Wall clock time and date at job start Tue Mar 31 2020 07:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00429 * 275.00047 * 5 3 2 7 7 O 1.21283 * 119.99304 * 0.02562 * 6 5 3 8 8 C 1.50695 * 120.00578 * 180.02562 * 6 5 3 9 9 C 1.53000 * 109.47449 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47171 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46724 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00488 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99592 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00123 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99977 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47059 * 89.99754 * 15 13 11 17 17 H 1.48494 * 109.47131 * 210.00166 * 15 13 11 18 18 H 1.48497 * 109.46901 * 329.99998 * 15 13 11 19 19 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 20 20 H 1.09002 * 109.52314 * 60.12348 * 19 3 2 21 21 C 1.53178 * 109.52012 * 180.31036 * 19 3 2 22 22 C 1.53174 * 109.03562 * 176.88468 * 21 19 3 23 23 C 1.53089 * 109.16602 * 303.02276 * 22 21 19 24 24 O 1.42907 * 109.41426 * 57.60457 * 23 22 21 25 25 C 1.42899 * 114.10105 * 298.84625 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97001 * 120.00176 * 95.00254 * 5 3 2 32 32 H 1.08995 * 109.47428 * 300.00429 * 8 6 5 33 33 H 1.09008 * 109.47339 * 60.00017 * 8 6 5 34 34 H 1.09002 * 109.47248 * 300.00284 * 9 8 6 35 35 H 1.08995 * 109.46598 * 60.00169 * 9 8 6 36 36 H 1.08994 * 109.47147 * 299.99988 * 10 9 8 37 37 H 1.08995 * 109.47174 * 60.00579 * 10 9 8 38 38 H 0.97009 * 120.00288 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.54720 * 296.75494 * 21 19 3 40 40 H 1.08999 * 109.54035 * 57.02140 * 21 19 3 41 41 H 1.09001 * 109.52517 * 183.11497 * 22 21 19 42 42 H 1.09002 * 109.51952 * 62.92915 * 22 21 19 43 43 H 1.09001 * 109.47803 * 297.62628 * 23 22 21 44 44 H 1.09001 * 109.49501 * 177.59716 * 23 22 21 45 45 H 1.09001 * 109.47527 * 301.17313 * 25 24 23 46 46 H 1.08995 * 109.48215 * 181.14473 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 8 -0.3396 2.6319 0.4343 8 6 0.0366 3.3387 2.6543 9 6 -1.3822 3.8955 2.5206 10 6 -1.7870 4.5795 3.8279 11 6 -3.1848 5.1272 3.6963 12 1 -3.7300 4.9999 2.7728 13 6 -3.7675 5.7911 4.7550 14 7 -3.1034 5.9466 5.8794 15 14 -5.5004 6.4695 4.5922 16 1 -6.4782 5.4382 5.0229 17 1 -5.6426 7.6746 5.4481 18 1 -5.7578 6.8350 3.1761 19 6 3.5649 1.4444 -0.1257 20 1 3.8541 0.9591 -1.0579 21 6 4.0774 2.8878 -0.1180 22 6 5.6083 2.8747 -0.1657 23 6 6.1411 2.0627 1.0177 24 8 5.6017 0.7402 0.9675 25 6 4.1765 0.6875 1.0561 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.2719 2.1232 1.9977 32 1 0.0680 2.6148 3.4685 33 1 0.7280 4.1543 2.8665 34 1 -1.4132 4.6196 1.7064 35 1 -2.0738 3.0802 2.3082 36 1 -1.7562 3.8550 4.6417 37 1 -1.0955 5.3946 4.0407 38 1 -3.5133 6.4140 6.6242 39 1 3.6899 3.4170 -0.9886 40 1 3.7452 3.3878 0.7918 41 1 5.9835 3.8963 -0.1048 42 1 5.9397 2.4190 -1.0988 43 1 5.8433 2.5415 1.9505 44 1 7.2287 2.0139 0.9651 45 1 3.8531 1.1484 1.9895 46 1 3.8489 -0.3517 1.0311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882463525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:58 Heat of formation + Delta-G solvation = -121.709968 kcal Electronic energy + Delta-G solvation = -23008.837301 eV Core-core repulsion = 19704.006783 eV Total energy + Delta-G solvation = -3304.830517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55203 -39.13451 -36.41877 -34.16294 -33.52991 -32.54502 -31.77383 -31.21801 -27.96193 -26.29383 -25.43955 -23.82930 -23.15165 -21.14888 -20.91140 -19.81989 -19.74486 -17.03712 -16.79960 -16.35860 -16.00938 -15.84027 -15.59420 -14.85056 -14.65636 -14.41262 -14.29613 -13.88087 -13.61366 -13.30888 -12.97989 -12.87014 -12.41793 -12.25626 -11.93406 -11.80115 -11.66954 -11.45873 -11.40986 -11.27107 -10.93010 -10.79375 -10.68111 -10.59599 -10.56673 -10.51288 -9.75193 -9.66867 -9.62365 -9.25032 -9.00533 -8.91795 -8.31635 -5.97298 -3.98636 2.95350 3.29796 3.34974 3.40782 3.45716 3.51962 4.28688 4.36101 4.45947 4.49683 4.58835 4.77286 4.87534 4.98237 5.04319 5.13550 5.19365 5.27733 5.35764 5.38808 5.40518 5.49431 5.57908 5.63800 5.70136 5.71316 5.74556 5.76107 5.88973 5.96575 5.97718 6.13251 6.27807 6.47547 6.56902 6.73718 6.84040 6.94268 7.17324 7.61409 7.71768 7.84423 8.03501 8.47209 8.49960 9.08539 9.65312 11.14189 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025155 B = 0.003072 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.852382 B = 9113.690234 C = 9722.917159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.151 3.849 4 H 0.090 0.910 5 N -0.735 5.735 6 C 0.513 3.487 7 O -0.530 6.530 8 C -0.140 4.140 9 C -0.093 4.093 10 C 0.020 3.980 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.129 4.129 20 H 0.091 0.909 21 C -0.119 4.119 22 C -0.156 4.156 23 C 0.058 3.942 24 O -0.382 6.382 25 C 0.063 3.937 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.590 -10.691 -10.813 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.046 3.954 4 H 0.108 0.892 5 N -0.390 5.390 6 C 0.301 3.699 7 O -0.406 6.406 8 C -0.180 4.180 9 C -0.132 4.132 10 C -0.017 4.017 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.148 4.148 20 H 0.109 0.891 21 C -0.156 4.156 22 C -0.194 4.194 23 C -0.019 4.019 24 O -0.300 6.300 25 C -0.013 4.013 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.110 -10.788 -11.344 24.703 hybrid contribution -0.767 0.694 0.417 1.115 sum 18.342 -10.095 -10.926 23.616 Atomic orbital electron populations 1.21808 0.94484 1.00495 1.03546 1.22006 0.97496 0.95941 1.01882 1.20935 0.92429 0.93548 0.88487 0.89164 1.46276 1.17399 1.59137 1.16154 1.21168 0.80662 0.77388 0.90666 1.90684 1.50836 1.58220 1.40870 1.21854 1.01587 1.00572 0.93993 1.21426 0.91137 0.99703 1.00886 1.19129 0.96227 0.95217 0.91112 1.21274 0.99984 1.35217 0.99105 0.92596 1.25021 0.97847 0.96269 0.95385 1.69962 1.37332 1.42907 1.03556 0.86597 0.84906 0.78503 0.78049 1.20674 1.21268 1.19836 1.22108 0.94569 0.97285 1.00852 0.89056 1.21640 0.94930 0.95829 1.03217 1.22196 0.96310 1.01010 0.99836 1.22611 0.98709 0.83407 0.97187 1.87949 1.20353 1.27236 1.94497 1.22709 0.80758 1.01403 0.96472 0.93766 0.92192 0.91983 0.91868 0.91411 0.76989 0.89538 0.89583 0.92752 0.92741 0.96666 0.96669 0.93082 0.91174 0.91269 0.90749 0.91095 0.93033 0.88954 0.93171 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.51 37.16 0.32 -1.50 16 2 C -0.13 -1.29 5.11 -26.73 -0.14 -1.43 16 3 C 0.15 1.49 2.01 -67.93 -0.14 1.35 16 4 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 5 N -0.74 -7.99 4.21 -53.81 -0.23 -8.22 16 6 C 0.51 7.73 6.40 -10.99 -0.07 7.66 16 7 O -0.53 -9.82 13.12 5.56 0.07 -9.75 16 8 C -0.14 -2.26 5.70 -27.89 -0.16 -2.42 16 9 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.13 -1.02 2.24 -90.48 -0.20 -1.22 16 20 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.12 -0.94 5.19 -26.55 -0.14 -1.08 16 22 C -0.16 -1.07 6.14 -26.60 -0.16 -1.23 16 23 C 0.06 0.42 6.84 37.20 0.25 0.67 16 24 O -0.38 -3.53 10.77 -35.23 -0.38 -3.91 16 25 C 0.06 0.50 5.57 37.20 0.21 0.70 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.82 7.85 -51.93 -0.41 0.42 16 28 H 0.06 0.92 5.64 -51.93 -0.29 0.62 16 29 H 0.06 0.55 6.77 -51.93 -0.35 0.20 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.40 3.46 6.61 -40.82 -0.27 3.19 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.58 7.35 -51.93 -0.38 0.20 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.37 6.43 -51.93 -0.33 0.03 16 46 H 0.10 0.72 6.69 -51.93 -0.35 0.37 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -32.58 354.82 -8.60 -41.18 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.23 Total: -1.26 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.90 Total: -14.03 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.51 Total: -34.62 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.31 Total: -13.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.58 -8.60 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882463525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.533 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds