Wall clock time and date at job start Tue Mar 31 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46802 * 2 1 4 4 H 1.09005 * 109.46741 * 304.27649 * 3 2 1 5 5 C 1.50704 * 109.46864 * 184.27829 * 3 2 1 6 6 H 1.07995 * 119.99882 * 239.99848 * 5 3 2 7 7 C 1.37875 * 119.99755 * 60.00344 * 5 3 2 8 8 N 1.31516 * 120.00439 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99872 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47086 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47221 * 119.99591 * 9 7 5 12 12 H 1.48495 * 109.47242 * 239.99772 * 9 7 5 13 13 N 1.46899 * 109.47184 * 64.27958 * 3 2 1 14 14 C 1.46897 * 110.99720 * 205.84866 * 13 3 2 15 15 C 1.53007 * 109.46873 * 174.81720 * 14 13 3 16 16 H 1.09002 * 109.46874 * 55.00414 * 15 14 13 17 17 C 1.52999 * 109.47223 * 295.00035 * 15 14 13 18 18 C 1.52998 * 109.47029 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47154 * 59.99870 * 18 17 15 20 20 C 1.53001 * 109.46942 * 299.99787 * 19 18 17 21 21 C 1.52994 * 109.47103 * 174.99619 * 15 14 13 22 22 H 1.09003 * 109.47429 * 300.00603 * 21 15 14 23 23 C 1.50699 * 109.47132 * 60.00041 * 21 15 14 24 24 O 1.20829 * 120.00110 * 0.02562 * 23 21 15 25 25 O 1.34231 * 120.00317 * 180.27454 * 23 21 15 26 26 C 1.45203 * 117.00117 * 179.73109 * 25 23 21 27 27 H 1.09003 * 109.46947 * 174.87863 * 1 2 3 28 28 H 1.09002 * 109.47269 * 294.87733 * 1 2 3 29 29 H 1.09002 * 109.47241 * 54.88019 * 1 2 3 30 30 H 1.08994 * 109.47155 * 240.00285 * 2 1 3 31 31 H 1.09001 * 109.47345 * 120.00048 * 2 1 3 32 32 H 0.96997 * 120.00215 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00032 * 81.89395 * 13 3 2 34 34 H 1.08994 * 109.47634 * 54.81795 * 14 13 3 35 35 H 1.09004 * 109.47053 * 294.81344 * 14 13 3 36 36 H 1.09002 * 109.47073 * 60.00012 * 17 15 14 37 37 H 1.08998 * 109.46796 * 299.99854 * 17 15 14 38 38 H 1.09003 * 109.47382 * 300.00014 * 18 17 15 39 39 H 1.08995 * 109.46948 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47191 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.47319 * 59.99794 * 19 18 17 42 42 H 1.09003 * 109.47373 * 299.99721 * 20 19 18 43 43 H 1.09002 * 109.46756 * 179.97438 * 20 19 18 44 44 H 1.09001 * 109.47016 * 180.02562 * 26 25 23 45 45 H 1.08998 * 109.46550 * 299.99671 * 26 25 23 46 46 H 1.08994 * 109.47687 * 59.99566 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6153 1.9780 -0.8492 5 6 3.5432 1.4439 -0.1060 6 1 4.1392 1.8918 0.6754 7 6 4.1576 0.8734 -1.2006 8 7 3.4318 0.3277 -2.1519 9 14 6.0209 0.8757 -1.3323 10 1 6.6006 1.5468 -0.1411 11 1 6.5140 -0.5233 -1.4018 12 1 6.4296 1.6060 -2.5590 13 7 1.6365 2.1046 1.2477 14 6 1.5401 3.5589 1.0647 15 6 0.9950 4.1988 2.3431 16 1 1.6174 3.9075 3.1892 17 6 -0.4405 3.7245 2.5788 18 6 -0.9858 4.3649 3.8568 19 6 -0.9692 5.8879 3.7113 20 6 0.4662 6.3621 3.4757 21 6 1.0116 5.7218 2.1983 22 1 2.0343 6.0597 2.0303 23 6 0.1512 6.1246 1.0285 24 8 -0.4175 5.2802 0.3778 25 8 0.0204 7.4211 0.7064 26 6 -0.8192 7.7352 -0.4358 27 1 -0.3633 -1.0236 -0.0917 28 1 -0.3634 0.4323 0.9323 29 1 -0.3634 0.5912 -0.8406 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8641 -0.0740 -2.9218 33 1 2.2694 1.8759 1.9995 34 1 0.8686 3.7770 0.2344 35 1 2.5287 3.9642 0.8486 36 1 -0.4523 2.6395 2.6820 37 1 -1.0628 4.0159 1.7327 38 1 -0.3635 4.0741 4.7032 39 1 -2.0082 4.0267 4.0250 40 1 -1.3573 6.3442 4.6220 41 1 -1.5915 6.1789 2.8651 42 1 1.0886 6.0712 4.3220 43 1 0.4779 7.4471 3.3716 44 1 -0.8385 8.8145 -0.5867 45 1 -0.4174 7.2514 -1.3260 46 1 -1.8316 7.3755 -0.2525 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930692814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:30 Heat of formation + Delta-G solvation = -111.980333 kcal Electronic energy + Delta-G solvation = -24080.735773 eV Core-core repulsion = 20776.327164 eV Total energy + Delta-G solvation = -3304.408609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95023 -38.21114 -36.09060 -35.91584 -32.91230 -31.48713 -31.20914 -29.75547 -27.75106 -26.40604 -24.27035 -23.45057 -22.46819 -21.26270 -20.63429 -19.73683 -19.14292 -17.20958 -16.59290 -16.44936 -15.96157 -15.25045 -14.77055 -14.28532 -14.20045 -13.86610 -13.62943 -13.43659 -13.09852 -12.74819 -12.64178 -12.24336 -12.11094 -11.93756 -11.85581 -11.51972 -11.42701 -11.16803 -11.07204 -10.88524 -10.87033 -10.73935 -10.62811 -10.34070 -10.13802 -9.96237 -9.87376 -9.51257 -9.47662 -9.26563 -8.94964 -8.32760 -7.10747 -5.93936 -4.06993 2.38916 2.81533 3.27834 3.36194 3.39083 4.42718 4.61763 4.72644 4.74578 5.06677 5.09343 5.17218 5.22300 5.30416 5.34715 5.48653 5.50040 5.55729 5.61602 5.71657 5.80184 5.93862 6.01103 6.10075 6.18731 6.26116 6.36002 6.44488 6.48795 6.59526 6.67192 6.71623 6.80956 6.90154 7.05041 7.25463 7.28197 7.53976 7.68648 7.84439 7.96276 8.17885 8.24722 8.42979 8.78458 9.08001 9.60275 11.05749 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.004813 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.822901 B = 5816.523549 C = 6255.143091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.060 3.940 15 C -0.066 4.066 16 H 0.076 0.924 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.075 4.075 22 H 0.104 0.896 23 C 0.463 3.537 24 O -0.484 6.484 25 O -0.365 6.365 26 C 0.035 3.965 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.322 0.678 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 13.362 9.597 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.311 5.311 14 C -0.070 4.070 15 C -0.085 4.085 16 H 0.094 0.906 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.095 4.095 22 H 0.122 0.878 23 C 0.306 3.694 24 O -0.370 6.370 25 O -0.282 6.282 26 C -0.059 4.059 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.937 12.913 9.070 18.135 hybrid contribution 2.033 0.260 -0.486 2.106 sum -6.904 13.173 8.584 17.172 Atomic orbital electron populations 1.21675 0.98991 0.98038 1.00478 1.21480 0.92084 0.99296 1.01470 1.19122 0.92455 0.91092 0.86546 0.95155 1.21925 0.92871 1.37642 1.05672 0.92940 1.24939 0.97824 0.95134 0.95719 1.69898 1.34673 1.38231 1.09559 0.86626 0.86309 0.77699 0.77854 1.19985 1.20974 1.21123 1.60835 1.54738 1.06095 1.09471 1.22095 0.98401 0.90063 0.96438 1.21068 0.98253 0.89561 0.99588 0.90569 1.21706 0.95251 1.01432 0.97101 1.21621 1.00790 0.94427 0.99127 1.21590 0.96157 0.96938 1.01273 1.21517 0.96982 1.00125 0.95955 1.21212 0.98770 0.98451 0.91048 0.87768 1.23841 0.80186 0.80154 0.85235 1.90626 1.44425 1.50695 1.51224 1.86500 1.64869 1.28838 1.48023 1.23206 0.94089 1.01560 0.87062 0.95879 0.93424 0.94498 0.89365 0.95216 0.93023 0.86274 0.89748 0.96454 0.90319 0.90128 0.92242 0.92444 0.91948 0.92666 0.90415 0.91028 0.88537 0.91842 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.73 37.16 0.36 -2.55 16 2 C -0.10 -2.59 5.45 -26.73 -0.15 -2.73 16 3 C 0.22 5.50 1.98 -68.86 -0.14 5.36 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.54 -14.87 8.47 -34.44 -0.29 -15.16 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.58 11.29 55.43 0.63 -24.95 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.55 5.19 -107.94 -0.56 -15.11 16 14 C 0.06 1.17 4.53 -3.82 -0.02 1.15 16 15 C -0.07 -0.99 2.12 -90.62 -0.19 -1.18 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.12 -1.75 4.82 -26.73 -0.13 -1.88 16 18 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 19 C -0.12 -1.29 5.70 -26.73 -0.15 -1.44 16 20 C -0.11 -1.10 5.39 -26.76 -0.14 -1.25 16 21 C -0.08 -0.97 2.65 -91.80 -0.24 -1.21 16 22 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 23 C 0.46 6.79 5.46 36.01 0.20 6.98 16 24 O -0.48 -8.51 11.12 -18.75 -0.21 -8.72 16 25 O -0.37 -4.71 10.47 -39.26 -0.41 -5.12 16 26 C 0.03 0.36 10.56 101.05 1.07 1.42 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.32 6.71 8.45 -39.29 -0.33 6.38 16 34 H 0.08 1.84 5.43 -51.93 -0.28 1.56 16 35 H 0.02 0.36 8.11 -51.93 -0.42 -0.06 16 36 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 37 H 0.08 1.37 5.52 -51.93 -0.29 1.08 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 46 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -29.82 352.87 -8.59 -38.41 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.25 Total: 6.10 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.08 Total: -12.34 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.07 Total: -40.06 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.62 Total: -13.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.82 -8.59 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.570 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds