Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 C 1.52999 * 109.47204 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47214 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00300 * 95.53156 * 5 4 3 7 7 H 1.08001 * 119.99885 * 230.87908 * 6 5 4 8 8 C 1.38809 * 120.00107 * 50.87474 * 6 5 4 9 9 N 1.31610 * 120.00166 * 201.81735 * 8 6 5 10 10 Si 1.86812 * 119.99864 * 21.81772 * 8 6 5 11 11 H 1.48495 * 109.46620 * 174.24008 * 10 8 6 12 12 H 1.48501 * 109.46801 * 54.23968 * 10 8 6 13 13 H 1.48496 * 109.46744 * 294.24216 * 10 8 6 14 14 C 1.46497 * 119.99538 * 275.53173 * 5 4 3 15 15 H 1.08998 * 109.47984 * 3.94153 * 14 5 4 16 16 C 1.52999 * 109.47368 * 123.94857 * 14 5 4 17 17 C 1.52999 * 109.49473 * 180.16978 * 16 14 5 18 18 C 1.53020 * 109.47452 * 299.83773 * 17 16 14 19 19 C 1.52947 * 109.45542 * 59.76489 * 18 17 16 20 20 C 1.52961 * 109.82877 * 300.37619 * 19 18 17 21 21 O 1.43695 * 109.44313 * 180.22744 * 19 18 17 22 22 C 1.44802 * 104.79514 * 215.86684 * 21 19 18 23 23 C 1.54917 * 101.72514 * 36.07210 * 22 21 19 24 24 O 1.43318 * 109.64816 * 60.89354 * 19 18 17 25 25 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46879 * 299.99223 * 1 2 3 27 27 H 1.08993 * 109.46949 * 59.99990 * 1 2 3 28 28 H 1.09003 * 109.47154 * 240.00106 * 2 1 3 29 29 H 1.09003 * 109.47126 * 120.00500 * 2 1 3 30 30 H 1.09003 * 109.47011 * 60.00554 * 3 2 1 31 31 H 1.08993 * 109.47175 * 299.99871 * 3 2 1 32 32 H 1.09003 * 109.47154 * 60.00106 * 4 3 2 33 33 H 1.09003 * 109.47126 * 300.00500 * 4 3 2 34 34 H 0.96998 * 120.00126 * 0.02562 * 9 8 6 35 35 H 1.08994 * 109.46889 * 300.18288 * 16 14 5 36 36 H 1.08999 * 109.46597 * 60.16207 * 16 14 5 37 37 H 1.08996 * 109.47209 * 59.83851 * 17 16 14 38 38 H 1.09006 * 109.46752 * 179.83992 * 17 16 14 39 39 H 1.09001 * 109.46839 * 179.75887 * 18 17 16 40 40 H 1.09000 * 109.47237 * 299.77174 * 18 17 16 41 41 H 1.09001 * 109.46912 * 299.64460 * 20 19 18 42 42 H 1.09000 * 109.47287 * 179.63926 * 20 19 18 43 43 H 1.09001 * 110.97891 * 277.96045 * 22 21 19 44 44 H 1.09001 * 111.00801 * 154.18917 * 22 21 19 45 45 H 1.09005 * 110.69181 * 206.08154 * 23 22 21 46 46 H 1.08996 * 110.84358 * 82.94419 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3939 3.4308 1.1819 7 1 3.9889 4.4024 1.4237 8 6 5.2545 2.7975 2.0680 9 7 5.2522 3.1328 3.3407 10 14 6.4158 1.4693 1.4540 11 1 7.3187 1.0528 2.5569 12 1 7.2236 2.0006 0.3268 13 1 5.6282 0.2990 0.9902 14 6 4.1877 3.5553 -1.2613 15 1 3.8112 2.9399 -2.0783 16 6 3.3788 4.8518 -1.1848 17 6 3.5102 5.6142 -2.5047 18 6 4.9819 5.9497 -2.7558 19 6 5.7946 4.6559 -2.8256 20 6 5.6606 3.8874 -1.5098 21 8 7.1774 4.9715 -3.0561 22 6 7.6603 3.9110 -3.9157 23 6 6.4241 3.6431 -4.8101 24 8 5.3180 3.8452 -3.9071 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 4.6490 3.8221 3.6596 35 1 2.3302 4.6155 -1.0045 36 1 3.7574 5.4686 -0.3697 37 1 3.1341 4.9964 -3.3202 38 1 2.9314 6.5364 -2.4507 39 1 5.0758 6.4892 -3.6983 40 1 5.3568 6.5709 -1.9424 41 1 6.0382 4.5001 -0.6912 42 1 6.2365 2.9638 -1.5682 43 1 7.9210 3.0262 -3.3349 44 1 8.5082 4.2474 -4.5125 45 1 6.4339 2.6192 -5.1840 46 1 6.3819 4.3530 -5.6360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169954959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -96.504034 kcal Electronic energy + Delta-G solvation = -24598.809623 eV Core-core repulsion = 21295.072117 eV Total energy + Delta-G solvation = -3303.737506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55809 -37.43470 -35.38528 -34.73603 -33.61655 -31.58355 -30.23476 -29.56332 -27.63854 -27.18327 -23.78106 -23.28309 -22.58593 -21.74388 -20.57343 -20.11374 -19.09704 -17.27954 -16.61737 -16.43001 -15.40370 -15.08121 -14.73200 -14.42413 -14.09683 -14.07113 -13.63596 -13.37645 -13.13124 -13.07226 -12.61429 -12.50735 -12.23104 -12.13742 -11.96895 -11.81566 -11.69399 -11.28048 -11.02506 -10.88621 -10.58977 -10.52631 -10.30370 -10.26423 -10.09013 -10.03672 -9.88122 -9.80413 -9.45192 -9.15376 -8.95342 -8.28930 -6.83554 -6.04643 -3.52682 3.46198 3.53638 3.59325 3.72781 4.16602 4.62964 4.65432 4.88319 4.95124 5.04859 5.23271 5.30275 5.36704 5.42633 5.46342 5.54602 5.60772 5.61067 5.65246 5.81943 5.86312 5.92126 5.99848 6.06824 6.08991 6.19285 6.22126 6.33068 6.35900 6.38428 6.40207 6.44896 6.55439 6.65488 6.67079 6.75304 6.80801 7.05693 7.10393 7.17321 7.19185 7.42087 8.32186 8.69943 9.13845 9.65358 10.35613 11.10571 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.006934 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.126301 B = 4037.179925 C = 4836.337208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.133 4.133 4 C 0.139 3.861 5 N -0.598 5.598 6 C -0.349 4.349 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.911 5.911 10 Si 1.047 2.953 11 H -0.298 1.298 12 H -0.287 1.287 13 H -0.284 1.284 14 C 0.183 3.817 15 H 0.054 0.946 16 C -0.124 4.124 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.259 3.741 20 C -0.138 4.138 21 O -0.376 6.376 22 C 0.015 3.985 23 C 0.020 3.980 24 O -0.373 6.373 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.265 0.735 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -0.563 -14.973 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.014 3.986 5 N -0.319 5.319 6 C -0.478 4.478 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.877 3.123 11 H -0.225 1.225 12 H -0.214 1.214 13 H -0.211 1.211 14 C 0.076 3.924 15 H 0.073 0.927 16 C -0.163 4.163 17 C -0.148 4.148 18 C -0.152 4.152 19 C 0.182 3.818 20 C -0.178 4.178 21 O -0.296 6.296 22 C -0.061 4.061 23 C -0.057 4.057 24 O -0.294 6.294 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.045 -1.504 -14.381 14.459 hybrid contribution -0.958 1.010 -0.555 1.499 sum -1.004 -0.494 -14.936 14.978 Atomic orbital electron populations 1.21753 0.96733 1.00577 1.01462 1.21523 0.95050 0.98442 1.01285 1.22160 0.99215 0.94528 1.01365 1.21337 0.91377 0.86781 0.99148 1.44175 1.74764 1.10816 1.02159 1.19830 1.26569 1.05774 0.95627 0.92957 1.26517 0.97066 1.01733 0.94253 1.70917 1.40174 1.30260 1.13364 0.84066 0.77045 0.76288 0.74876 1.22516 1.21362 1.21100 1.20273 0.90884 0.92273 0.88947 0.92729 1.21907 1.00322 0.98116 0.95927 1.21436 0.94332 0.99991 0.99034 1.21759 0.95943 0.95329 1.02191 1.23577 0.79182 0.90635 0.88373 1.22598 1.00952 1.00028 0.94235 1.89240 1.24671 1.46581 1.69114 1.24304 0.97769 0.92018 0.92053 1.24103 0.85678 1.02322 0.93575 1.88908 1.33748 1.71899 1.34826 0.93567 0.92971 0.93220 0.92804 0.92358 0.92047 0.93378 0.95312 0.92039 0.92481 0.92610 0.91546 0.91777 0.92313 0.91917 0.90379 0.89500 0.92337 0.90761 0.87946 0.88800 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 4 C 0.14 3.01 4.18 -4.04 -0.02 2.99 16 5 N -0.60 -13.95 1.73 -165.66 -0.29 -14.24 16 6 C -0.35 -9.44 8.31 -15.06 -0.13 -9.56 16 7 H 0.05 1.55 7.19 -52.49 -0.38 1.17 16 8 C 0.01 0.25 5.18 -17.44 -0.09 0.16 16 9 N -0.91 -27.76 13.71 55.49 0.76 -27.00 16 10 Si 1.05 26.07 26.91 -169.99 -4.57 21.49 16 11 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 12 H -0.29 -6.93 6.89 56.52 0.39 -6.54 16 13 H -0.28 -6.58 5.85 56.52 0.33 -6.25 16 14 C 0.18 3.76 2.49 -67.93 -0.17 3.59 16 15 H 0.05 1.10 7.47 -51.93 -0.39 0.72 16 16 C -0.12 -2.34 5.07 -26.73 -0.14 -2.47 16 17 C -0.11 -1.72 5.79 -26.72 -0.15 -1.87 16 18 C -0.11 -1.82 5.33 -26.75 -0.14 -1.96 16 19 C 0.26 4.47 1.02 -26.78 -0.03 4.44 16 20 C -0.14 -2.82 4.59 -26.74 -0.12 -2.95 16 21 O -0.38 -6.33 10.99 -59.04 -0.65 -6.98 16 22 C 0.02 0.19 7.91 38.17 0.30 0.50 16 23 C 0.02 0.24 8.08 38.17 0.31 0.55 16 24 O -0.37 -6.01 9.62 -59.04 -0.57 -6.58 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.06 1.45 4.94 -51.93 -0.26 1.20 16 34 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.39 7.07 -51.93 -0.37 1.02 16 37 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.99 7.74 -51.93 -0.40 1.59 16 42 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -30.04 351.11 -8.94 -38.98 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.60 Total: 2.04 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.31 Total: -13.00 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.47 Total: -41.24 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.22 Total: -13.56 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -4.57 Total: 21.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.04 -8.94 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169954959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.523 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds