Wall clock time and date at job start Tue Mar 31 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47284 * 2 1 4 4 H 1.08997 * 109.47257 * 54.48905 * 3 2 1 5 5 C 1.50705 * 109.47068 * 174.48874 * 3 2 1 6 6 H 1.08002 * 120.00336 * 120.00286 * 5 3 2 7 7 C 1.37875 * 119.99942 * 299.99600 * 5 3 2 8 8 N 1.31522 * 120.00245 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46898 * 60.00578 * 9 7 5 11 11 H 1.48498 * 109.47184 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47294 * 300.00556 * 9 7 5 13 13 N 1.46895 * 109.47491 * 294.48383 * 3 2 1 14 14 C 1.46897 * 111.00357 * 152.95248 * 13 3 2 15 15 C 1.53002 * 109.47320 * 153.64996 * 14 13 3 16 16 C 1.52994 * 109.47026 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47449 * 299.99998 * 16 15 14 18 18 C 1.53001 * 109.46927 * 300.00021 * 17 16 15 19 19 C 1.50697 * 109.47139 * 180.02562 * 17 16 15 20 20 O 1.20830 * 120.00054 * 359.97438 * 19 17 16 21 21 O 1.34225 * 119.99839 * 180.02562 * 19 17 16 22 22 C 1.45202 * 117.00061 * 179.97438 * 21 19 17 23 23 C 1.52996 * 109.46953 * 60.00297 * 17 16 15 24 24 C 1.53001 * 109.46943 * 299.99899 * 23 17 16 25 25 H 1.08999 * 109.47814 * 180.72808 * 1 2 3 26 26 H 1.09000 * 109.47272 * 300.73185 * 1 2 3 27 27 H 1.09001 * 109.46918 * 60.73199 * 1 2 3 28 28 H 1.09000 * 109.47602 * 239.99306 * 2 1 3 29 29 H 1.09004 * 109.47039 * 120.00037 * 2 1 3 30 30 H 0.96996 * 120.00038 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99379 * 29.00153 * 13 3 2 32 32 H 1.08995 * 109.46844 * 33.64980 * 14 13 3 33 33 H 1.09000 * 109.46740 * 60.00037 * 15 14 13 34 34 H 1.08994 * 109.46892 * 300.00374 * 15 14 13 35 35 H 1.09003 * 109.47212 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47356 * 60.00383 * 16 15 14 37 37 H 1.09005 * 109.47136 * 300.00131 * 18 17 16 38 38 H 1.08997 * 109.46749 * 59.99970 * 18 17 16 39 39 H 1.08998 * 109.47135 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.47349 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.47134 * 299.99781 * 22 21 19 42 42 H 1.09004 * 109.47510 * 59.99659 * 22 21 19 43 43 H 1.08995 * 109.47453 * 59.99976 * 23 17 16 44 44 H 1.08998 * 109.47122 * 180.02562 * 23 17 16 45 45 H 1.09000 * 109.47449 * 299.99962 * 24 23 17 46 46 H 1.09003 * 109.47355 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5983 1.9840 0.8365 5 6 3.5408 1.4446 0.1365 6 1 4.1527 1.8868 -0.6358 7 6 4.1328 0.8820 1.2473 8 7 3.3878 0.3430 2.1877 9 14 5.9932 0.8840 1.4162 10 1 6.4887 2.2839 1.4159 11 1 6.3753 0.2234 2.6901 12 1 6.5945 0.1458 0.2766 13 7 1.6621 2.0955 -1.2604 14 6 1.5346 3.5481 -1.0831 15 6 1.7959 4.2497 -2.4174 16 6 1.6637 5.7627 -2.2326 17 6 0.2507 6.0960 -1.7493 18 6 -0.7686 5.6177 -2.7852 19 6 0.1204 7.5863 -1.5679 20 8 1.0612 8.3078 -1.8007 21 8 -1.0405 8.1120 -1.1466 22 6 -1.0937 9.5550 -0.9937 23 6 -0.0105 5.3945 -0.4150 24 6 0.1216 3.8814 -0.5998 25 1 -0.3635 -1.0275 0.0131 26 1 -0.3634 0.5252 0.8833 27 1 -0.3633 0.5024 -0.8965 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8043 -0.0530 2.9690 31 1 0.8109 1.7004 -1.6312 32 1 2.2605 3.8891 -0.3450 33 1 1.0699 3.9086 -3.1555 34 1 2.8026 4.0126 -2.7615 35 1 1.8494 6.2625 -3.1833 36 1 2.3899 6.1034 -1.4947 37 1 -0.5824 6.1175 -3.7359 38 1 -0.6744 4.5398 -2.9168 39 1 -1.7752 5.8548 -2.4408 40 1 -2.0856 9.8476 -0.6490 41 1 -0.3475 9.8709 -0.2646 42 1 -0.8881 10.0299 -1.9530 43 1 0.7157 5.7352 0.3230 44 1 -1.0172 5.6315 -0.0709 45 1 -0.6046 3.5407 -1.3377 46 1 -0.0650 3.3816 0.3507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168765291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:47 Heat of formation + Delta-G solvation = -110.371605 kcal Electronic energy + Delta-G solvation = -23823.790052 eV Core-core repulsion = 20519.451203 eV Total energy + Delta-G solvation = -3304.338849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96390 -38.79113 -36.58682 -35.85044 -32.89442 -31.51038 -30.60412 -29.30262 -27.82641 -26.89575 -25.70072 -23.24367 -22.47336 -22.29929 -20.43377 -19.62358 -18.51051 -17.36265 -16.92546 -16.41300 -16.16033 -15.02929 -14.84063 -14.54406 -14.18961 -14.01147 -13.62949 -13.20835 -13.07173 -12.81235 -12.67732 -12.47436 -12.25155 -12.06762 -11.92547 -11.78677 -11.59447 -11.30943 -10.98797 -10.91607 -10.86411 -10.84480 -10.78703 -10.62128 -10.18357 -10.06269 -9.92605 -9.88108 -9.64532 -9.39689 -9.02944 -8.31225 -7.15450 -5.93320 -3.97104 2.16681 2.63541 3.36712 3.40619 3.44453 4.46893 4.51359 4.68426 4.72816 4.92388 4.99820 5.07208 5.24865 5.29242 5.34657 5.36791 5.46751 5.52541 5.71414 5.74268 5.74874 5.87582 5.97294 6.08850 6.14245 6.18026 6.18559 6.20202 6.27772 6.34438 6.40146 6.41934 6.53042 6.78442 6.84476 6.86279 7.12029 7.21624 7.54972 7.69794 7.81618 7.96348 8.36528 8.44876 8.81498 9.11066 9.67928 11.11794 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.004291 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.251404 B = 6524.435831 C = 7130.873796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.093 3.907 15 C -0.104 4.104 16 C -0.097 4.097 17 C -0.046 4.046 18 C -0.143 4.143 19 C 0.470 3.530 20 O -0.508 6.508 21 O -0.357 6.357 22 C 0.034 3.966 23 C -0.101 4.101 24 C -0.145 4.145 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.259 0.741 31 H 0.316 0.684 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 11.843 -6.909 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.018 4.018 15 C -0.142 4.142 16 C -0.136 4.136 17 C -0.047 4.047 18 C -0.200 4.200 19 C 0.313 3.687 20 O -0.395 6.395 21 O -0.274 6.274 22 C -0.060 4.060 23 C -0.140 4.140 24 C -0.185 4.185 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.207 12.010 -7.019 17.254 hybrid contribution 0.188 0.352 0.771 0.868 sum -10.019 12.362 -6.248 17.095 Atomic orbital electron populations 1.21878 0.99652 0.99513 0.99601 1.21785 0.91176 1.00595 1.03015 1.19146 0.95259 0.89809 0.84553 0.97883 1.21206 0.91395 1.36293 1.04172 0.92147 1.24947 0.97956 0.95723 0.95895 1.69862 1.34696 1.39567 1.09621 0.86638 0.85989 0.78126 0.77080 1.20457 1.21533 1.20344 1.60773 1.36936 1.01295 1.32094 1.21506 0.94188 0.90061 0.96075 1.21571 1.02588 0.91959 0.98126 1.21505 0.92877 0.97458 1.01720 1.20619 0.99277 0.85817 0.99036 1.21956 0.97750 1.03112 0.97191 1.24041 0.79981 0.92302 0.72408 1.90646 1.39496 1.62547 1.46785 1.86528 1.37572 1.25096 1.78158 1.23241 1.03327 0.77330 1.02136 1.21523 1.02166 0.96250 0.94028 1.22357 0.99794 0.94252 1.02062 0.94525 0.93928 0.94609 0.94155 0.88325 0.93114 0.86591 0.90070 0.92165 0.90767 0.91493 0.91043 0.92443 0.89902 0.91641 0.88253 0.91981 0.92105 0.91416 0.91178 0.91886 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.74 37.15 0.36 -2.42 16 2 C -0.13 -2.92 5.35 -26.74 -0.14 -3.07 16 3 C 0.22 5.26 1.82 -68.87 -0.13 5.14 16 4 H 0.00 0.09 7.22 -51.93 -0.37 -0.28 16 5 C -0.49 -13.37 8.61 -34.44 -0.30 -13.66 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.31 11.29 55.43 0.63 -24.68 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.62 6.05 -100.96 -0.61 -14.23 16 14 C 0.09 1.61 2.27 -67.71 -0.15 1.46 16 15 C -0.10 -1.55 5.25 -26.73 -0.14 -1.69 16 16 C -0.10 -1.35 4.02 -26.73 -0.11 -1.46 16 17 C -0.05 -0.59 0.71 -155.66 -0.11 -0.70 16 18 C -0.14 -1.52 7.71 37.16 0.29 -1.23 16 19 C 0.47 6.40 6.55 36.00 0.24 6.63 16 20 O -0.51 -8.16 15.73 -18.75 -0.30 -8.45 16 21 O -0.36 -4.24 10.37 -39.24 -0.41 -4.65 16 22 C 0.03 0.29 10.56 101.05 1.07 1.36 16 23 C -0.10 -1.34 4.66 -26.73 -0.12 -1.46 16 24 C -0.15 -2.14 4.88 -26.73 -0.13 -2.27 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.59 6.48 -51.93 -0.34 0.25 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.32 5.76 6.22 -39.29 -0.24 5.52 16 32 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 33 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.87 4.81 -51.93 -0.25 0.62 16 39 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 42 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.84 8.11 -51.93 -0.42 0.41 16 45 H 0.06 0.83 6.42 -51.93 -0.33 0.49 16 46 H 0.07 1.12 7.56 -51.93 -0.39 0.72 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -29.35 352.31 -7.88 -37.23 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.01 Total: 4.93 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 0.53 Total: -11.95 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.01 Total: -38.92 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.70 Total: -13.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.35 -7.88 -37.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168765291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.146 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds