Wall clock time and date at job start Tue Mar 31 2020 07:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 H 1.08995 * 109.47575 * 177.53880 * 3 2 1 5 5 C 1.50708 * 109.46716 * 57.53698 * 3 2 1 6 6 H 1.07994 * 119.99807 * 239.99520 * 5 3 2 7 7 C 1.37878 * 119.99769 * 60.00524 * 5 3 2 8 8 N 1.31518 * 119.99951 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46986 * 60.00169 * 9 7 5 11 11 H 1.48498 * 109.46856 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47316 * 299.99857 * 9 7 5 13 13 N 1.46901 * 109.47202 * 297.54311 * 3 2 1 14 14 C 1.46898 * 110.99668 * 274.37509 * 13 3 2 15 15 C 1.53000 * 109.47230 * 154.70573 * 14 13 3 16 16 C 1.52995 * 109.47187 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47452 * 300.00477 * 16 15 14 18 18 C 1.53007 * 109.46948 * 299.99470 * 17 16 15 19 19 C 1.50702 * 109.47338 * 179.97438 * 17 16 15 20 20 O 1.20828 * 119.99489 * 0.02562 * 19 17 16 21 21 O 1.34224 * 120.00178 * 179.97438 * 19 17 16 22 22 C 1.45203 * 117.00133 * 180.02562 * 21 19 17 23 23 C 1.52994 * 109.47263 * 59.99912 * 17 16 15 24 24 C 1.52998 * 109.46878 * 299.99717 * 23 17 16 25 25 H 1.09002 * 109.46769 * 294.53245 * 1 2 3 26 26 H 1.09003 * 109.47202 * 54.52865 * 1 2 3 27 27 H 1.08996 * 109.47033 * 174.53294 * 1 2 3 28 28 H 1.08995 * 109.46827 * 240.00096 * 2 1 3 29 29 H 1.08999 * 109.47006 * 120.00052 * 2 1 3 30 30 H 0.96995 * 119.99636 * 180.02562 * 8 7 5 31 31 H 1.00894 * 110.99962 * 150.42016 * 13 3 2 32 32 H 1.09000 * 109.47527 * 34.70554 * 14 13 3 33 33 H 1.09002 * 109.46794 * 60.00117 * 15 14 13 34 34 H 1.08997 * 109.47056 * 299.99800 * 15 14 13 35 35 H 1.09007 * 109.47228 * 179.97438 * 16 15 14 36 36 H 1.09000 * 109.47054 * 60.00297 * 16 15 14 37 37 H 1.08993 * 109.47216 * 300.00272 * 18 17 16 38 38 H 1.09000 * 109.46663 * 60.00473 * 18 17 16 39 39 H 1.08998 * 109.46726 * 179.97438 * 18 17 16 40 40 H 1.08994 * 109.47326 * 180.02562 * 22 21 19 41 41 H 1.09004 * 109.46960 * 299.99801 * 22 21 19 42 42 H 1.08999 * 109.47276 * 59.99618 * 22 21 19 43 43 H 1.08995 * 109.47592 * 60.00079 * 23 17 16 44 44 H 1.09010 * 109.47149 * 180.02562 * 23 17 16 45 45 H 1.09000 * 109.47645 * 300.00218 * 24 23 17 46 46 H 1.09007 * 109.47148 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4885 2.1703 1.1989 6 1 0.8725 3.0467 1.0622 7 6 1.7705 1.7173 2.4702 8 7 2.5205 0.6497 2.6366 9 14 1.0874 2.6198 3.9563 10 1 -0.3964 2.6198 3.8963 11 1 1.5321 1.9368 5.1976 12 1 1.5828 4.0196 3.9561 13 7 1.5995 2.1177 -1.2280 14 6 2.5367 1.8678 -2.3313 15 6 1.8020 2.0075 -3.6661 16 6 2.7782 1.7478 -4.8151 17 6 3.9208 2.7634 -4.7531 18 6 3.3525 4.1787 -4.8768 19 6 4.8827 2.5073 -5.8846 20 8 4.6753 1.6052 -6.6612 21 8 5.9692 3.2818 -6.0302 22 6 6.8514 2.9776 -7.1426 23 6 4.6555 2.6237 -3.4184 24 6 3.6793 2.8835 -2.2693 25 1 -0.3633 0.4267 0.9349 26 1 -0.3634 0.5964 -0.8370 27 1 -0.3633 -1.0230 -0.0979 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7185 0.3309 3.5310 31 1 1.4789 3.1073 -1.0731 32 1 2.9413 0.8595 -2.2431 33 1 1.3975 3.0158 -3.7543 34 1 0.9879 1.2841 -3.7101 35 1 2.2547 1.8469 -5.7661 36 1 3.1832 0.7397 -4.7271 37 1 2.8291 4.2782 -5.8277 38 1 2.6570 4.3637 -4.0581 39 1 4.1665 4.9022 -4.8321 40 1 7.6879 3.6764 -7.1447 41 1 7.2288 1.9602 -7.0394 42 1 6.3002 3.0674 -8.0786 43 1 5.0604 1.6156 -3.3302 44 1 5.4693 3.3476 -3.3740 45 1 3.2744 3.8917 -2.3574 46 1 4.2028 2.7844 -1.3183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168762567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:42 Heat of formation + Delta-G solvation = -111.061311 kcal Electronic energy + Delta-G solvation = -23757.626487 eV Core-core repulsion = 20453.257730 eV Total energy + Delta-G solvation = -3304.368757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99665 -38.82192 -36.60323 -35.80585 -33.02103 -31.12454 -30.67567 -29.28914 -27.85847 -26.77751 -25.48647 -23.30798 -22.74728 -22.44706 -20.65010 -18.88784 -18.72260 -17.39947 -16.99191 -16.44809 -16.24543 -14.91069 -14.74330 -14.58889 -14.07164 -13.99391 -13.62316 -13.46185 -12.96905 -12.81051 -12.60628 -12.42095 -12.15165 -12.00958 -11.94971 -11.69898 -11.67884 -11.33083 -10.95826 -10.93948 -10.89911 -10.88727 -10.69289 -10.39188 -10.32931 -10.05129 -9.97915 -9.80280 -9.56483 -9.31898 -8.75619 -8.45068 -7.16809 -6.00149 -4.05235 2.13404 2.60874 3.31098 3.36282 3.38663 4.40458 4.48160 4.65562 4.69751 4.90253 4.97507 5.04473 5.23520 5.26690 5.31994 5.32382 5.44405 5.50475 5.66722 5.69809 5.72868 5.83484 5.96386 6.06262 6.12238 6.16073 6.23581 6.30159 6.34736 6.48158 6.57110 6.71209 6.74814 6.74986 6.91002 7.27535 7.37549 7.54236 7.66551 7.76801 7.82455 7.88288 8.29493 8.43686 8.71416 9.04812 9.59461 11.05783 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003765 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.870979 B = 7434.622463 C = 7739.792948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.087 3.913 15 C -0.105 4.105 16 C -0.097 4.097 17 C -0.047 4.047 18 C -0.144 4.144 19 C 0.470 3.530 20 O -0.509 6.509 21 O -0.356 6.356 22 C 0.034 3.966 23 C -0.102 4.102 24 C -0.146 4.146 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.083 0.917 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 5.594 -15.654 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.024 4.024 15 C -0.143 4.143 16 C -0.135 4.135 17 C -0.048 4.048 18 C -0.201 4.201 19 C 0.313 3.687 20 O -0.396 6.396 21 O -0.273 6.273 22 C -0.060 4.060 23 C -0.140 4.140 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.983 4.684 -15.919 17.325 hybrid contribution 0.662 0.824 0.900 1.388 sum 5.645 5.508 -15.018 16.963 Atomic orbital electron populations 1.21433 0.97562 0.97043 1.01537 1.21432 0.95071 0.98375 0.99167 1.19105 0.93343 0.91495 0.85119 0.98112 1.21155 1.31580 1.11917 0.90434 0.92447 1.24875 0.95122 0.95011 0.98791 1.69881 1.37554 1.23142 1.22195 0.86669 0.79485 0.79755 0.82136 1.20257 1.21418 1.20424 1.60751 1.47019 1.15791 1.07419 1.21555 0.90681 0.98133 0.91998 1.21574 0.97531 1.02210 0.92969 1.21494 0.94652 0.97834 0.99532 1.20618 0.93345 0.99085 0.91711 1.21961 1.01825 0.93264 1.03012 1.24044 0.80344 0.78811 0.85501 1.90641 1.74068 1.30823 1.44083 1.86532 1.34688 1.56520 1.49547 1.23244 0.92694 1.02294 0.87796 1.21542 0.98104 1.02444 0.91931 1.22344 0.97754 1.00578 0.97793 0.93010 0.93435 0.96993 0.97223 0.89829 0.92971 0.85272 0.91176 0.91860 0.90964 0.91454 0.91237 0.92456 0.89797 0.91581 0.88223 0.92000 0.92087 0.91627 0.91097 0.91574 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.45 37.16 0.35 -2.30 16 2 C -0.10 -2.44 5.55 -26.73 -0.15 -2.59 16 3 C 0.22 5.17 2.11 -68.86 -0.15 5.03 16 4 H 0.00 0.03 7.13 -51.93 -0.37 -0.34 16 5 C -0.51 -13.34 7.31 -34.44 -0.25 -13.60 16 6 H 0.06 1.48 7.61 -52.49 -0.40 1.08 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.80 11.34 55.43 0.63 -24.17 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.36 5.30 -100.95 -0.54 -13.89 16 14 C 0.09 1.44 2.27 -67.71 -0.15 1.29 16 15 C -0.10 -1.46 5.26 -26.73 -0.14 -1.60 16 16 C -0.10 -1.27 4.02 -26.73 -0.11 -1.37 16 17 C -0.05 -0.57 0.71 -155.66 -0.11 -0.68 16 18 C -0.14 -1.51 7.71 37.16 0.29 -1.22 16 19 C 0.47 6.21 6.55 36.01 0.24 6.45 16 20 O -0.51 -7.91 15.73 -18.75 -0.29 -8.21 16 21 O -0.36 -4.15 10.37 -39.24 -0.41 -4.56 16 22 C 0.03 0.29 10.56 101.05 1.07 1.35 16 23 C -0.10 -1.31 4.66 -26.73 -0.12 -1.43 16 24 C -0.15 -2.14 4.88 -26.73 -0.13 -2.27 16 25 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 26 H 0.05 1.02 7.52 -51.93 -0.39 0.63 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.01 0.21 7.45 -51.93 -0.39 -0.18 16 29 H 0.08 2.23 6.14 -51.93 -0.32 1.91 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.36 7.94 -39.29 -0.31 6.05 16 32 H 0.07 1.29 7.15 -51.93 -0.37 0.92 16 33 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.88 4.81 -51.93 -0.25 0.63 16 39 H 0.07 0.65 8.11 -51.93 -0.42 0.22 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.84 8.11 -51.92 -0.42 0.42 16 45 H 0.07 0.90 6.42 -51.93 -0.33 0.56 16 46 H 0.07 1.21 7.46 -51.93 -0.39 0.83 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -28.54 351.08 -7.82 -36.35 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.01 Total: 4.67 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 0.53 Total: -11.33 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.09 Total: -38.07 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.70 Total: -12.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.54 -7.82 -36.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168762567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.707 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds