Wall clock time and date at job start Tue Mar 31 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47298 * 2 1 4 4 C 1.52993 * 109.47450 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47353 * 186.12185 * 4 3 2 6 6 C 1.46894 * 110.99922 * 286.61304 * 5 4 3 7 7 C 1.50696 * 109.47358 * 75.29516 * 6 5 4 8 8 H 1.08002 * 119.99615 * 2.54170 * 7 6 5 9 9 C 1.37878 * 120.00243 * 182.53297 * 7 6 5 10 10 N 1.31514 * 120.00108 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99953 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.46964 * 90.00383 * 11 9 7 13 13 H 1.48501 * 109.47089 * 210.00337 * 11 9 7 14 14 H 1.48504 * 109.47085 * 330.00180 * 11 9 7 15 15 C 1.46906 * 110.99729 * 162.65773 * 5 4 3 16 16 H 1.09000 * 110.81679 * 314.76949 * 15 5 4 17 17 C 1.54887 * 110.75228 * 78.10528 * 15 5 4 18 18 C 1.54277 * 104.31128 * 156.31965 * 17 15 5 19 19 C 1.53875 * 106.59510 * 336.32369 * 18 17 15 20 20 H 1.08998 * 110.03113 * 119.33151 * 19 18 17 21 21 C 1.50703 * 110.02907 * 240.71260 * 19 18 17 22 22 O 1.20821 * 119.99783 * 118.55213 * 21 19 18 23 23 O 1.34221 * 119.99984 * 298.54694 * 21 19 18 24 24 C 1.45196 * 116.99999 * 180.02562 * 23 21 19 25 25 C 1.54263 * 106.60039 * 359.97438 * 19 18 17 26 26 H 1.09002 * 109.46682 * 299.99235 * 1 2 3 27 27 H 1.08998 * 109.47337 * 59.99635 * 1 2 3 28 28 H 1.09003 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46677 * 239.99979 * 2 1 3 30 30 H 1.08998 * 109.47337 * 120.00365 * 2 1 3 31 31 H 1.08999 * 109.46806 * 60.00231 * 3 2 1 32 32 H 1.08998 * 109.47224 * 300.00434 * 3 2 1 33 33 H 1.08997 * 109.47290 * 66.12071 * 4 3 2 34 34 H 1.09001 * 109.46952 * 306.12637 * 4 3 2 35 35 H 1.09005 * 109.47218 * 195.29799 * 6 5 4 36 36 H 1.09003 * 109.47452 * 315.29361 * 6 5 4 37 37 H 0.96998 * 120.00043 * 179.97438 * 10 9 7 38 38 H 1.08994 * 110.48931 * 37.57947 * 17 15 5 39 39 H 1.09001 * 110.48836 * 275.06247 * 17 15 5 40 40 H 1.09000 * 110.02592 * 95.60454 * 18 17 15 41 41 H 1.08997 * 110.03484 * 216.98749 * 18 17 15 42 42 H 1.09001 * 109.47552 * 180.02562 * 24 23 21 43 43 H 1.09008 * 109.47234 * 299.99766 * 24 23 21 44 44 H 1.09003 * 109.47722 * 59.99705 * 24 23 21 45 45 H 1.09004 * 110.48308 * 142.28866 * 25 19 18 46 46 H 1.09001 * 110.48910 * 264.79879 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0597 2.8196 0.1471 6 6 3.8650 3.5833 -1.0925 7 6 2.4099 3.9489 -1.2341 8 1 1.7077 3.6800 -0.4588 9 6 1.9750 4.6267 -2.3532 10 7 2.8300 4.9539 -3.2974 11 14 0.1714 5.0805 -2.5282 12 1 -0.0622 6.4199 -1.9312 13 1 -0.1943 5.1093 -3.9672 14 1 -0.6629 4.0728 -1.8255 15 6 5.4696 2.8355 0.5593 16 1 5.6465 2.1199 1.3623 17 6 6.3974 2.5473 -0.6470 18 6 7.7483 3.1766 -0.2479 19 6 7.4352 4.2671 0.7916 20 1 7.9339 4.0392 1.7336 21 6 7.8862 5.6114 0.2811 22 8 7.0798 6.4952 0.1128 23 8 9.1838 5.8269 0.0137 24 6 9.5461 7.1455 -0.4743 25 6 5.9051 4.2630 0.9874 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 1.0266 -0.9405 34 1 3.9336 0.8365 0.8292 35 1 4.4662 4.4919 -1.0577 36 1 4.1719 2.9771 -1.9449 37 1 2.5240 5.4304 -4.0849 38 1 6.0083 3.0196 -1.5489 39 1 6.5063 1.4731 -0.7965 40 1 8.3982 2.4189 0.1900 41 1 8.2269 3.6189 -1.1216 42 1 10.6210 7.1850 -0.6507 43 1 9.0177 7.3459 -1.4064 44 1 9.2715 7.8956 0.2674 45 1 5.6539 4.4401 2.0332 46 1 5.4370 5.0140 0.3511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170547769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:00 Heat of formation + Delta-G solvation = -99.359428 kcal Electronic energy + Delta-G solvation = -23620.332836 eV Core-core repulsion = 20316.471511 eV Total energy + Delta-G solvation = -3303.861325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51763 -38.51694 -36.40011 -35.59586 -33.56650 -32.33336 -29.28077 -28.59246 -27.83002 -27.34160 -25.62461 -22.89689 -22.21285 -21.63426 -20.30608 -19.53308 -18.75301 -17.29254 -16.83254 -16.27580 -16.20922 -15.23708 -14.94854 -14.55238 -14.38942 -13.75259 -13.43350 -13.33078 -13.21572 -13.00817 -12.70586 -12.14518 -12.03331 -11.79737 -11.67801 -11.44429 -11.30013 -11.10526 -10.96748 -10.85232 -10.71018 -10.67805 -10.59471 -10.55138 -10.29691 -10.15537 -10.03950 -9.90676 -9.73179 -9.35662 -8.94064 -8.29647 -7.15549 -5.94550 -3.92455 2.42214 2.83608 3.36446 3.42800 3.45311 4.45896 4.61844 4.78778 4.89848 5.12117 5.14695 5.20699 5.32932 5.39018 5.52772 5.54161 5.63187 5.64706 5.70155 5.72503 5.74923 5.85562 5.96857 6.01831 6.12247 6.23770 6.25474 6.28810 6.39262 6.46198 6.49280 6.52508 6.55660 6.66339 6.69487 6.86887 7.06863 7.31847 7.42994 7.49440 7.91990 7.95094 8.23035 8.30090 8.64358 9.13187 9.68599 11.15982 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.005216 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.264746 B = 5366.356603 C = 6793.058454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.075 3.925 5 N -0.529 5.529 6 C 0.190 3.810 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.086 3.914 16 H 0.075 0.925 17 C -0.165 4.165 18 C -0.105 4.105 19 C -0.083 4.083 20 H 0.105 0.895 21 C 0.462 3.538 22 O -0.493 6.493 23 O -0.364 6.364 24 C 0.034 3.966 25 C -0.108 4.108 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.022 0.978 34 H 0.046 0.954 35 H 0.032 0.968 36 H -0.004 1.004 37 H 0.259 0.741 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.119 -4.871 7.260 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.053 4.053 5 N -0.252 5.252 6 C 0.065 3.935 7 C -0.540 4.540 8 H 0.091 0.909 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.024 4.024 16 H 0.093 0.907 17 C -0.205 4.205 18 C -0.144 4.144 19 C -0.103 4.103 20 H 0.123 0.877 21 C 0.304 3.696 22 O -0.379 6.379 23 O -0.281 6.281 24 C -0.060 4.060 25 C -0.145 4.145 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.601 -4.247 7.389 12.838 hybrid contribution -0.318 0.217 -0.954 1.029 sum 9.284 -4.030 6.435 11.993 Atomic orbital electron populations 1.21735 0.96537 1.00366 1.01972 1.21543 0.95408 0.98580 1.00571 1.22003 0.94866 0.94384 1.04935 1.21856 0.96059 0.89455 0.97911 1.62159 1.13715 1.12296 1.36989 1.19833 0.97389 0.92577 0.83670 1.21369 0.93714 1.34962 1.03986 0.90933 1.24982 0.97458 0.96188 0.96083 1.69959 1.34038 1.40617 1.09196 0.86616 0.85564 0.79013 0.76971 1.20770 1.21515 1.19725 1.22679 0.88703 0.95570 0.95458 0.90679 1.23199 0.95164 1.00319 1.01776 1.21991 0.98426 0.96321 0.97627 1.21737 0.99201 0.88995 1.00357 0.87656 1.23888 0.80060 0.91077 0.74584 1.90712 1.53746 1.45571 1.47848 1.86492 1.28535 1.36002 1.77059 1.23222 1.01119 0.81855 0.99769 1.22548 0.89875 0.99227 1.02877 0.93041 0.92627 0.93767 0.92848 0.93322 0.92219 0.87933 0.95979 0.93580 0.94971 0.98623 0.93139 0.89635 0.92011 0.90948 0.91527 0.88442 0.91834 0.92101 0.91080 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.12 -2.35 3.96 -26.74 -0.11 -2.46 16 4 C 0.08 1.42 4.77 -3.83 -0.02 1.40 16 5 N -0.53 -11.00 4.46 -225.46 -1.01 -12.01 16 6 C 0.19 4.80 3.21 -4.98 -0.02 4.79 16 7 C -0.50 -13.70 7.03 -34.44 -0.24 -13.94 16 8 H 0.07 1.95 5.81 -52.49 -0.31 1.64 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 11 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.09 1.48 2.94 -65.52 -0.19 1.28 16 16 H 0.08 1.13 7.80 -51.93 -0.41 0.73 16 17 C -0.17 -2.71 5.88 -25.07 -0.15 -2.86 16 18 C -0.11 -1.44 6.42 -25.61 -0.16 -1.60 16 19 C -0.08 -1.19 3.41 -90.65 -0.31 -1.50 16 20 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 21 C 0.46 7.48 7.02 36.01 0.25 7.73 16 22 O -0.49 -9.84 15.16 -18.75 -0.28 -10.13 16 23 O -0.36 -5.04 10.49 -39.23 -0.41 -5.46 16 24 C 0.03 0.38 10.56 101.05 1.07 1.45 16 25 C -0.11 -1.85 5.64 -24.87 -0.14 -1.99 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 32 H 0.10 2.29 5.38 -51.93 -0.28 2.02 16 33 H 0.02 0.43 7.79 -51.93 -0.40 0.03 16 34 H 0.05 0.76 7.75 -51.93 -0.40 0.35 16 35 H 0.03 0.90 5.91 -51.93 -0.31 0.59 16 36 H 0.00 -0.11 6.77 -51.93 -0.35 -0.46 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.71 5.75 -51.93 -0.30 1.41 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.75 8.13 -51.92 -0.42 0.33 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.10 2.21 4.97 -51.93 -0.26 1.95 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -30.99 355.96 -8.56 -39.55 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.03 Total: 2.11 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 0.10 Total: -10.11 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.27 Total: -38.06 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.70 Total: -15.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.99 -8.56 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170547769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.807 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds