Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47476 * 2 1 4 4 C 1.52999 * 109.47145 * 185.28070 * 3 2 1 5 5 H 1.09003 * 109.47562 * 55.04086 * 4 3 2 6 6 C 1.52997 * 109.47215 * 295.04039 * 4 3 2 7 7 C 1.53001 * 109.47452 * 174.35982 * 6 4 3 8 8 C 1.50698 * 109.47151 * 175.04073 * 4 3 2 9 9 O 1.20825 * 120.00233 * 359.97438 * 8 4 3 10 10 O 1.34228 * 120.00214 * 180.02562 * 8 4 3 11 11 C 1.45200 * 117.00207 * 180.02562 * 10 8 4 12 12 C 1.53043 * 109.46123 * 270.06527 * 11 10 8 13 13 C 1.53185 * 109.31468 * 178.61420 * 12 11 10 14 14 N 1.46931 * 108.77653 * 54.63207 * 13 12 11 15 15 C 1.36933 * 120.62716 * 126.41115 * 14 13 12 16 16 H 1.08000 * 120.00444 * 330.25913 * 15 14 13 17 17 C 1.38814 * 119.99804 * 150.25680 * 15 14 13 18 18 N 1.31624 * 119.99948 * 162.11721 * 17 15 14 19 19 Si 1.86796 * 119.99979 * 342.11536 * 17 15 14 20 20 H 1.48501 * 109.46988 * 87.61537 * 19 17 15 21 21 H 1.48503 * 109.47281 * 207.61082 * 19 17 15 22 22 H 1.48495 * 109.47310 * 327.61445 * 19 17 15 23 23 C 1.46924 * 118.74015 * 306.39588 * 14 13 12 24 24 C 1.53041 * 109.46223 * 149.99473 * 11 10 8 25 25 H 1.08996 * 109.47434 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46983 * 300.00486 * 1 2 3 27 27 H 1.09002 * 109.46575 * 60.00035 * 1 2 3 28 28 H 1.08998 * 109.46965 * 239.99115 * 2 1 3 29 29 H 1.09008 * 109.46998 * 120.00007 * 2 1 3 30 30 H 1.08993 * 109.47345 * 65.27798 * 3 2 1 31 31 H 1.09000 * 109.46698 * 305.27710 * 3 2 1 32 32 H 1.08996 * 109.47316 * 54.35893 * 6 4 3 33 33 H 1.09010 * 109.47029 * 294.36242 * 6 4 3 34 34 H 1.08996 * 109.46923 * 308.36641 * 7 6 4 35 35 H 1.09000 * 109.47027 * 188.36113 * 7 6 4 36 36 H 1.09006 * 109.46628 * 68.36245 * 7 6 4 37 37 H 1.08998 * 109.46036 * 30.02214 * 11 10 8 38 38 H 1.09005 * 109.49245 * 298.56828 * 12 11 10 39 39 H 1.09002 * 109.49216 * 58.66042 * 12 11 10 40 40 H 1.09000 * 109.58931 * 294.84778 * 13 12 11 41 41 H 1.08997 * 109.70385 * 174.49142 * 13 12 11 42 42 H 0.97005 * 119.99907 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.58253 * 293.81391 * 23 14 13 44 44 H 1.08995 * 109.70083 * 173.46246 * 23 14 13 45 45 H 1.09003 * 109.50261 * 301.34060 * 24 11 10 46 46 H 1.09005 * 109.49654 * 61.39878 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5643 1.4444 -0.1328 5 1 3.8524 0.8821 -1.0210 6 6 4.1849 0.7947 1.1056 7 6 5.6974 0.6690 0.9118 8 6 4.0560 2.8636 -0.2552 9 8 3.2682 3.7795 -0.2386 10 8 5.3692 3.1102 -0.3839 11 6 5.7709 4.5010 -0.4963 12 6 5.7847 4.9101 -1.9709 13 6 6.1752 6.3871 -2.0833 14 7 7.4532 6.5926 -1.3880 15 6 8.5087 7.1844 -2.0289 16 1 8.6204 7.0775 -3.0977 17 6 9.4353 7.9219 -1.3046 18 7 10.6138 8.1914 -1.8253 19 14 9.0097 8.5318 0.4089 20 1 9.3563 7.4877 1.4063 21 1 9.7788 9.7685 0.6994 22 1 7.5557 8.8242 0.4833 23 6 7.5769 6.1513 0.0079 24 6 7.1706 4.6770 0.0969 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.7560 1.9283 0.9334 31 1 1.6016 1.9828 -0.8390 32 1 3.7537 -0.1958 1.2510 33 1 3.9807 1.4118 1.9806 34 1 5.9023 0.1802 -0.0406 35 1 6.1195 0.0758 1.7230 36 1 6.1478 1.6617 0.9151 37 1 5.0645 5.1281 0.0477 38 1 6.5090 4.3001 -2.5109 39 1 4.7931 4.7624 -2.3987 40 1 5.4049 7.0049 -1.6220 41 1 6.2824 6.6600 -3.1331 42 1 11.2611 8.7071 -1.3193 43 1 6.9208 6.7500 0.6398 44 1 8.6087 6.2667 0.3397 45 1 7.1656 4.3634 1.1408 46 1 7.8818 4.0688 -0.4622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873512552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = -94.163794 kcal Electronic energy + Delta-G solvation = -23453.607838 eV Core-core repulsion = 20149.971812 eV Total energy + Delta-G solvation = -3303.636026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66847 -38.06361 -36.68347 -35.90782 -33.46878 -32.60377 -30.63063 -30.39015 -29.37548 -25.78430 -24.63669 -23.15912 -22.89391 -22.03713 -21.28941 -19.97110 -19.56729 -17.54352 -17.07726 -16.54811 -15.82125 -15.36926 -15.11153 -14.50760 -14.22281 -14.11917 -13.88679 -13.63743 -13.50885 -13.13370 -12.97132 -12.85965 -12.48053 -12.22247 -12.08729 -11.95452 -11.85905 -11.62516 -11.27721 -11.20963 -11.04299 -11.01482 -10.86270 -10.78105 -10.68281 -10.47445 -10.28168 -10.09363 -9.80738 -9.74213 -9.43145 -8.66175 -7.01288 -5.97282 -3.37240 2.32182 2.79870 3.28227 3.46294 3.49330 4.38973 4.49612 4.52252 4.54365 4.80320 4.88554 4.90213 4.97867 5.13828 5.15480 5.22384 5.26060 5.36436 5.40799 5.44889 5.52044 5.55158 5.62174 5.62917 5.76199 5.82795 5.84724 5.93272 5.97473 5.99622 6.08798 6.10491 6.15147 6.21836 6.32328 6.36547 6.54173 6.57575 6.63758 6.71999 6.93703 7.92047 7.94404 8.30892 8.89829 9.67928 10.05394 11.18686 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.003608 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.604203 B = 7759.602569 C = 8013.200536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.083 4.083 5 H 0.106 0.894 6 C -0.115 4.115 7 C -0.161 4.161 8 C 0.461 3.539 9 O -0.511 6.511 10 O -0.348 6.348 11 C 0.095 3.905 12 C -0.147 4.147 13 C 0.152 3.848 14 N -0.606 5.606 15 C -0.262 4.262 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.128 4.128 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.263 0.737 43 H 0.027 0.973 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 -17.515 5.488 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.102 4.102 5 H 0.124 0.876 6 C -0.152 4.152 7 C -0.218 4.218 8 C 0.304 3.696 9 O -0.400 6.400 10 O -0.265 6.265 11 C 0.041 3.959 12 C -0.186 4.186 13 C 0.026 3.974 14 N -0.330 5.330 15 C -0.390 4.390 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.552 5.552 19 Si 0.716 3.284 20 H -0.213 1.213 21 H -0.230 1.230 22 H -0.197 1.197 23 C 0.000 4.000 24 C -0.167 4.167 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.786 -17.091 5.478 23.902 hybrid contribution -0.170 0.524 0.940 1.090 sum -15.955 -16.567 6.418 23.880 Atomic orbital electron populations 1.21765 0.95632 1.01554 1.02059 1.21584 0.96079 0.96243 1.02270 1.21519 0.91926 0.97177 1.03745 1.21238 0.96713 0.90389 1.01830 0.87587 1.21552 0.96779 1.00958 0.95921 1.21955 0.94764 1.03574 1.01551 1.23651 0.81352 0.92293 0.72277 1.90640 1.56276 1.47002 1.46051 1.86616 1.25377 1.32401 1.82106 1.22850 0.96929 0.78155 0.97990 1.22444 1.01136 1.00362 0.94690 1.20887 0.87599 0.91304 0.97638 1.44412 1.09968 1.69115 1.09507 1.18924 1.00365 1.25470 0.94234 0.89596 1.25343 0.96190 0.97948 0.97984 1.69808 1.04987 1.41822 1.38547 0.86961 0.78466 0.77780 0.85228 1.21325 1.23033 1.19661 1.21424 1.00652 0.90725 0.87163 1.22216 0.94142 1.00346 1.00001 0.92726 0.92670 0.92623 0.91798 0.91600 0.91091 0.90853 0.90414 0.91630 0.92435 0.92783 0.90635 0.90402 0.90925 0.92311 0.95632 0.91150 0.92670 0.95537 0.89896 0.92023 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.86 5.56 -26.73 -0.15 -1.00 16 3 C -0.11 -0.97 4.03 -26.73 -0.11 -1.08 16 4 C -0.08 -0.83 2.31 -91.77 -0.21 -1.04 16 5 H 0.11 0.93 8.12 -51.93 -0.42 0.51 16 6 C -0.11 -1.00 5.26 -26.73 -0.14 -1.14 16 7 C -0.16 -1.54 9.30 37.16 0.35 -1.19 16 8 C 0.46 6.56 7.21 36.00 0.26 6.82 16 9 O -0.51 -8.71 15.14 -18.75 -0.28 -9.00 16 10 O -0.35 -5.30 7.21 -39.25 -0.28 -5.59 16 11 C 0.09 1.64 2.41 -26.69 -0.06 1.58 16 12 C -0.15 -2.61 5.72 -26.61 -0.15 -2.76 16 13 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 14 N -0.61 -14.53 2.75 -172.33 -0.47 -15.01 16 15 C -0.26 -7.32 10.04 -15.06 -0.15 -7.47 16 16 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.02 0.71 5.27 -17.43 -0.09 0.61 16 18 N -0.91 -27.79 13.97 55.49 0.78 -27.02 16 19 Si 0.89 22.37 24.32 -169.99 -4.13 18.24 16 20 H -0.29 -6.85 6.43 56.52 0.36 -6.49 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.27 -6.81 6.83 56.52 0.39 -6.42 16 23 C 0.13 2.76 4.19 -3.71 -0.02 2.75 16 24 C -0.13 -2.31 5.74 -26.61 -0.15 -2.46 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 6.70 -51.92 -0.35 0.06 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 32 H 0.08 0.52 6.43 -51.93 -0.33 0.19 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.88 6.01 -51.93 -0.31 0.57 16 37 H 0.08 1.43 7.16 -51.93 -0.37 1.06 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 44 H 0.08 1.95 4.49 -51.93 -0.23 1.72 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -31.05 351.32 -7.71 -38.77 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.32 Total: -1.73 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.29 Total: -3.96 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.30 Total: -42.03 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.57 Total: -14.58 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.05 -7.71 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873512552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.396 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds