Wall clock time and date at job start Tue Mar 31 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53000 * 109.47320 * 179.97438 * 3 2 1 5 5 O 1.45198 * 109.47203 * 180.02562 * 4 3 2 6 6 C 1.34228 * 117.00329 * 179.97438 * 5 4 3 7 7 O 1.20830 * 119.99430 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00577 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.46779 * 328.13717 * 8 6 5 10 10 C 1.52996 * 109.46927 * 88.13914 * 8 6 5 11 11 N 1.46901 * 109.47291 * 208.14117 * 8 6 5 12 12 C 1.46848 * 111.00063 * 53.54864 * 11 8 6 13 13 C 1.53044 * 109.52355 * 174.15820 * 12 11 8 14 14 C 1.53115 * 109.27285 * 59.18455 * 13 12 11 15 15 C 1.53116 * 109.16396 * 302.34170 * 14 13 12 16 16 H 1.09001 * 109.50611 * 297.68090 * 15 14 13 17 17 C 1.50701 * 109.50590 * 177.59397 * 15 14 13 18 18 H 1.07998 * 120.00537 * 239.99886 * 17 15 14 19 19 C 1.37883 * 119.99590 * 60.00633 * 17 15 14 20 20 N 1.31507 * 120.00015 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99857 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46958 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46988 * 119.99736 * 21 19 17 24 24 H 1.48498 * 109.46947 * 239.99612 * 21 19 17 25 25 C 1.46851 * 110.99824 * 289.34577 * 11 8 6 26 26 H 1.08999 * 109.46907 * 59.99702 * 1 2 3 27 27 H 1.08997 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46841 * 300.00017 * 1 2 3 29 29 H 1.08999 * 109.46841 * 239.99983 * 2 1 3 30 30 H 1.08999 * 109.46907 * 120.00298 * 2 1 3 31 31 H 1.09008 * 109.47139 * 60.00419 * 3 2 1 32 32 H 1.09004 * 109.47240 * 300.00473 * 3 2 1 33 33 H 1.08999 * 109.46841 * 59.99983 * 4 3 2 34 34 H 1.08999 * 109.46907 * 300.00298 * 4 3 2 35 35 H 1.08995 * 109.47060 * 60.00347 * 10 8 6 36 36 H 1.09003 * 109.46575 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.47507 * 300.00030 * 10 8 6 38 38 H 1.09001 * 109.46850 * 294.18082 * 12 11 8 39 39 H 1.09005 * 109.46102 * 54.14884 * 12 11 8 40 40 H 1.08998 * 109.49716 * 179.12267 * 13 12 11 41 41 H 1.08992 * 109.50446 * 299.20532 * 13 12 11 42 42 H 1.09002 * 109.52450 * 62.24741 * 14 13 12 43 43 H 1.09001 * 109.52276 * 182.43975 * 14 13 12 44 44 H 0.96996 * 120.00248 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.46070 * 305.85231 * 25 11 8 46 46 H 1.08999 * 109.46566 * 65.82210 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0540 2.8114 0.0013 6 6 5.3847 2.9873 0.0024 7 8 6.1207 2.0290 0.0024 8 6 5.9608 4.3798 0.0037 9 1 5.2936 5.0495 -0.5389 10 6 6.1113 4.8681 1.4458 11 7 7.2770 4.3659 -0.6485 12 6 7.1965 3.7592 -1.9834 13 6 8.5484 3.8928 -2.6883 14 6 9.6249 3.1936 -1.8536 15 6 9.6551 3.8115 -0.4530 16 1 9.9246 4.8652 -0.5258 17 6 10.6714 3.0895 0.3937 18 1 10.3623 2.5898 1.2999 19 6 11.9960 3.0670 0.0115 20 7 12.3724 3.6752 -1.0920 21 14 13.2559 2.1727 1.0614 22 1 12.5819 1.5756 2.2423 23 1 13.8950 1.0984 0.2599 24 1 14.2924 3.1337 1.5168 25 6 8.2711 3.6803 0.1871 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9287 0.8908 35 1 6.7786 4.1984 1.9883 36 1 6.5276 5.8755 1.4467 37 1 5.1348 4.8785 1.9297 38 1 6.9393 2.7043 -1.8881 39 1 6.4303 4.2683 -2.5681 40 1 8.4927 3.4286 -3.6729 41 1 8.7995 4.9478 -2.7969 42 1 9.3942 2.1310 -1.7780 43 1 10.5967 3.3234 -2.3299 44 1 13.3041 3.6591 -1.3611 45 1 8.2854 4.1321 1.1790 46 1 8.0089 2.6258 0.2723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:13 Heat of formation + Delta-G solvation = -103.999676 kcal Electronic energy + Delta-G solvation = -23434.204424 eV Core-core repulsion = 20130.141882 eV Total energy + Delta-G solvation = -3304.062542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71464 -38.30325 -36.46574 -35.13925 -34.21777 -32.40804 -29.96880 -29.86175 -29.07183 -25.47368 -24.65266 -23.76195 -22.23106 -21.45505 -21.26895 -19.97455 -18.76942 -17.42181 -16.77956 -16.48888 -16.01614 -15.35103 -15.18141 -14.42900 -14.17590 -14.15091 -13.77151 -13.58690 -13.09821 -12.74912 -12.54542 -12.50515 -12.46922 -12.04877 -11.95866 -11.87313 -11.55988 -11.36453 -11.32935 -11.07553 -11.04957 -10.88369 -10.63080 -10.59315 -10.48816 -10.32217 -9.99662 -9.73130 -9.39708 -8.98013 -8.62754 -8.25932 -7.68518 -5.91758 -3.96865 2.38312 2.75393 3.33830 3.41577 3.46086 4.26864 4.48870 4.54385 4.57579 4.69576 4.97309 5.02153 5.12215 5.19565 5.25130 5.29042 5.38277 5.47009 5.47540 5.58652 5.61873 5.74158 5.77459 5.83053 5.88620 5.94968 6.01185 6.10327 6.23454 6.30942 6.46058 6.55257 6.64119 6.77904 6.88887 7.11516 7.25898 7.37804 7.60116 7.70643 7.82689 7.99981 8.15127 8.24074 8.55595 9.07112 9.66855 11.14452 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.003627 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.160889 B = 7717.196401 C = 8022.622732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.063 3.937 5 O -0.365 6.365 6 C 0.429 3.571 7 O -0.494 6.494 8 C 0.092 3.908 9 H 0.108 0.892 10 C -0.145 4.145 11 N -0.503 5.503 12 C 0.047 3.953 13 C -0.114 4.114 14 C -0.111 4.111 15 C 0.057 3.943 16 H 0.031 0.969 17 C -0.509 4.509 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.042 3.958 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.091 0.909 44 H 0.258 0.742 45 H 0.063 0.937 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.672 -1.559 0.931 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.012 4.012 5 O -0.282 6.282 6 C 0.269 3.731 7 O -0.380 6.380 8 C -0.019 4.019 9 H 0.126 0.874 10 C -0.202 4.202 11 N -0.227 5.227 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.050 0.950 17 C -0.548 4.548 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.084 4.084 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.147 -1.365 0.769 20.207 hybrid contribution 0.488 -1.585 0.518 1.738 sum -19.659 -2.950 1.287 19.921 Atomic orbital electron populations 1.21744 0.95207 1.01814 1.02035 1.21446 0.96321 0.95759 1.02584 1.21594 0.92697 0.97675 1.03607 1.23013 0.94602 0.81135 1.02429 1.86559 1.25812 1.31703 1.84117 1.25971 0.80212 0.94738 0.72167 1.90677 1.59560 1.43378 1.44346 1.21872 0.92501 0.88555 0.98986 0.87448 1.21893 1.02391 1.03340 0.92561 1.62700 1.02549 1.54187 1.03289 1.22259 0.99006 0.97294 0.89492 1.21636 0.94583 1.01405 0.97517 1.21656 0.98331 0.96951 0.97971 1.18654 0.88651 0.97062 0.91855 0.95038 1.21179 0.92259 1.33281 1.08047 0.92819 1.24932 0.98336 0.95515 0.95150 1.69899 1.16477 1.43637 1.22872 0.86581 0.81567 0.79540 0.80574 1.19861 1.21147 1.21090 1.22765 0.92859 0.97236 0.95525 0.92562 0.92520 0.92562 0.91626 0.91629 0.90857 0.90860 0.91546 0.91509 0.91046 0.89762 0.91819 0.94233 0.92535 0.93458 0.92062 0.95022 0.89094 0.93199 0.91835 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.03 5.59 -26.73 -0.15 -1.18 16 4 C 0.06 0.74 5.47 37.16 0.20 0.95 16 5 O -0.37 -5.13 10.22 -39.25 -0.40 -5.53 16 6 C 0.43 7.02 6.15 36.01 0.22 7.25 16 7 O -0.49 -9.77 12.20 -18.75 -0.23 -10.00 16 8 C 0.09 1.42 3.06 -68.87 -0.21 1.20 16 9 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 10 C -0.14 -1.94 8.58 37.16 0.32 -1.62 16 11 N -0.50 -9.51 4.73 -228.07 -1.08 -10.59 16 12 C 0.05 0.88 4.89 -3.83 -0.02 0.86 16 13 C -0.11 -2.32 6.09 -26.65 -0.16 -2.48 16 14 C -0.11 -2.75 5.02 -26.61 -0.13 -2.88 16 15 C 0.06 1.46 2.26 -91.69 -0.21 1.25 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.51 -14.36 8.56 -34.44 -0.29 -14.66 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.85 11.35 55.43 0.63 -25.22 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.04 0.94 3.84 -3.83 -0.01 0.92 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.07 1.08 6.19 -51.93 -0.32 0.76 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.80 6.10 -51.93 -0.32 0.49 16 39 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.36 5.82 -51.93 -0.30 1.06 16 46 H 0.06 1.35 5.67 -51.93 -0.29 1.06 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -30.60 354.39 -9.37 -39.98 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.28 Total: -0.33 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.33 Total: -10.39 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.45 Total: -35.81 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.63 Total: -15.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.60 -9.37 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.021 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds