 * 90.00268 * 9 7 5 11 11 H 1.48492 * 109.47291 * 210.00080 * 9 7 5 12 12 H 1.48502 * 109.47222 * 330.00458 * 9 7 5 13 13 N 1.46903 * 109.46853 * 294.86356 * 3 2 1 14 14 C 1.46897 * 110.99415 * 154.14238 * 13 3 2 15 15 C 1.53000 * 109.47024 * 185.45771 * 14 13 3 16 16 C 1.52991 * 109.46429 * 295.05235 * 15 14 13 17 17 C 1.53020 * 109.46535 * 179.84552 * 16 15 14 18 18 C 1.52957 * 109.43462 * 59.78737 * 17 16 15 19 19 C 1.52964 * 109.81917 * 300.30153 * 18 17 16 20 20 C 1.52993 * 109.46534 * 174.99945 * 15 14 13 21 21 O 1.43711 * 109.40147 * 60.40015 * 18 17 16 22 22 C 1.44789 * 104.78817 * 95.49732 * 21 18 17 23 23 C 1.54920 * 101.72932 * 36.07138 * 22 21 18 24 24 O 1.43298 * 109.65499 * 179.72155 * 18 17 16 25 25 H 1.08997 * 109.47109 * 55.38939 * 1 2 3 26 26 H 1.08994 * 109.47510 * 175.39694 * 1 2 3 27 27 H 1.09004 * 109.46752 * 295.39755 * 1 2 3 28 28 H 1.09004 * 109.46411 * 240.00039 * 2 1 3 29 29 H 1.08998 * 109.47370 * 120.00803 * 2 1 3 30 30 H 0.97008 * 119.99437 * 180.02562 * 8 7 5 31 31 H 1.00893 * 111.00312 * 278.09516 * 13 3 2 32 32 H 1.09001 * 109.47229 * 305.45875 * 14 13 3 33 33 H 1.08998 * 109.47600 * 65.46028 * 14 13 3 34 34 H 1.08995 * 109.46216 * 55.02388 * 15 14 13 35 35 H 1.09007 * 109.47212 * 299.84152 * 16 15 14 36 36 H 1.08992 * 109.47465 * 59.84552 * 16 15 14 37 37 H 1.08997 * 109.47800 * 299.80015 * 17 16 15 38 38 H 1.09003 * 109.47828 * 179.77319 * 17 16 15 39 39 H 1.09001 * 109.47254 * 299.70289 * 19 18 17 40 40 H 1.09002 * 109.47575 * 179.67751 * 19 18 17 41 41 H 1.09005 * 109.47243 * 300.15330 * 20 15 14 42 42 H 1.09005 * 109.47155 * 60.15022 * 20 15 14 43 43 H 1.09001 * 110.98200 * 277.95784 * 22 21 18 44 44 H 1.09000 * 111.00877 * 154.19046 * 22 21 18 45 45 H 1.08997 * 110.69211 * 206.08006 * 23 22 21 46 46 H 1.08999 * 110.69612 * 82.87177 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4442 0.1272 6 1 4.1487 1.8882 -0.6480 7 6 4.1406 0.8792 1.2331 8 7 3.4013 0.3382 2.1767 9 14 6.0019 0.8807 1.3903 10 1 6.4382 2.1142 2.0929 11 1 6.4342 -0.3097 2.1656 12 1 6.6131 0.8391 0.0375 13 7 1.6543 2.0982 -1.2567 14 6 1.5554 3.5534 -1.0822 15 6 1.0219 4.1863 -2.3690 16 6 2.0353 3.9805 -3.4964 17 6 1.5000 4.6101 -4.7843 18 6 1.2728 6.1064 -4.5631 19 6 0.2638 6.3162 -3.4328 20 6 0.8010 5.6838 -2.1471 21 8 2.5186 6.7319 -4.2137 22 6 3.0353 7.2499 -5.4631 23 6 1.7367 7.6976 -6.1796 24 8 0.7775 6.7021 -5.7687 25 1 -0.3633 0.5837 -0.8458 26 1 -0.3634 -1.0243 -0.0825 27 1 -0.3633 0.4408 0.9284 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8227 -0.0590 2.9549 31 1 2.2978 1.8659 -1.9982 32 1 0.8759 3.7754 -0.2593 33 1 2.5415 3.9605 -0.8589 34 1 0.0767 3.7161 -2.6401 35 1 2.9800 4.4527 -3.2265 36 1 2.1939 2.9135 -3.6522 37 1 0.5572 4.1356 -5.0562 38 1 2.2237 4.4671 -5.5868 39 1 -0.6836 5.8481 -3.6998 40 1 0.1105 7.3840 -3.2761 41 1 0.0806 5.8295 -1.3420 42 1 1.7466 6.1547 -1.8781 43 1 3.5438 6.4692 -6.0288 44 1 3.6978 8.0981 -5.2903 45 1 1.8687 7.6818 -7.2614 46 1 1.4324 8.6882 -5.8419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795957016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:38 Heat of formation + Delta-G solvation = -115.020644 kcal Electronic energy + Delta-G solvation = -23642.412572 eV Core-core repulsion = 20337.872125 eV Total energy + Delta-G solvation = -3304.540447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93091 -37.72385 -35.66798 -35.06035 -32.67137 -31.38582 -30.80676 -30.04565 -28.22972 -26.14983 -24.00583 -23.34090 -22.78050 -22.23908 -20.62908 -19.49702 -19.27397 -17.26133 -16.86988 -16.64007 -15.61320 -15.29592 -14.77212 -14.51354 -14.32879 -13.83450 -13.55876 -13.34162 -13.12212 -12.98963 -12.82330 -12.67517 -12.19841 -12.09313 -12.00180 -11.67859 -11.42136 -11.20182 -11.13481 -11.03467 -10.83255 -10.66189 -10.42267 -10.37318 -10.22541 -10.20009 -9.94243 -9.54366 -9.36704 -9.31298 -9.00135 -8.34051 -7.17136 -5.96019 -4.08848 3.25553 3.28495 3.35661 3.38539 3.83499 4.36216 4.42049 4.61842 4.67290 4.77858 4.95647 5.00259 5.17825 5.26795 5.30125 5.31993 5.45686 5.51037 5.54991 5.61509 5.68704 5.80918 5.95554 6.02139 6.08902 6.18058 6.32527 6.35908 6.43233 6.50121 6.55492 6.58493 6.70499 6.76705 6.90913 7.02966 7.19343 7.22835 7.50080 7.64754 7.81982 8.14582 8.21123 8.39690 8.73527 9.04959 9.58612 11.03834 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004000 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.854368 B = 6997.447316 C = 7810.004577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.689 5.689 14 C 0.073 3.927 15 C -0.084 4.084 16 C -0.107 4.107 17 C -0.132 4.132 18 C 0.258 3.742 19 C -0.115 4.115 20 C -0.109 4.109 21 O -0.362 6.362 22 C 0.013 3.987 23 C 0.021 3.979 24 O -0.382 6.382 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.326 0.674 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 12.848 -14.456 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.170 4.170 18 C 0.182 3.818 19 C -0.153 4.153 20 C -0.147 4.147 21 O -0.282 6.282 22 C -0.064 4.064 23 C -0.056 4.056 24 O -0.303 6.303 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.803 12.584 -14.045 19.460 hybrid contribution 2.218 0.316 0.079 2.242 sum -2.585 12.900 -13.967 19.187 Atomic orbital electron populations 1.21710 0.99072 0.98405 1.00356 1.21488 0.92065 0.99332 1.01527 1.19123 0.92725 0.91220 0.86301 0.95148 1.21879 0.92863 1.38021 1.05459 0.92940 1.24927 0.97814 0.95039 0.95756 1.69883 1.34731 1.38391 1.09386 0.86675 0.86223 0.77498 0.78063 1.20792 1.21184 1.20036 1.60906 1.54771 1.06255 1.09947 1.21750 0.98777 0.90022 0.95139 1.21217 0.99165 0.94187 0.95764 1.21493 0.99098 1.00807 0.93083 1.22084 1.02350 0.93317 0.99247 1.23435 0.82800 0.91386 0.84214 1.21805 0.97670 1.01613 0.94191 1.21499 1.01649 0.95782 0.95811 1.89315 1.35392 1.75060 1.28472 1.24348 0.96834 0.99560 0.85623 1.24151 0.87819 0.92964 1.00656 1.88883 1.45870 1.53438 1.42137 0.93106 0.95742 0.94619 0.95229 0.89276 0.92947 0.85766 0.92293 0.95540 0.90820 0.91541 0.90900 0.90401 0.91836 0.90197 0.91404 0.91516 0.91244 0.90798 0.87613 0.88583 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.52 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.21 5.33 1.97 -68.86 -0.14 5.20 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.74 8.47 -34.44 -0.29 -15.03 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.21 11.29 55.43 0.63 -24.58 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.69 -14.38 5.58 -107.95 -0.60 -14.98 16 14 C 0.07 1.37 4.96 -3.83 -0.02 1.35 16 15 C -0.08 -1.27 2.39 -90.63 -0.22 -1.48 16 16 C -0.11 -1.54 4.83 -26.73 -0.13 -1.67 16 17 C -0.13 -1.68 5.29 -26.74 -0.14 -1.82 16 18 C 0.26 3.25 1.03 -26.77 -0.03 3.22 16 19 C -0.11 -1.41 5.34 -26.74 -0.14 -1.55 16 20 C -0.11 -1.47 5.06 -26.72 -0.14 -1.61 16 21 O -0.36 -4.67 9.67 -59.04 -0.57 -5.24 16 22 C 0.01 0.12 7.91 38.17 0.30 0.42 16 23 C 0.02 0.18 8.08 38.17 0.31 0.49 16 24 O -0.38 -4.65 10.87 -59.04 -0.64 -5.29 16 25 H 0.05 1.02 7.63 -51.93 -0.40 0.63 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.33 6.74 6.85 -39.30 -0.27 6.47 16 32 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 33 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.04 7.69 -51.92 -0.40 0.64 16 36 H 0.07 1.09 6.80 -51.93 -0.35 0.73 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -29.01 352.42 -9.80 -38.81 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.40 Total: 5.65 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.50 Total: -15.96 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.02 Total: -39.56 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.21 Total: -10.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.01 -9.80 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795957016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.213 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds