Wall clock time and date at job start Tue Mar 31 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99748 * 2 1 4 4 O 1.20832 * 120.00262 * 1.11631 * 3 2 1 5 5 C 1.50702 * 119.99794 * 181.11687 * 3 2 1 6 6 C 1.53008 * 109.47196 * 186.50577 * 5 3 2 7 7 C 1.53004 * 115.54688 * 293.33247 * 6 5 3 8 8 N 1.46907 * 109.46804 * 270.22904 * 7 6 5 9 9 C 1.46900 * 110.99564 * 66.54910 * 8 7 6 10 10 C 1.50709 * 109.46703 * 186.39453 * 9 8 7 11 11 H 1.07999 * 119.99806 * 359.26823 * 10 9 8 12 12 C 1.37885 * 119.99674 * 179.27262 * 10 9 8 13 13 N 1.31509 * 119.99769 * 184.60256 * 12 10 9 14 14 Si 1.86798 * 120.00116 * 4.60092 * 12 10 9 15 15 H 1.48498 * 109.47086 * 93.83616 * 14 12 10 16 16 H 1.48503 * 109.47014 * 213.83921 * 14 12 10 17 17 H 1.48502 * 109.47103 * 333.83561 * 14 12 10 18 18 C 1.46895 * 110.99938 * 190.50020 * 8 7 6 19 19 C 1.52993 * 109.47370 * 75.76339 * 18 8 7 20 20 C 1.52999 * 109.47250 * 62.71325 * 19 18 8 21 21 C 1.53000 * 109.47686 * 182.72082 * 19 18 8 22 22 C 1.52995 * 117.49847 * 78.99846 * 6 5 3 23 23 C 1.52999 * 117.50084 * 147.65998 * 6 5 3 24 24 H 1.08998 * 109.47046 * 184.76976 * 1 2 3 25 25 H 1.09002 * 109.47025 * 304.76621 * 1 2 3 26 26 H 1.08997 * 109.46908 * 64.76989 * 1 2 3 27 27 H 1.09001 * 109.47476 * 66.50662 * 5 3 2 28 28 H 1.08996 * 109.47552 * 306.50172 * 5 3 2 29 29 H 1.08994 * 109.46784 * 150.23753 * 7 6 5 30 30 H 1.08998 * 109.47264 * 30.22943 * 7 6 5 31 31 H 1.09004 * 109.47435 * 306.38988 * 9 8 7 32 32 H 1.08995 * 109.47765 * 66.39132 * 9 8 7 33 33 H 0.96997 * 120.00609 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.46747 * 315.76332 * 18 8 7 35 35 H 1.08994 * 109.47223 * 195.76385 * 18 8 7 36 36 H 1.09004 * 109.47309 * 302.72135 * 19 18 8 37 37 H 1.09006 * 109.46794 * 64.88655 * 20 19 18 38 38 H 1.08998 * 109.47234 * 184.88133 * 20 19 18 39 39 H 1.09000 * 109.47387 * 304.88907 * 20 19 18 40 40 H 1.08998 * 109.46924 * 55.04800 * 21 19 18 41 41 H 1.08997 * 109.47645 * 175.05810 * 21 19 18 42 42 H 1.09004 * 109.46900 * 295.05624 * 21 19 18 43 43 H 1.09000 * 117.49859 * 215.00654 * 22 6 5 44 44 H 1.09002 * 117.50435 * 0.02562 * 22 6 5 45 45 H 1.09002 * 117.49488 * 359.97438 * 23 6 5 46 46 H 1.08997 * 117.49606 * 144.99775 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0204 5 6 3.5661 1.2750 -0.0254 6 6 4.0033 2.7315 0.1433 7 6 3.6387 3.6678 -1.0105 8 7 4.7253 3.6727 -1.9991 9 6 4.8491 2.3625 -2.6517 10 6 6.0666 2.3569 -3.5401 11 1 6.6795 3.2423 -3.6217 12 6 6.3976 1.2213 -4.2487 13 7 7.5081 1.1858 -4.9523 14 14 5.2690 -0.2666 -4.2091 15 1 4.3401 -0.2142 -5.3665 16 1 6.0823 -1.5069 -4.2827 17 1 4.4873 -0.2615 -2.9464 18 6 4.5298 4.7385 -2.9910 19 6 4.8905 6.0881 -2.3673 20 6 6.3713 6.0928 -1.9827 21 6 4.6224 7.2051 -3.3780 22 6 3.9879 3.3143 1.5579 23 6 5.3205 2.9934 0.8764 24 1 -0.3633 -1.0241 0.0855 25 1 -0.3633 0.5860 0.8442 26 1 -0.3633 0.4380 -0.9296 27 1 3.9340 0.8933 -0.9778 28 1 3.9752 0.6763 0.7883 29 1 3.4922 4.6774 -0.6267 30 1 2.7194 3.3215 -1.4828 31 1 4.9496 1.5865 -1.8928 32 1 3.9602 2.1702 -3.2524 33 1 7.7413 0.3869 -5.4505 34 1 3.4872 4.7521 -3.3088 35 1 5.1701 4.5541 -3.8535 36 1 4.2834 6.2507 -1.4767 37 1 6.9808 6.0172 -2.8833 38 1 6.6082 7.0198 -1.4605 39 1 6.5800 5.2447 -1.3305 40 1 3.5886 7.1468 -3.7182 41 1 4.7955 8.1720 -2.9055 42 1 5.2923 7.0922 -4.2304 43 1 3.7181 4.3648 1.6665 44 1 3.6668 2.6601 2.3684 45 1 5.8754 2.1280 1.2388 46 1 5.9273 3.8326 0.5366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799303192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:53 Heat of formation + Delta-G solvation = -62.886739 kcal Electronic energy + Delta-G solvation = -24121.115212 eV Core-core repulsion = 20818.835461 eV Total energy + Delta-G solvation = -3302.279751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48558 -38.55827 -36.64634 -36.00183 -33.82501 -32.22794 -30.18336 -28.19703 -27.41297 -26.60200 -26.15886 -23.68556 -22.10274 -21.57177 -20.45727 -19.42628 -18.51000 -17.47729 -16.89248 -16.42136 -16.18726 -15.32137 -15.07471 -14.38997 -14.28807 -13.96809 -13.60085 -13.51999 -13.31857 -13.05427 -12.54253 -12.41556 -12.10277 -11.97695 -11.95835 -11.74253 -11.59409 -11.15780 -11.12509 -10.79215 -10.76392 -10.73831 -10.57139 -10.44885 -10.38705 -10.18426 -9.91920 -9.77712 -9.64059 -9.47714 -9.02045 -8.55400 -7.26385 -6.04708 -4.00137 2.36438 2.78982 3.26148 3.33758 3.35412 4.08011 4.41065 4.79960 4.86024 4.96141 5.04976 5.08824 5.14542 5.24831 5.30433 5.35342 5.43034 5.48440 5.53979 5.65873 5.80858 5.84548 5.92587 6.00378 6.04412 6.16219 6.21164 6.28175 6.30960 6.38199 6.46229 6.49329 6.53073 6.54408 6.60545 6.66996 6.87203 6.98543 7.05545 7.10201 7.64798 7.89101 8.00179 8.14063 8.69222 9.05677 9.58036 11.08355 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.007796 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.120656 B = 3590.792999 C = 5257.628124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.500 6.500 5 C -0.093 4.093 6 C -0.102 4.102 7 C 0.093 3.907 8 N -0.520 5.520 9 C 0.158 3.842 10 C -0.505 4.505 11 H 0.083 0.917 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.870 3.130 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.063 3.937 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.174 4.174 23 C -0.139 4.139 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.037 0.963 32 H -0.024 1.024 33 H 0.262 0.738 34 H 0.015 0.985 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 2.476 10.901 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.305 3.695 4 O -0.387 6.387 5 C -0.130 4.130 6 C -0.103 4.103 7 C -0.036 4.036 8 N -0.243 5.243 9 C 0.032 3.968 10 C -0.543 4.543 11 H 0.101 0.899 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.698 3.302 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.065 4.065 19 C -0.108 4.108 20 C -0.190 4.190 21 C -0.203 4.203 22 C -0.211 4.211 23 C -0.176 4.176 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.054 0.946 32 H -0.007 1.007 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.400 2.742 11.029 14.748 hybrid contribution -1.643 -1.135 -0.598 2.084 sum -11.043 1.607 10.431 15.275 Atomic orbital electron populations 1.23203 0.76916 1.03310 1.02401 1.86536 1.23076 1.34105 1.84460 1.23966 0.92327 0.81095 0.72091 1.90631 1.67128 1.36089 1.44827 1.21387 0.86894 0.97795 1.06946 1.20937 1.02900 0.92799 0.93663 1.21573 0.92673 0.97280 0.92033 1.61936 1.41352 1.05608 1.15420 1.20361 0.95900 0.86964 0.93577 1.21067 1.08927 1.00286 1.24049 0.89908 1.24885 0.94854 0.98110 0.95412 1.69895 1.23099 1.28991 1.31837 0.86973 0.81218 0.83261 0.78771 1.20564 1.21130 1.19238 1.22113 0.98451 0.90119 0.95844 1.21084 0.97604 0.94493 0.97645 1.21672 0.95030 1.00671 1.01651 1.21819 1.01021 0.97962 0.99500 1.23035 1.02331 1.01374 0.94397 1.22902 0.89898 1.03633 1.01135 0.88424 0.92019 0.92080 0.85604 0.88026 0.91466 0.94946 0.94584 1.00662 0.92770 0.96633 0.88913 0.92445 0.93079 0.94759 0.90919 0.93410 0.93342 0.92596 0.88968 0.89696 0.89178 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.62 101.05 1.07 1.46 16 2 O -0.36 -5.32 10.57 -39.24 -0.41 -5.74 16 3 C 0.46 7.42 7.71 36.01 0.28 7.70 16 4 O -0.50 -8.84 14.24 -18.75 -0.27 -9.10 16 5 C -0.09 -1.46 5.39 -27.88 -0.15 -1.61 16 6 C -0.10 -1.63 0.74 -154.51 -0.11 -1.74 16 7 C 0.09 1.65 4.42 -3.82 -0.02 1.64 16 8 N -0.52 -10.38 3.52 -236.07 -0.83 -11.21 16 9 C 0.16 3.68 3.24 -4.97 -0.02 3.66 16 10 C -0.51 -13.75 8.77 -34.43 -0.30 -14.05 16 11 H 0.08 2.45 7.27 -52.49 -0.38 2.07 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 14 Si 0.87 21.10 27.50 -169.99 -4.67 16.42 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.09 6.32 56.52 0.36 -5.74 16 18 C 0.06 1.20 4.22 -3.83 -0.02 1.19 16 19 C -0.09 -1.43 2.96 -90.62 -0.27 -1.70 16 20 C -0.13 -2.16 9.13 37.16 0.34 -1.82 16 21 C -0.15 -2.03 9.19 37.16 0.34 -1.69 16 22 C -0.17 -2.34 9.90 -26.70 -0.26 -2.60 16 23 C -0.14 -2.01 9.73 -26.69 -0.26 -2.27 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.13 2.26 5.03 -51.93 -0.26 2.00 16 28 H 0.10 1.32 8.08 -51.93 -0.42 0.90 16 29 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 30 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 31 H 0.04 0.83 3.82 -51.93 -0.20 0.63 16 32 H -0.02 -0.59 7.47 -51.93 -0.39 -0.98 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 35 H 0.09 2.03 6.28 -51.93 -0.33 1.70 16 36 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.29 7.54 -51.93 -0.39 0.90 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -30.17 360.68 -7.49 -37.66 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.04 Total: 2.71 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 0.53 Total: -10.00 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.06 Total: -37.40 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.68 Total: -14.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.17 -7.49 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799303192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.225 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds