Wall clock time and date at job start Tue Mar 31 2020 07:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00429 * 275.00047 * 5 3 2 7 7 O 1.21283 * 119.99304 * 0.02562 * 6 5 3 8 8 C 1.50695 * 120.00578 * 180.02562 * 6 5 3 9 9 C 1.53000 * 109.47449 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47171 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46724 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00488 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99592 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00123 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99977 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47059 * 89.99754 * 15 13 11 17 17 H 1.48494 * 109.47131 * 210.00166 * 15 13 11 18 18 H 1.48497 * 109.46901 * 329.99998 * 15 13 11 19 19 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 20 20 H 1.09002 * 109.52314 * 60.12348 * 19 3 2 21 21 C 1.53178 * 109.52012 * 180.31036 * 19 3 2 22 22 C 1.53174 * 109.03562 * 176.88468 * 21 19 3 23 23 C 1.53089 * 109.16602 * 303.02276 * 22 21 19 24 24 O 1.42907 * 109.41426 * 57.60457 * 23 22 21 25 25 C 1.42899 * 114.10105 * 298.84625 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97001 * 120.00176 * 95.00254 * 5 3 2 32 32 H 1.08995 * 109.47428 * 300.00429 * 8 6 5 33 33 H 1.09008 * 109.47339 * 60.00017 * 8 6 5 34 34 H 1.09002 * 109.47248 * 300.00284 * 9 8 6 35 35 H 1.08995 * 109.46598 * 60.00169 * 9 8 6 36 36 H 1.08994 * 109.47147 * 299.99988 * 10 9 8 37 37 H 1.08995 * 109.47174 * 60.00579 * 10 9 8 38 38 H 0.97009 * 120.00288 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.54720 * 296.75494 * 21 19 3 40 40 H 1.08999 * 109.54035 * 57.02140 * 21 19 3 41 41 H 1.09001 * 109.52517 * 183.11497 * 22 21 19 42 42 H 1.09002 * 109.51952 * 62.92915 * 22 21 19 43 43 H 1.09001 * 109.47803 * 297.62628 * 23 22 21 44 44 H 1.09001 * 109.49501 * 177.59716 * 23 22 21 45 45 H 1.09001 * 109.47527 * 301.17313 * 25 24 23 46 46 H 1.08995 * 109.48215 * 181.14473 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 8 -0.3396 2.6319 0.4343 8 6 0.0366 3.3387 2.6543 9 6 -1.3822 3.8955 2.5206 10 6 -1.7870 4.5795 3.8279 11 6 -3.1848 5.1272 3.6963 12 1 -3.7300 4.9999 2.7728 13 6 -3.7675 5.7911 4.7550 14 7 -3.1034 5.9466 5.8794 15 14 -5.5004 6.4695 4.5922 16 1 -6.4782 5.4382 5.0229 17 1 -5.6426 7.6746 5.4481 18 1 -5.7578 6.8350 3.1761 19 6 3.5649 1.4444 -0.1257 20 1 3.8541 0.9591 -1.0579 21 6 4.0774 2.8878 -0.1180 22 6 5.6083 2.8747 -0.1657 23 6 6.1411 2.0627 1.0177 24 8 5.6017 0.7402 0.9675 25 6 4.1765 0.6875 1.0561 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.2719 2.1232 1.9977 32 1 0.0680 2.6148 3.4685 33 1 0.7280 4.1543 2.8665 34 1 -1.4132 4.6196 1.7064 35 1 -2.0738 3.0802 2.3082 36 1 -1.7562 3.8550 4.6417 37 1 -1.0955 5.3946 4.0407 38 1 -3.5133 6.4140 6.6242 39 1 3.6899 3.4170 -0.9886 40 1 3.7452 3.3878 0.7918 41 1 5.9835 3.8963 -0.1048 42 1 5.9397 2.4190 -1.0988 43 1 5.8433 2.5415 1.9505 44 1 7.2287 2.0139 0.9651 45 1 3.8531 1.1484 1.9895 46 1 3.8489 -0.3517 1.0311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882463525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:57 Heat of formation + Delta-G solvation = -141.955101 kcal Electronic energy + Delta-G solvation = -23009.715196 eV Core-core repulsion = 19704.006783 eV Total energy + Delta-G solvation = -3305.708412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45519 -40.05349 -37.37144 -36.05253 -34.20661 -34.10949 -33.25283 -31.91566 -29.70836 -27.27096 -26.08579 -25.63245 -23.85478 -22.63393 -21.71065 -21.28069 -20.58258 -18.62269 -17.89757 -17.54411 -16.99515 -16.81049 -16.57163 -16.47135 -15.61331 -15.49228 -15.31675 -14.98279 -14.59807 -14.31954 -14.13860 -14.07926 -13.74579 -13.58659 -13.32675 -13.03103 -12.70540 -12.59403 -12.50658 -12.40606 -12.38605 -12.14764 -12.06494 -11.78172 -11.53929 -11.44202 -11.39023 -11.25729 -11.17045 -10.64290 -10.54763 -10.37590 -9.93724 -8.20674 -6.30583 1.39077 1.40095 1.51653 1.74569 2.25840 2.41884 2.94245 3.12274 3.58511 3.70613 3.81402 3.94348 4.02375 4.15788 4.20486 4.23862 4.24752 4.28506 4.36106 4.54392 4.57270 4.69885 4.74309 4.81426 4.85116 4.88386 4.97385 4.99253 5.01346 5.07143 5.10089 5.12141 5.18974 5.20118 5.24371 5.36410 5.47384 5.53614 5.62649 5.75829 5.87072 6.26350 6.27374 6.60453 6.85033 7.35894 7.38469 8.90816 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025155 B = 0.003072 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.852382 B = 9113.690234 C = 9722.917159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.154 3.846 4 H 0.069 0.931 5 N -0.714 5.714 6 C 0.518 3.482 7 O -0.570 6.570 8 C -0.133 4.133 9 C -0.080 4.080 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.268 1.268 19 C -0.117 4.117 20 H 0.098 0.902 21 C -0.121 4.121 22 C -0.151 4.151 23 C 0.053 3.947 24 O -0.398 6.398 25 C 0.062 3.938 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.409 0.591 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 -11.281 -10.971 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.049 3.951 4 H 0.087 0.913 5 N -0.369 5.369 6 C 0.306 3.694 7 O -0.449 6.449 8 C -0.173 4.173 9 C -0.118 4.118 10 C -0.011 4.011 11 C -0.585 4.585 12 H 0.069 0.931 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.193 1.193 19 C -0.136 4.136 20 H 0.116 0.884 21 C -0.159 4.159 22 C -0.188 4.188 23 C -0.024 4.024 24 O -0.317 6.317 25 C -0.015 4.015 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.074 0.926 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.283 -11.395 -11.493 25.949 hybrid contribution -1.078 0.871 0.470 1.464 sum 19.205 -10.524 -11.023 24.517 Atomic orbital electron populations 1.21754 0.96681 1.00441 1.01248 1.21994 0.95304 0.95839 1.03651 1.20970 0.93801 0.93382 0.86924 0.91294 1.46044 1.16048 1.57641 1.17121 1.20847 0.81537 0.77460 0.89584 1.90681 1.52306 1.59976 1.41912 1.21685 0.98525 1.01662 0.95438 1.21125 0.94320 0.98541 0.97792 1.19018 0.94866 0.94469 0.92764 1.21694 1.01591 1.36028 0.99221 0.93113 1.25904 1.02273 0.96378 0.94928 1.70064 1.39219 1.43397 1.04257 0.85510 0.79538 0.78087 0.78313 1.19720 1.20282 1.19277 1.22004 0.92597 0.97517 1.01483 0.88355 1.21656 0.95884 0.95648 1.02686 1.22159 0.95278 1.01599 0.99799 1.22758 0.99451 0.82741 0.97424 1.87934 1.20839 1.28345 1.94567 1.22771 0.80408 1.01895 0.96379 0.92643 0.94213 0.94563 0.90260 0.89408 0.75337 0.87810 0.87795 0.94181 0.94173 0.98195 0.98171 0.92662 0.91892 0.91678 0.89805 0.91073 0.92591 0.87765 0.92603 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.51 71.98 0.61 -2.91 16 2 C -0.13 -2.24 5.11 30.60 0.16 -2.09 16 3 C 0.15 2.83 2.01 45.00 0.09 2.92 16 4 H 0.07 1.63 7.58 -2.39 -0.02 1.61 16 5 N -0.71 -14.57 4.21 -442.54 -1.86 -16.43 16 6 C 0.52 15.43 6.40 87.66 0.56 15.99 16 7 O -0.57 -21.54 13.12 -3.04 -0.04 -21.58 16 8 C -0.13 -4.24 5.70 29.85 0.17 -4.07 16 9 C -0.08 -3.49 4.44 30.59 0.14 -3.35 16 10 C 0.03 1.38 4.97 29.85 0.15 1.53 16 11 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 12 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 13 C 0.00 0.18 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 15 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C -0.12 -1.61 2.24 -10.70 -0.02 -1.63 16 20 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.12 -1.72 5.19 30.71 0.16 -1.56 16 22 C -0.15 -1.76 6.14 30.68 0.19 -1.57 16 23 C 0.05 0.64 6.84 72.01 0.49 1.13 16 24 O -0.40 -6.39 10.77 -148.98 -1.60 -8.00 16 25 C 0.06 0.81 5.57 72.01 0.40 1.21 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 28 H 0.04 1.07 5.64 -2.38 -0.01 1.05 16 29 H 0.08 1.15 6.77 -2.39 -0.02 1.14 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.41 6.24 6.61 -92.71 -0.61 5.62 16 32 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 34 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 35 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.97 7.35 -2.39 -0.02 0.95 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 46 H 0.11 1.22 6.69 -2.39 -0.02 1.21 16 Total: -1.00 -71.08 354.82 2.92 -68.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.33 Total: 12.62 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.79 Total: -25.87 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.58 Total: -72.70 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.64 Total: -29.58 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.08 2.92 -68.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882463525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.791 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds