Wall clock time and date at job start Tue Mar 31 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46682 * 2 1 4 4 H 1.08999 * 109.47197 * 305.65790 * 3 2 1 5 5 C 1.50705 * 109.46646 * 185.66206 * 3 2 1 6 6 H 1.08000 * 120.00202 * 239.99722 * 5 3 2 7 7 C 1.37887 * 119.99993 * 59.99949 * 5 3 2 8 8 N 1.31516 * 119.99702 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47291 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47122 * 119.99664 * 9 7 5 12 12 H 1.48501 * 109.47265 * 239.99885 * 9 7 5 13 13 N 1.46895 * 109.47547 * 65.66557 * 3 2 1 14 14 C 1.46900 * 110.99788 * 203.41388 * 13 3 2 15 15 C 1.52995 * 109.47214 * 185.59826 * 14 13 3 16 16 H 1.09001 * 109.46982 * 55.00203 * 15 14 13 17 17 C 1.53002 * 109.47602 * 295.00336 * 15 14 13 18 18 C 1.52996 * 109.47574 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47069 * 60.00093 * 18 17 15 20 20 C 1.53001 * 109.47051 * 300.00022 * 19 18 17 21 21 C 1.52995 * 109.47495 * 174.99999 * 15 14 13 22 22 H 1.08997 * 109.47183 * 60.00475 * 21 15 14 23 23 C 1.50699 * 109.47265 * 300.00280 * 21 15 14 24 24 O 1.20825 * 119.99970 * 0.02562 * 23 21 15 25 25 O 1.34229 * 120.00049 * 179.97438 * 23 21 15 26 26 C 1.45202 * 116.99775 * 180.02562 * 25 23 21 27 27 H 1.09008 * 109.47193 * 176.71337 * 1 2 3 28 28 H 1.08994 * 109.47594 * 296.70961 * 1 2 3 29 29 H 1.08993 * 109.47108 * 56.71992 * 1 2 3 30 30 H 1.08999 * 109.47380 * 239.99338 * 2 1 3 31 31 H 1.09003 * 109.46829 * 119.99234 * 2 1 3 32 32 H 0.97000 * 119.99655 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99574 * 327.36389 * 13 3 2 34 34 H 1.09008 * 109.46937 * 65.60335 * 14 13 3 35 35 H 1.09000 * 109.47341 * 305.60039 * 14 13 3 36 36 H 1.09005 * 109.47100 * 59.99251 * 17 15 14 37 37 H 1.09001 * 109.46844 * 299.99952 * 17 15 14 38 38 H 1.09001 * 109.47319 * 300.00057 * 18 17 15 39 39 H 1.09001 * 109.47336 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.47077 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47079 * 59.99817 * 19 18 17 42 42 H 1.08997 * 109.47133 * 300.00333 * 20 19 18 43 43 H 1.09000 * 109.47442 * 179.97438 * 20 19 18 44 44 H 1.09007 * 109.47237 * 60.00373 * 26 25 23 45 45 H 1.09001 * 109.47313 * 179.97438 * 26 25 23 46 46 H 1.08999 * 109.47003 * 300.00029 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9847 -0.8350 5 6 3.5404 1.4448 -0.1402 6 1 4.1542 1.8864 0.6310 7 6 4.1297 0.8831 -1.2531 8 7 3.3824 0.3449 -2.1919 9 14 5.9895 0.8866 -1.4271 10 1 6.5963 1.5471 -0.2435 11 1 6.4807 -0.5118 -1.5189 12 1 6.3702 1.6268 -2.6570 13 7 1.6651 2.0945 1.2619 14 6 1.6210 3.5546 1.1072 15 6 1.3656 4.2042 2.4686 16 1 2.1187 3.8651 3.1800 17 6 -0.0246 3.8082 2.9701 18 6 -0.2797 4.4573 4.3318 19 6 -0.2017 5.9791 4.1940 20 6 1.1885 6.3752 3.6926 21 6 1.4435 5.7260 2.3303 22 1 0.6905 6.0652 1.6190 23 6 2.8128 6.1161 1.8365 24 8 3.6412 5.2644 1.6172 25 8 3.1117 7.4097 1.6394 26 6 4.4494 7.7118 1.1622 27 1 -0.3634 -1.0260 -0.0589 28 1 -0.3634 0.4619 0.9179 29 1 -0.3633 0.5639 -0.8591 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.7970 -0.0505 -2.9746 33 1 0.7844 1.7404 1.6041 34 1 0.8184 3.8232 0.4202 35 1 2.5728 3.9068 0.7094 36 1 -0.0801 2.7240 3.0686 37 1 -0.7776 4.1474 2.2587 38 1 0.4734 4.1178 5.0430 39 1 -1.2703 4.1755 4.6888 40 1 -0.3830 6.4416 5.1642 41 1 -0.9548 6.3186 3.4828 42 1 1.9415 6.0357 4.4037 43 1 1.2440 7.4593 3.5940 44 1 4.6111 7.2241 0.2008 45 1 4.5586 8.7900 1.0450 46 1 5.1827 7.3482 1.8820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930692817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:33 Heat of formation + Delta-G solvation = -111.742644 kcal Electronic energy + Delta-G solvation = -23913.340603 eV Core-core repulsion = 20608.942301 eV Total energy + Delta-G solvation = -3304.398302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66082 -38.41380 -36.21946 -36.01543 -32.89679 -31.56747 -31.33524 -29.67627 -27.67586 -26.47737 -24.49092 -23.54969 -22.59252 -20.84779 -20.63182 -19.64904 -19.28076 -17.35117 -16.58726 -16.18382 -16.12843 -15.07591 -14.74649 -14.54741 -14.15974 -13.91631 -13.81944 -13.48122 -13.20392 -12.73969 -12.51702 -12.50636 -12.28571 -11.99584 -11.80522 -11.70056 -11.29064 -11.15923 -11.05152 -10.89227 -10.78388 -10.65341 -10.51443 -10.44610 -10.36266 -10.16716 -9.83941 -9.62729 -9.52785 -9.30612 -8.91819 -8.23513 -7.06072 -5.85608 -3.87579 2.45226 2.85622 3.38706 3.45864 3.54502 4.55174 4.60933 4.66367 4.71838 5.08590 5.16451 5.17978 5.23748 5.26880 5.35962 5.42944 5.44877 5.54398 5.58076 5.60594 5.71885 5.86444 6.00088 6.02520 6.06537 6.15287 6.21187 6.22361 6.26866 6.36843 6.44307 6.48390 6.51477 6.76723 6.91284 7.02185 7.17651 7.32336 7.61633 7.88616 8.00891 8.07404 8.44739 8.51836 8.92265 9.22629 9.76717 11.20140 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.005922 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.081504 B = 4727.124276 C = 6396.193082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.219 3.781 4 H -0.003 1.003 5 C -0.482 4.482 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.681 5.681 14 C 0.061 3.939 15 C -0.069 4.069 16 H 0.086 0.914 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.071 4.071 22 H 0.103 0.897 23 C 0.452 3.548 24 O -0.474 6.474 25 O -0.366 6.366 26 C 0.034 3.966 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.257 0.743 33 H 0.311 0.689 34 H 0.004 0.996 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 13.378 10.573 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.521 4.521 6 H 0.082 0.918 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.313 5.313 14 C -0.068 4.068 15 C -0.088 4.088 16 H 0.104 0.896 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.091 4.091 22 H 0.121 0.879 23 C 0.294 3.706 24 O -0.359 6.359 25 O -0.284 6.284 26 C -0.059 4.059 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.023 0.977 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.052 13.024 10.560 17.826 hybrid contribution 0.398 0.070 -0.930 1.014 sum -5.654 13.094 9.630 17.209 Atomic orbital electron populations 1.21874 0.99726 0.99524 0.99501 1.21751 0.91120 1.00446 1.03002 1.19119 0.95504 0.89845 0.84340 0.98513 1.21300 0.91357 1.35418 1.04058 0.91828 1.24950 0.97934 0.95915 0.95951 1.69892 1.34398 1.40178 1.09665 0.86521 0.86193 0.77406 0.77811 1.19737 1.21249 1.21392 1.60659 1.34396 1.02677 1.33549 1.22156 1.01504 0.90194 0.92995 1.21110 0.97716 0.90003 0.99964 0.89580 1.21598 0.96267 1.01116 0.96140 1.21575 1.01485 0.94913 0.97889 1.21527 0.96358 0.96457 1.01001 1.21518 0.98181 1.00343 0.94566 1.21147 0.90943 0.98210 0.98759 0.87871 1.23902 0.91157 0.80386 0.75196 1.90772 1.49564 1.50096 1.45423 1.86476 1.34891 1.28981 1.78026 1.23216 0.81102 1.01562 1.00064 0.94478 0.94664 0.93990 0.88303 0.94085 0.93361 0.87113 0.97749 0.88454 0.90836 0.92290 0.91786 0.92088 0.91777 0.91773 0.91403 0.90896 0.91758 0.88552 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.68 37.16 0.36 -2.60 16 2 C -0.12 -3.04 5.37 -26.73 -0.14 -3.19 16 3 C 0.22 5.71 2.02 -68.87 -0.14 5.57 16 4 H 0.00 -0.08 7.88 -51.93 -0.41 -0.49 16 5 C -0.48 -14.05 8.46 -34.43 -0.29 -14.34 16 6 H 0.06 1.94 7.81 -52.49 -0.41 1.53 16 7 C 0.05 1.50 5.29 -17.81 -0.09 1.41 16 8 N -0.90 -26.58 11.29 55.43 0.63 -25.95 16 9 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 10 H -0.27 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.68 -15.09 6.23 -107.95 -0.67 -15.76 16 14 C 0.06 1.23 4.65 -3.83 -0.02 1.21 16 15 C -0.07 -1.07 1.56 -90.62 -0.14 -1.21 16 16 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 17 C -0.11 -1.44 4.97 -26.73 -0.13 -1.57 16 18 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 19 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 20 C -0.11 -1.12 5.14 -26.70 -0.14 -1.26 16 21 C -0.07 -0.94 2.17 -91.75 -0.20 -1.14 16 22 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 23 C 0.45 7.13 6.93 36.00 0.25 7.38 16 24 O -0.47 -9.47 13.42 -18.75 -0.25 -9.72 16 25 O -0.37 -5.00 10.47 -39.26 -0.41 -5.41 16 26 C 0.03 0.39 10.56 101.05 1.07 1.46 16 27 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.03 0.62 6.56 -51.93 -0.34 0.28 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.70 5.94 -51.93 -0.31 2.40 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.31 6.16 5.03 -39.29 -0.20 5.96 16 34 H 0.00 0.09 8.14 -51.92 -0.42 -0.34 16 35 H 0.10 2.30 5.12 -51.93 -0.27 2.03 16 36 H 0.07 0.99 6.81 -51.93 -0.35 0.64 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 44 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -31.92 354.58 -8.50 -40.42 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.18 Total: 4.30 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 0.06 Total: -10.86 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.05 Total: -41.71 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.66 Total: -15.14 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.92 -8.50 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.320 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds