Wall clock time and date at job start Tue Mar 31 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.53000 * 109.47509 * 179.97438 * 3 2 1 5 5 O 1.45205 * 109.47437 * 179.97438 * 4 3 2 6 6 C 1.34221 * 116.99814 * 180.02562 * 5 4 3 7 7 O 1.20831 * 120.00230 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99941 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47247 * 180.02562 * 8 6 5 10 10 N 1.46900 * 109.47047 * 180.02562 * 9 8 6 11 11 C 1.46929 * 110.98461 * 294.22754 * 10 9 8 12 12 C 1.53037 * 109.47910 * 174.18240 * 11 10 9 13 13 C 1.53114 * 109.31211 * 59.15772 * 12 11 10 14 14 C 1.53126 * 109.16239 * 302.32855 * 13 12 11 15 15 H 1.09006 * 109.49902 * 297.71480 * 14 13 12 16 16 C 1.50701 * 109.50380 * 177.59650 * 14 13 12 17 17 H 1.08000 * 119.99638 * 239.99600 * 16 14 13 18 18 C 1.37877 * 120.00105 * 59.99644 * 16 14 13 19 19 N 1.31517 * 119.99918 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99983 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46933 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47170 * 119.99980 * 20 18 16 23 23 H 1.48500 * 109.47365 * 240.00414 * 20 18 16 24 24 C 1.46850 * 110.99740 * 169.99968 * 10 9 8 25 25 H 1.08995 * 109.47386 * 300.00256 * 1 2 3 26 26 H 1.09000 * 109.46914 * 60.00113 * 1 2 3 27 27 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47230 * 240.00239 * 2 1 3 29 29 H 1.09000 * 109.46914 * 119.99887 * 2 1 3 30 30 H 1.09005 * 109.47163 * 59.99558 * 3 2 1 31 31 H 1.08997 * 109.47330 * 300.00250 * 3 2 1 32 32 H 1.09005 * 109.46743 * 60.00298 * 4 3 2 33 33 H 1.08997 * 109.47320 * 300.00613 * 4 3 2 34 34 H 1.09001 * 109.47060 * 60.00188 * 8 6 5 35 35 H 1.09000 * 109.46798 * 300.00358 * 8 6 5 36 36 H 1.09001 * 109.47127 * 59.99996 * 9 8 6 37 37 H 1.08999 * 109.46914 * 300.00151 * 9 8 6 38 38 H 1.08994 * 109.51866 * 54.15475 * 11 10 9 39 39 H 1.09007 * 109.45009 * 294.16157 * 11 10 9 40 40 H 1.09002 * 109.50283 * 299.19589 * 12 11 10 41 41 H 1.09003 * 109.50113 * 179.11776 * 12 11 10 42 42 H 1.09006 * 109.52545 * 62.23190 * 13 12 11 43 43 H 1.08997 * 109.52864 * 182.35913 * 13 12 11 44 44 H 0.97000 * 119.99592 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.46198 * 65.82029 * 24 10 9 46 46 H 1.08999 * 109.45191 * 305.84745 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0539 2.8116 0.0000 6 6 5.3846 2.9874 0.0000 7 8 6.1207 2.0292 -0.0001 8 6 5.9606 4.3800 -0.0001 9 6 7.4885 4.3000 -0.0008 10 7 8.0500 5.6575 -0.0002 11 6 7.7303 6.3596 -1.2507 12 6 8.2034 7.8119 -1.1558 13 6 9.7137 7.8372 -0.9055 14 6 10.0240 7.0583 0.3759 15 1 9.5389 7.5434 1.2230 16 6 11.5142 7.0280 0.5980 17 1 12.0348 6.0827 0.6396 18 6 12.2130 8.2071 0.7480 19 7 11.5788 9.3582 0.6978 20 14 14.0601 8.1696 1.0240 21 1 14.5296 6.7608 1.0400 22 1 14.7395 8.9048 -0.0729 23 1 14.3796 8.8131 2.3236 24 6 9.4989 5.6276 0.2372 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9336 0.9286 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 5.6248 4.9122 0.8899 35 1 5.6246 4.9122 -0.8900 36 1 7.8241 3.7680 -0.8911 37 1 7.8249 3.7677 0.8889 38 1 6.6530 6.3385 -1.4150 39 1 8.2341 5.8672 -2.0825 40 1 7.6898 8.3089 -0.3327 41 1 7.9805 8.3290 -2.0891 42 1 10.2302 7.3749 -1.7467 43 1 10.0477 8.8689 -0.7955 44 1 12.0704 10.1877 0.8037 45 1 9.9943 5.1386 -0.6016 46 1 9.7052 5.0745 1.1535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:39 Heat of formation + Delta-G solvation = -115.809971 kcal Electronic energy + Delta-G solvation = -22155.515516 eV Core-core repulsion = 18850.940842 eV Total energy + Delta-G solvation = -3304.574674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57784 -38.31883 -37.01167 -35.31115 -34.21982 -32.24058 -30.58293 -29.91129 -29.30699 -25.05774 -24.92569 -23.61652 -21.79450 -21.59167 -21.44776 -20.10349 -18.63062 -17.73969 -17.02145 -16.51438 -16.21429 -15.71959 -14.96843 -14.61815 -14.49271 -14.07620 -13.94806 -13.58754 -13.46596 -13.10312 -12.75566 -12.51668 -12.41824 -12.22925 -12.13295 -11.77416 -11.56840 -11.54597 -11.46011 -11.18525 -10.95130 -10.94295 -10.70011 -10.66125 -10.58847 -10.46484 -10.05736 -9.82778 -9.46179 -9.03475 -8.68415 -8.29208 -7.71140 -5.96065 -4.01927 2.16313 2.49917 3.31269 3.39346 3.43405 4.26482 4.44067 4.45445 4.54239 4.64414 4.80722 4.84443 4.99651 5.06901 5.09917 5.19950 5.34152 5.35656 5.36335 5.49540 5.56791 5.64933 5.68812 5.76785 5.77554 5.85644 5.98887 6.06037 6.09313 6.26280 6.36648 6.42593 6.52306 6.71108 6.76340 6.97391 7.22403 7.39558 7.62509 7.68302 7.76685 7.81217 8.09743 8.18845 8.49761 9.02302 9.62362 11.09956 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.002436 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.721311 B =11489.572205 C =11881.896793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.065 3.935 5 O -0.360 6.360 6 C 0.464 3.536 7 O -0.510 6.510 8 C -0.111 4.111 9 C 0.067 3.933 10 N -0.539 5.539 11 C 0.057 3.943 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.054 3.946 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.069 3.931 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.024 0.976 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.259 0.741 45 H 0.021 0.979 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.644 -13.123 -2.902 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.009 4.009 5 O -0.277 6.277 6 C 0.307 3.693 7 O -0.397 6.397 8 C -0.148 4.148 9 C -0.062 4.062 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.035 3.965 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.058 4.058 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.615 -12.995 -2.504 23.663 hybrid contribution 1.421 -0.603 -0.572 1.646 sum -18.195 -13.599 -3.076 22.922 Atomic orbital electron populations 1.21747 0.95116 1.01881 1.02136 1.21442 0.96436 0.95612 1.02554 1.21615 0.92473 0.97826 1.03865 1.23074 0.94816 0.80432 1.02599 1.86501 1.24939 1.32089 1.84195 1.23940 0.80260 0.93106 0.71956 1.90670 1.60332 1.43418 1.45324 1.21454 0.97075 0.89883 1.06436 1.21814 0.91056 0.91344 1.01981 1.62004 1.15542 1.14094 1.34721 1.22146 0.98797 0.96171 0.89965 1.21673 0.99876 0.93853 1.00088 1.21660 0.90715 1.04409 0.98155 1.18682 0.94749 0.88510 0.94513 0.94688 1.21193 0.92576 0.92473 1.48997 0.92761 1.24936 0.98147 0.95584 0.95231 1.69903 1.35263 0.97202 1.50365 0.86570 0.85873 0.78025 0.77710 1.19863 1.21125 1.21050 1.22319 0.83276 1.01384 0.98800 0.92487 0.92522 0.92477 0.91633 0.91594 0.90670 0.90725 0.91339 0.91245 0.86710 0.87708 0.94582 0.90200 0.92245 0.95739 0.92008 0.93505 0.95175 0.89053 0.93135 0.96112 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.84 5.59 -26.73 -0.15 -0.99 16 4 C 0.06 0.61 5.47 37.16 0.20 0.81 16 5 O -0.36 -4.19 10.22 -39.23 -0.40 -4.59 16 6 C 0.46 6.14 7.96 36.01 0.29 6.42 16 7 O -0.51 -8.13 15.73 -18.75 -0.30 -8.43 16 8 C -0.11 -1.38 5.74 -27.88 -0.16 -1.54 16 9 C 0.07 1.04 4.25 -3.82 -0.02 1.02 16 10 N -0.54 -9.83 4.66 -234.60 -1.09 -10.92 16 11 C 0.06 0.97 5.30 -3.79 -0.02 0.95 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 14 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 16 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.32 11.35 55.43 0.63 -24.69 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.10 1.16 6.43 -51.93 -0.33 0.83 16 36 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 38 H 0.06 0.85 6.22 -51.93 -0.32 0.52 16 39 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -29.73 364.05 -9.78 -39.51 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.53 Total: -2.78 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.56 Total: -9.92 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.46 Total: -35.61 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.70 Total: -13.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.73 -9.78 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.300 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds