Wall clock time and date at job start Tue Mar 31 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47450 * 179.97438 * 3 2 1 5 5 O 1.45193 * 109.47278 * 180.02562 * 4 3 2 6 6 C 1.34232 * 117.00027 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99754 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00014 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47137 * 59.99905 * 8 6 5 10 10 C 1.53000 * 109.47169 * 300.00251 * 8 6 5 11 11 N 1.46901 * 109.46973 * 179.97438 * 8 6 5 12 12 C 1.46851 * 110.99542 * 175.79167 * 11 8 6 13 13 C 1.53044 * 109.51994 * 185.84303 * 12 11 8 14 14 C 1.53123 * 109.27512 * 300.81709 * 13 12 11 15 15 C 1.53118 * 109.15778 * 57.65945 * 14 13 12 16 16 H 1.09001 * 109.54037 * 62.30404 * 15 14 13 17 17 C 1.50706 * 109.50268 * 182.40341 * 15 14 13 18 18 H 1.07995 * 120.00167 * 119.52258 * 17 15 14 19 19 C 1.37879 * 119.99394 * 299.79957 * 17 15 14 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.46842 * 111.00029 * 300.00073 * 11 8 6 26 26 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47081 * 299.99957 * 1 2 3 28 28 H 1.08994 * 109.47117 * 60.00083 * 1 2 3 29 29 H 1.09000 * 109.47485 * 240.00164 * 2 1 3 30 30 H 1.09004 * 109.47126 * 119.99915 * 2 1 3 31 31 H 1.09000 * 109.46808 * 59.99749 * 3 2 1 32 32 H 1.08994 * 109.47058 * 299.99953 * 3 2 1 33 33 H 1.09001 * 109.46553 * 59.99727 * 4 3 2 34 34 H 1.09004 * 109.47105 * 300.00105 * 4 3 2 35 35 H 1.08990 * 109.47326 * 59.99702 * 10 8 6 36 36 H 1.09002 * 109.47012 * 179.97438 * 10 8 6 37 37 H 1.08997 * 109.46961 * 299.99522 * 10 8 6 38 38 H 1.09001 * 109.46322 * 305.85548 * 12 11 8 39 39 H 1.08999 * 109.46740 * 65.82656 * 12 11 8 40 40 H 1.09001 * 109.50153 * 60.76039 * 13 12 11 41 41 H 1.09000 * 109.50059 * 180.87918 * 13 12 11 42 42 H 1.08990 * 109.52665 * 297.75102 * 14 13 12 43 43 H 1.08997 * 109.51718 * 177.55885 * 14 13 12 44 44 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 45 45 H 1.08993 * 109.46277 * 54.14433 * 25 11 8 46 46 H 1.09000 * 109.46334 * 294.17171 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0539 2.8115 0.0013 6 6 5.3847 2.9875 0.0013 7 8 6.1207 2.0292 0.0014 8 6 5.9606 4.3800 0.0014 9 1 5.6246 4.9122 0.8914 10 6 5.4891 5.1270 -1.2479 11 7 7.4276 4.3032 0.0021 12 6 8.0247 5.6411 -0.0985 13 6 9.5431 5.5140 -0.2415 14 6 10.1053 4.7739 0.9754 15 6 9.4319 3.4031 1.0851 16 1 9.6649 2.8107 0.2003 17 6 9.9365 2.6916 2.3141 18 1 9.2465 2.4063 3.0944 19 6 11.2799 2.4100 2.4448 20 7 12.1209 2.7627 1.4973 21 14 11.9051 1.5275 3.9678 22 1 11.8741 0.0607 3.7378 23 1 13.2990 1.9549 4.2503 24 1 11.0395 1.8653 5.1261 25 6 7.9167 3.5913 1.1896 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9336 0.9286 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 4.4007 5.1840 -1.2479 36 1 5.9053 6.1344 -1.2476 37 1 5.8251 4.5949 -2.1378 38 1 7.6195 6.1550 -0.9702 39 1 7.7910 6.2116 0.8004 40 1 9.7778 4.9554 -1.1476 41 1 9.9874 6.5076 -0.3004 42 1 9.9047 5.3515 1.8777 43 1 11.1809 4.6430 0.8572 44 1 13.0660 2.5649 1.5895 45 1 7.4332 2.6166 1.2535 46 1 7.6836 4.1715 2.0825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852320021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:25 Heat of formation + Delta-G solvation = -118.307917 kcal Electronic energy + Delta-G solvation = -23214.788330 eV Core-core repulsion = 19910.105336 eV Total energy + Delta-G solvation = -3304.682993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80623 -39.79372 -37.79194 -36.08708 -35.89551 -34.06813 -31.84285 -31.09261 -30.20678 -27.14151 -26.04262 -24.88176 -23.80993 -22.81819 -22.12769 -21.27098 -20.43670 -18.61256 -18.49325 -17.80956 -17.35469 -16.88363 -16.50562 -16.21051 -15.51719 -15.18952 -15.06527 -14.56479 -14.47390 -14.42173 -14.14384 -14.05184 -13.46882 -13.26320 -13.07650 -12.98142 -12.88655 -12.76972 -12.67974 -12.48646 -12.43638 -12.24641 -12.01174 -11.87731 -11.73550 -11.70229 -11.43346 -11.40069 -11.20383 -10.82373 -10.53624 -10.36651 -9.22533 -8.09803 -6.24013 1.17525 1.37653 1.38939 1.49079 1.51828 2.40536 2.97344 3.16472 3.57193 3.85969 3.93114 3.96581 4.05381 4.16796 4.19121 4.29762 4.30943 4.38751 4.43480 4.58227 4.59152 4.68059 4.81939 4.84951 4.86752 4.87706 4.93715 4.97577 5.01015 5.07137 5.16538 5.23124 5.27835 5.29959 5.38703 5.42426 5.47742 5.51020 5.61210 5.91117 6.11110 6.19311 6.23332 6.43203 6.79990 6.87890 7.43126 8.95124 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.004022 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.044137 B = 6960.174209 C = 8380.153390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.108 4.108 4 C 0.059 3.941 5 O -0.353 6.353 6 C 0.461 3.539 7 O -0.521 6.521 8 C 0.088 3.912 9 H 0.088 0.912 10 C -0.133 4.133 11 N -0.539 5.539 12 C 0.064 3.936 13 C -0.111 4.111 14 C -0.105 4.105 15 C 0.058 3.942 16 H -0.013 1.013 17 C -0.538 4.538 18 H 0.045 0.955 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 0.956 3.044 22 H -0.278 1.278 23 H -0.278 1.278 24 H -0.268 1.268 25 C 0.070 3.930 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.261 0.739 45 H 0.063 0.937 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.522 3.936 -5.033 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.015 4.015 5 O -0.270 6.270 6 C 0.304 3.696 7 O -0.409 6.409 8 C -0.021 4.021 9 H 0.106 0.894 10 C -0.190 4.190 11 N -0.266 5.266 12 C -0.062 4.062 13 C -0.148 4.148 14 C -0.144 4.144 15 C 0.039 3.961 16 H 0.006 0.994 17 C -0.577 4.577 18 H 0.063 0.937 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.057 4.057 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -21.019 3.351 -5.493 21.982 hybrid contribution 0.819 -0.727 1.609 1.946 sum -20.200 2.624 -3.884 20.736 Atomic orbital electron populations 1.21730 0.94000 1.02396 1.02450 1.21464 0.97282 0.94797 1.02586 1.21585 0.89832 0.98771 1.04343 1.23297 0.96691 0.79495 1.02018 1.86446 1.23423 1.33160 1.83971 1.24087 0.80679 0.93047 0.71795 1.90681 1.60782 1.44302 1.45110 1.21364 0.88771 0.88832 1.03120 0.89408 1.21862 1.02796 1.00642 0.93730 1.61732 1.03734 1.19416 1.41688 1.22225 0.94714 0.87684 1.01620 1.21597 0.94969 1.00055 0.98210 1.21478 1.01549 0.95934 0.95394 1.18501 0.89732 0.93408 0.94410 0.99435 1.21496 0.93259 1.37941 1.04971 0.93713 1.25733 0.97049 0.96409 0.99328 1.70037 1.03204 1.47665 1.34489 0.85602 0.77683 0.78736 0.79897 1.20373 1.20284 1.19289 1.22222 0.97818 0.97339 0.88316 0.91920 0.92263 0.92007 0.91533 0.91904 0.90327 0.89813 0.91766 0.92430 0.88851 0.88721 0.92149 0.87405 0.94460 0.93381 0.90232 0.95538 0.92389 0.92980 0.91871 0.96971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.70 5.93 30.60 0.18 -1.52 16 3 C -0.11 -1.73 5.59 30.60 0.17 -1.56 16 4 C 0.06 1.39 5.47 71.98 0.39 1.79 16 5 O -0.35 -9.62 10.12 -51.43 -0.52 -10.14 16 6 C 0.46 15.53 6.94 71.24 0.49 16.03 16 7 O -0.52 -22.48 13.60 21.96 0.30 -22.18 16 8 C 0.09 2.61 2.59 44.17 0.11 2.72 16 9 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 10 C -0.13 -2.73 8.77 71.98 0.63 -2.10 16 11 N -0.54 -20.45 4.33 -875.49 -3.79 -24.24 16 12 C 0.06 2.05 5.13 86.33 0.44 2.50 16 13 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 14 C -0.11 -5.24 5.03 30.67 0.15 -5.08 16 15 C 0.06 3.22 2.26 -11.48 -0.03 3.20 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.54 -32.15 8.56 25.60 0.22 -31.93 16 18 H 0.04 2.65 7.74 -2.91 -0.02 2.63 16 19 C 0.01 0.79 5.31 84.66 0.45 1.24 16 20 N -0.91 -55.48 11.36 21.45 0.24 -55.23 16 21 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 C 0.07 3.31 4.29 86.33 0.37 3.68 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 35 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.09 1.55 6.22 -2.39 -0.01 1.54 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 2.62 5.90 -2.39 -0.01 2.60 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 3.25 6.16 -2.39 -0.01 3.23 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.06 3.24 5.25 -2.39 -0.01 3.23 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -71.81 358.24 3.68 -68.13 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.92 Total: 11.75 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.50 Total: -16.00 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.54 Total: -79.47 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.22 Total: -32.33 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.81 3.68 -68.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.174 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds