Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.46884 * 180.02562 * 4 3 2 6 6 C 1.34231 * 116.99983 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00142 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47065 * 179.97438 * 8 6 5 10 10 N 1.46904 * 109.47296 * 179.97438 * 9 8 6 11 11 C 1.46842 * 110.99802 * 45.79035 * 10 9 8 12 12 C 1.53032 * 109.52213 * 185.83760 * 11 10 9 13 13 C 1.53118 * 109.28351 * 300.82258 * 12 11 10 14 14 C 1.53114 * 109.16184 * 57.64877 * 13 12 11 15 15 H 1.09004 * 109.53361 * 62.30710 * 14 13 12 16 16 C 1.50698 * 109.50709 * 182.40641 * 14 13 12 17 17 H 1.08005 * 119.99913 * 119.80558 * 16 14 13 18 18 C 1.37873 * 120.00144 * 299.80983 * 16 14 13 19 19 N 1.31518 * 119.99732 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99952 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47435 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47013 * 120.00241 * 20 18 16 23 23 H 1.48505 * 109.47185 * 239.99676 * 20 18 16 24 24 C 1.46850 * 110.99727 * 170.00028 * 10 9 8 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 34 34 H 1.09005 * 109.47107 * 299.99311 * 8 6 5 35 35 H 1.08998 * 109.47871 * 59.99674 * 8 6 5 36 36 H 1.09001 * 109.47487 * 299.99879 * 9 8 6 37 37 H 1.08998 * 109.47295 * 59.99586 * 9 8 6 38 38 H 1.08999 * 109.46579 * 305.85669 * 11 10 9 39 39 H 1.09006 * 109.46510 * 65.82235 * 11 10 9 40 40 H 1.09002 * 109.50243 * 180.87929 * 12 11 10 41 41 H 1.09000 * 109.53845 * 60.78454 * 12 11 10 42 42 H 1.09004 * 109.51753 * 297.74850 * 13 12 11 43 43 H 1.08991 * 109.57799 * 177.59362 * 13 12 11 44 44 H 0.97003 * 119.99583 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.46253 * 294.16990 * 24 10 9 46 46 H 1.08994 * 109.46181 * 54.15850 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 8 4.0540 2.8112 0.0000 6 6 5.3848 2.9871 -0.0010 7 8 6.1208 2.0289 -0.0019 8 6 5.9608 4.3797 0.0001 9 6 7.4887 4.2995 -0.0007 10 7 8.0503 5.6570 -0.0002 11 6 7.3686 6.5081 0.9833 12 6 7.8772 7.9457 0.8552 13 6 9.3896 7.9701 1.0926 14 6 10.0713 7.0384 0.0868 15 1 9.8890 7.3990 -0.9256 16 6 11.5546 7.0109 0.3515 17 1 12.0412 6.0798 0.6021 18 6 12.2905 8.1743 0.2739 19 7 11.6979 9.3079 -0.0317 20 14 14.1290 8.1402 0.6028 21 1 14.5490 6.7523 0.9227 22 1 14.8563 8.6116 -0.6031 23 1 14.4433 9.0298 1.7496 24 6 9.4992 5.6270 0.2371 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9286 -0.8908 34 1 5.6242 4.9128 -0.8890 35 1 5.6257 4.9109 0.8909 36 1 7.8251 3.7665 0.8886 37 1 7.8242 3.7683 -0.8913 38 1 6.2943 6.4853 0.8007 39 1 7.5740 6.1383 1.9879 40 1 7.3824 8.5741 1.5958 41 1 7.6597 8.3217 -0.1445 42 1 9.6047 7.6317 2.1062 43 1 9.7638 8.9852 0.9605 44 1 12.2156 10.1265 -0.0859 45 1 9.6946 5.2615 1.2452 46 1 9.9722 4.9644 -0.4876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = -112.708579 kcal Electronic energy + Delta-G solvation = -22192.690667 eV Core-core repulsion = 18888.250479 eV Total energy + Delta-G solvation = -3304.440188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60734 -38.39343 -37.02069 -35.32081 -34.27456 -32.20237 -30.63660 -29.93296 -29.22870 -25.12516 -24.92604 -23.66616 -21.80423 -21.62384 -21.52173 -19.95137 -18.63178 -17.79585 -17.03459 -16.54488 -16.22069 -15.73193 -14.98421 -14.63865 -14.48651 -14.09869 -14.00467 -13.58345 -13.43232 -13.17347 -12.68341 -12.54706 -12.43467 -12.23471 -12.14031 -11.76585 -11.56133 -11.51412 -11.42666 -11.19314 -11.10427 -10.94785 -10.71159 -10.67277 -10.58241 -10.46077 -10.03856 -9.81341 -9.45347 -9.03090 -8.68067 -8.28869 -7.69198 -5.96009 -4.01799 2.14377 2.48179 3.31339 3.39420 3.43516 4.26082 4.43733 4.44683 4.53615 4.63833 4.77685 4.83653 4.96187 5.05032 5.08071 5.14699 5.34265 5.34945 5.35382 5.47198 5.53270 5.63146 5.65866 5.76100 5.76741 5.84963 5.99469 6.04776 6.12050 6.24230 6.34297 6.42844 6.52449 6.70764 6.76035 6.97855 7.22187 7.39358 7.61903 7.67211 7.76607 7.81186 8.10000 8.18781 8.49845 9.02445 9.62478 11.10106 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.049463 B = 0.002442 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.947501 B =11461.062904 C =11883.773913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.065 3.935 5 O -0.360 6.360 6 C 0.464 3.536 7 O -0.508 6.508 8 C -0.117 4.117 9 C 0.067 3.933 10 N -0.538 5.538 11 C 0.052 3.948 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.054 3.946 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.068 3.932 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.259 0.741 45 H 0.021 0.979 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.344 -12.874 0.813 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.009 4.009 5 O -0.277 6.277 6 C 0.307 3.693 7 O -0.396 6.396 8 C -0.155 4.155 9 C -0.061 4.061 10 N -0.263 5.263 11 C -0.076 4.076 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.035 3.965 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.058 4.058 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.174 -12.808 0.324 23.898 hybrid contribution 1.184 -0.504 1.027 1.647 sum -18.990 -13.312 1.351 23.230 Atomic orbital electron populations 1.21747 0.95111 1.01890 1.02133 1.21440 0.96440 0.95602 1.02565 1.21615 0.92458 0.97841 1.03861 1.23076 0.94822 0.80400 1.02620 1.86499 1.24906 1.32132 1.84206 1.23911 0.80285 0.93061 0.72029 1.90672 1.60322 1.43375 1.45210 1.21624 0.97234 0.90170 1.06438 1.21876 0.90515 0.91707 1.02036 1.62141 1.05826 1.08335 1.49959 1.22209 0.97358 0.95124 0.92892 1.21672 0.99246 0.93650 1.00928 1.21656 0.90657 1.04427 0.98199 1.18678 0.93501 0.88116 0.96161 0.94670 1.21193 0.92712 0.94110 1.47227 0.92765 1.24936 0.98205 0.95598 0.95160 1.69905 1.35294 0.98733 1.48805 0.86569 0.85811 0.77999 0.77796 1.19864 1.21050 1.21122 1.22329 0.83936 1.01579 0.97998 0.92498 0.92469 0.92512 0.91594 0.91622 0.90718 0.90677 0.91317 0.91233 0.86712 0.87389 0.94496 0.90140 0.91836 0.95783 0.93493 0.92001 0.95181 0.89078 0.93135 0.96100 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.15 0.37 -0.38 16 2 C -0.12 -0.70 5.93 -26.74 -0.16 -0.86 16 3 C -0.12 -0.83 5.59 -26.73 -0.15 -0.98 16 4 C 0.06 0.61 5.47 37.16 0.20 0.81 16 5 O -0.36 -4.16 10.22 -39.26 -0.40 -4.56 16 6 C 0.46 6.10 7.96 36.01 0.29 6.39 16 7 O -0.51 -8.09 15.73 -18.75 -0.29 -8.39 16 8 C -0.12 -1.44 5.06 -27.88 -0.14 -1.58 16 9 C 0.07 1.04 4.56 -3.82 -0.02 1.03 16 10 N -0.54 -9.84 4.81 -234.67 -1.13 -10.97 16 11 C 0.05 0.88 4.85 -3.84 -0.02 0.86 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.40 16 13 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 14 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.35 11.36 55.43 0.63 -24.72 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.07 1.47 4.65 -3.83 -0.02 1.45 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.11 1.20 6.21 -51.93 -0.32 0.87 16 36 H 0.04 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -29.86 362.96 -9.79 -39.65 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.51 Total: -2.75 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.54 Total: -10.09 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.50 Total: -35.69 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.70 Total: -12.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.86 -9.79 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.057 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds