Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47261 * 299.99689 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 N 1.46898 * 109.47006 * 299.99747 * 12 2 1 14 14 C 1.46903 * 110.99673 * 180.02562 * 13 12 2 15 15 C 1.52991 * 109.45900 * 275.04856 * 14 13 12 16 16 C 1.53023 * 109.46541 * 179.84762 * 15 14 13 17 17 C 1.52965 * 109.42818 * 59.78761 * 16 15 14 18 18 C 1.52954 * 109.81959 * 300.29763 * 17 16 15 19 19 C 1.52987 * 109.46421 * 155.00021 * 14 13 12 20 20 O 1.43702 * 109.40309 * 60.40364 * 17 16 15 21 21 C 1.44803 * 104.79107 * 95.49514 * 20 17 16 22 22 C 1.54918 * 101.72317 * 36.06457 * 21 20 17 23 23 O 1.43300 * 109.64725 * 179.72505 * 17 16 15 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 32 32 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 33 33 H 1.00897 * 111.00027 * 303.95091 * 13 12 2 34 34 H 1.08996 * 109.46858 * 35.01538 * 14 13 12 35 35 H 1.09000 * 109.47152 * 299.84225 * 15 14 13 36 36 H 1.08995 * 109.47521 * 59.84928 * 15 14 13 37 37 H 1.08993 * 109.47417 * 299.80133 * 16 15 14 38 38 H 1.08997 * 109.47914 * 179.77205 * 16 15 14 39 39 H 1.09001 * 109.48085 * 299.71197 * 18 17 16 40 40 H 1.08999 * 109.47579 * 179.68395 * 18 17 16 41 41 H 1.09004 * 109.47359 * 300.14972 * 19 14 13 42 42 H 1.09004 * 109.47508 * 60.14452 * 19 14 13 43 43 H 1.08998 * 110.97574 * 277.95671 * 21 20 17 44 44 H 1.09000 * 111.00714 * 154.18904 * 21 20 17 45 45 H 1.09002 * 110.68725 * 206.08016 * 22 21 20 46 46 H 1.08998 * 110.69396 * 82.88167 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8279 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2205 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0288 2.4487 14 6 2.0216 -0.6946 3.6703 15 6 1.0731 -1.8417 4.0240 16 6 1.5662 -2.5378 5.2944 17 6 1.6061 -1.5297 6.4442 18 6 2.5496 -0.3785 6.0920 19 6 2.0551 0.3140 4.8202 20 8 0.2849 -1.0122 6.6714 21 6 -0.2539 -1.8295 7.7384 22 6 1.0020 -2.0753 8.6114 23 8 2.0612 -2.1783 7.6382 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7090 1.1613 -3.4844 31 1 1.6764 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2492 33 1 1.8197 0.9435 2.4402 34 1 3.0237 -1.0901 3.5049 35 1 0.0714 -1.4463 4.1919 36 1 1.0480 -2.5586 3.2034 37 1 2.5665 -2.9363 5.1255 38 1 0.8884 -3.3526 5.5489 39 1 3.5536 -0.7691 5.9261 40 1 2.5694 0.3390 6.9123 41 1 2.7291 1.1322 4.5664 42 1 1.0525 0.7079 4.9873 43 1 -0.6486 -2.7681 7.3495 44 1 -1.0178 -1.2888 8.2970 45 1 0.9042 -3.0037 9.1740 46 1 1.1757 -1.2337 9.2820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840787002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -103.258649 kcal Electronic energy + Delta-G solvation = -23759.101125 eV Core-core repulsion = 20455.070717 eV Total energy + Delta-G solvation = -3304.030408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96845 -37.92960 -35.95656 -35.10142 -33.09672 -30.96632 -30.89738 -29.43825 -26.91839 -25.52188 -25.16343 -23.90798 -23.32811 -22.66904 -21.26142 -19.57035 -18.33937 -17.30081 -16.90989 -16.00347 -15.65589 -15.33368 -15.02458 -14.54939 -14.43731 -13.95242 -13.65103 -13.23820 -13.15948 -12.87837 -12.68386 -12.57443 -12.28031 -12.13058 -11.91264 -11.70241 -11.22549 -11.11754 -11.09821 -10.90831 -10.69984 -10.61320 -10.56729 -10.36629 -10.27549 -10.05594 -10.00577 -9.44941 -9.32548 -8.98367 -8.57610 -8.25057 -7.62105 -5.87346 -3.97733 3.21316 3.34963 3.39617 3.42351 3.78659 4.32934 4.46151 4.57635 4.62299 4.68493 4.76039 4.92279 5.14913 5.20415 5.26602 5.37836 5.39707 5.44096 5.49608 5.53057 5.61128 5.75487 5.88780 5.92909 6.00896 6.25077 6.28900 6.39605 6.44492 6.45823 6.66676 6.78603 6.95193 6.98565 7.13767 7.22560 7.44707 7.53791 7.80263 7.81477 7.89925 8.06911 8.26740 8.40004 8.60641 9.03783 9.67019 11.13096 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.039126 B = 0.003361 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.464759 B = 8327.791671 C = 8434.650160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.681 5.681 14 C 0.086 3.914 15 C -0.099 4.099 16 C -0.134 4.134 17 C 0.259 3.741 18 C -0.114 4.114 19 C -0.115 4.115 20 O -0.360 6.360 21 C 0.013 3.987 22 C 0.020 3.980 23 O -0.382 6.382 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.011 0.989 30 H 0.258 0.742 31 H 0.055 0.945 32 H 0.011 0.989 33 H 0.337 0.663 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -3.696 20.928 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.313 5.313 14 C -0.024 4.024 15 C -0.137 4.137 16 C -0.172 4.172 17 C 0.182 3.818 18 C -0.152 4.152 19 C -0.153 4.153 20 O -0.280 6.280 21 C -0.063 4.063 22 C -0.056 4.056 23 O -0.303 6.303 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.157 0.843 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.125 0.875 45 H 0.115 0.885 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.870 -3.812 20.662 21.029 hybrid contribution 1.226 -0.431 -0.737 1.494 sum 0.356 -4.243 19.926 20.376 Atomic orbital electron populations 1.21627 0.97407 0.98508 1.00045 1.18083 0.93190 0.91925 0.89973 1.21830 0.97638 0.99241 1.00272 1.21092 1.31074 1.11832 0.90570 0.93117 1.24880 0.95050 0.94982 0.98644 1.69823 1.36794 1.22824 1.22961 0.86733 0.79088 0.79853 0.82694 1.20418 1.21384 1.20494 1.22181 0.95252 0.97840 0.89938 1.60592 1.63716 1.06142 1.00898 1.21490 0.96032 0.94442 0.90477 1.21414 1.00266 0.97089 0.94957 1.22106 1.02674 0.97621 0.94847 1.23395 0.81861 0.90670 0.85839 1.21775 0.98392 0.96349 0.98728 1.21643 1.02599 0.97800 0.93300 1.89322 1.28142 1.55810 1.54769 1.24356 0.97126 0.96662 0.88199 1.24161 0.86083 1.02862 0.92517 1.88886 1.39691 1.78498 1.23213 0.96054 0.90842 0.96401 0.96297 0.89872 0.97017 0.93170 0.92655 0.97055 0.84298 0.94632 0.90561 0.91444 0.90606 0.91501 0.90264 0.91063 0.91730 0.90221 0.90759 0.87544 0.88546 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 3 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 4 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.89 -24.80 9.35 55.43 0.52 -24.28 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.08 1.62 4.38 -3.82 -0.02 1.60 16 13 N -0.68 -12.39 5.52 -106.73 -0.59 -12.98 16 14 C 0.09 1.31 2.49 -67.72 -0.17 1.14 16 15 C -0.10 -1.45 5.28 -26.72 -0.14 -1.59 16 16 C -0.13 -1.68 5.29 -26.74 -0.14 -1.82 16 17 C 0.26 3.16 1.03 -26.77 -0.03 3.13 16 18 C -0.11 -1.36 5.34 -26.74 -0.14 -1.51 16 19 C -0.12 -1.52 5.05 -26.73 -0.13 -1.66 16 20 O -0.36 -4.45 9.67 -59.04 -0.57 -5.02 16 21 C 0.01 0.11 7.91 38.17 0.30 0.41 16 22 C 0.02 0.17 8.07 38.17 0.31 0.47 16 23 O -0.38 -4.50 10.87 -59.04 -0.64 -5.14 16 24 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 25 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 29 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.05 1.20 7.43 -51.93 -0.39 0.82 16 32 H 0.01 0.24 8.05 -51.93 -0.42 -0.18 16 33 H 0.34 6.07 6.38 -39.29 -0.25 5.82 16 34 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 35 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.07 1.05 7.45 -51.93 -0.39 0.67 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -28.93 345.25 -9.33 -38.25 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.20 Total: 3.76 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.02 Total: -16.12 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.07 Total: -37.26 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.21 Total: -10.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.93 -9.33 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840787002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.006 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds