Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47225 * 2 1 4 4 C 1.52998 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47209 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99951 * 270.00195 * 5 4 3 7 7 H 1.07997 * 120.00300 * 141.90189 * 6 5 4 8 8 C 1.38815 * 119.99827 * 321.89270 * 6 5 4 9 9 N 1.31622 * 119.99746 * 156.90547 * 8 6 5 10 10 Si 1.86799 * 120.00151 * 336.90761 * 8 6 5 11 11 H 1.48497 * 109.47130 * 95.42931 * 10 8 6 12 12 H 1.48501 * 109.47090 * 215.42863 * 10 8 6 13 13 H 1.48503 * 109.47197 * 335.42679 * 10 8 6 14 14 C 1.46504 * 119.99971 * 89.99682 * 5 4 3 15 15 H 1.08997 * 109.46914 * 5.10325 * 14 5 4 16 16 C 1.52999 * 109.46814 * 245.10083 * 14 5 4 17 17 C 1.53001 * 109.46737 * 180.02562 * 16 14 5 18 18 C 1.53005 * 109.47163 * 59.99702 * 17 16 14 19 19 C 1.52996 * 109.47480 * 300.00353 * 18 17 16 20 20 H 1.09005 * 109.46538 * 299.99836 * 19 18 17 21 21 C 1.50693 * 109.47383 * 180.02562 * 19 18 17 22 22 O 1.20826 * 120.00350 * 239.99933 * 21 19 18 23 23 O 1.34236 * 120.00339 * 59.99549 * 21 19 18 24 24 C 1.45197 * 116.99996 * 180.02562 * 23 21 19 25 25 C 1.53001 * 109.47211 * 59.99676 * 19 18 17 26 26 H 1.09004 * 109.47359 * 59.99731 * 1 2 3 27 27 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46925 * 300.00248 * 1 2 3 29 29 H 1.09005 * 109.46745 * 240.00273 * 2 1 3 30 30 H 1.09004 * 109.47359 * 120.00269 * 2 1 3 31 31 H 1.08996 * 109.46942 * 60.00304 * 3 2 1 32 32 H 1.09004 * 109.47172 * 300.00383 * 3 2 1 33 33 H 1.08997 * 109.47467 * 59.99654 * 4 3 2 34 34 H 1.09004 * 109.47179 * 300.00040 * 4 3 2 35 35 H 0.96994 * 120.00069 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47486 * 60.00423 * 16 14 5 37 37 H 1.09001 * 109.47284 * 299.99448 * 16 14 5 38 38 H 1.09000 * 109.47410 * 300.00093 * 17 16 14 39 39 H 1.09001 * 109.47397 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47200 * 179.97438 * 18 17 16 41 41 H 1.08997 * 109.46797 * 60.00420 * 18 17 16 42 42 H 1.09001 * 109.46603 * 180.02562 * 24 23 21 43 43 H 1.08993 * 109.47359 * 299.99952 * 24 23 21 44 44 H 1.09002 * 109.47088 * 60.00567 * 24 23 21 45 45 H 1.08989 * 109.47015 * 60.00315 * 25 19 18 46 46 H 1.09004 * 109.46732 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1874 7 1 4.0445 4.5166 -1.2873 8 6 4.8277 2.7760 -2.2615 9 7 4.6381 3.2120 -3.4889 10 14 5.8253 1.2248 -1.9650 11 1 4.9469 0.0362 -2.1094 12 1 6.9282 1.1485 -2.9565 13 1 6.3940 1.2565 -0.5936 14 6 4.3031 3.5147 1.2672 15 1 4.1546 2.8200 2.0939 16 6 3.3299 4.6872 1.4051 17 6 3.5858 5.4092 2.7295 18 6 5.0230 5.9334 2.7552 19 6 5.9962 4.7609 2.6171 20 1 5.8479 4.0665 3.4441 21 6 7.4117 5.2772 2.6430 22 8 8.1414 5.0875 1.6988 23 8 7.8621 5.9479 3.7150 24 6 9.2357 6.4163 3.6703 25 6 5.7402 4.0389 1.2927 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9284 0.8891 35 1 5.0162 2.7277 -4.2394 36 1 2.3061 4.3137 1.3865 37 1 3.4784 5.3819 0.5784 38 1 3.4377 4.7148 3.5565 39 1 2.8929 6.2448 2.8277 40 1 5.2053 6.4482 3.6986 41 1 5.1712 6.6279 1.9283 42 1 9.4710 6.9405 4.5966 43 1 9.9063 5.5650 3.5546 44 1 9.3609 7.0949 2.8265 45 1 5.8884 4.7333 0.4658 46 1 6.4333 3.2033 1.1946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172632025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -94.487884 kcal Electronic energy + Delta-G solvation = -23832.563359 eV Core-core repulsion = 20528.913280 eV Total energy + Delta-G solvation = -3303.650079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.48194 -38.25590 -36.33952 -35.75872 -33.73911 -31.60710 -30.80317 -29.59773 -27.71843 -27.31783 -24.15075 -23.50032 -22.69668 -21.05585 -20.42834 -20.13139 -19.24742 -17.36328 -16.59714 -16.22600 -16.17858 -15.36378 -14.66169 -14.55308 -14.20531 -13.88794 -13.70448 -13.45863 -13.06578 -12.91510 -12.61212 -12.51590 -12.33816 -12.05494 -11.99959 -11.65174 -11.64096 -11.21054 -10.90264 -10.87214 -10.73544 -10.62041 -10.53149 -10.47329 -10.29014 -10.22549 -10.06149 -9.86807 -9.67147 -9.53142 -9.29267 -8.40078 -6.73604 -5.93552 -3.33980 2.41658 2.84958 3.36487 3.53456 3.58965 4.58905 4.75517 4.84868 5.00503 5.08393 5.14840 5.16812 5.35854 5.42408 5.44130 5.48339 5.58316 5.62047 5.67128 5.70460 5.78450 5.88060 5.96632 6.02792 6.13786 6.19072 6.27520 6.30866 6.34247 6.35231 6.37941 6.44359 6.52114 6.56643 6.64220 6.74770 6.81221 6.98810 7.09595 7.15688 7.18904 7.95392 8.13499 8.46097 9.07012 9.79139 10.19595 11.22145 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.005556 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.550643 B = 5038.682066 C = 6037.898191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.132 4.132 4 C 0.138 3.862 5 N -0.601 5.601 6 C -0.259 4.259 7 H 0.079 0.921 8 C 0.039 3.961 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.182 3.818 15 H 0.050 0.950 16 C -0.130 4.130 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.075 4.075 20 H 0.101 0.899 21 C 0.460 3.540 22 O -0.498 6.498 23 O -0.364 6.364 24 C 0.034 3.966 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 2.027 15.521 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.172 4.172 4 C 0.013 3.987 5 N -0.321 5.321 6 C -0.388 4.388 7 H 0.096 0.904 8 C -0.162 4.162 9 N -0.541 5.541 10 Si 0.703 3.297 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.075 3.925 15 H 0.069 0.931 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.144 4.144 19 C -0.095 4.095 20 H 0.119 0.881 21 C 0.303 3.697 22 O -0.384 6.384 23 O -0.281 6.281 24 C -0.060 4.060 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.117 1.965 15.033 15.162 hybrid contribution 0.963 -0.868 -0.116 1.302 sum 0.846 1.097 14.917 14.981 Atomic orbital electron populations 1.21749 0.96575 1.00584 1.01590 1.21531 0.95232 0.98467 1.01178 1.22126 0.98537 0.94565 1.01940 1.21198 0.92099 0.86485 0.98903 1.44195 1.74920 1.11189 1.01830 1.18619 1.36569 0.96671 0.86942 0.90384 1.25451 0.97753 0.97702 0.95259 1.69876 1.45132 1.41201 0.97867 0.86995 0.80754 0.83946 0.77973 1.21579 1.23186 1.19359 1.20324 0.91175 0.92560 0.88476 0.93134 1.22032 0.99914 0.98889 0.96059 1.21518 0.94970 0.99800 0.98858 1.21500 0.94617 0.96098 1.02207 1.21239 0.86755 0.98889 1.02636 0.88076 1.24182 0.91021 0.74797 0.79725 1.90694 1.58145 1.53785 1.35803 1.86521 1.31147 1.67176 1.43265 1.23196 0.79996 0.99670 1.03124 1.21904 0.98854 1.00361 0.93607 0.92808 0.93612 0.93157 0.92484 0.92881 0.93067 0.91377 0.92998 0.94729 0.92865 0.92333 0.91319 0.92272 0.92091 0.91426 0.91398 0.88482 0.92174 0.92045 0.89833 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.13 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.44 5.54 -26.73 -0.15 -2.58 16 4 C 0.14 2.93 4.50 -4.04 -0.02 2.91 16 5 N -0.60 -13.60 2.00 -165.66 -0.33 -13.93 16 6 C -0.26 -6.99 8.50 -15.06 -0.13 -7.12 16 7 H 0.08 2.28 7.22 -52.49 -0.38 1.90 16 8 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 9 N -0.90 -27.47 13.97 55.49 0.78 -26.70 16 10 Si 0.87 22.65 25.13 -169.99 -4.27 18.38 16 11 H -0.29 -7.23 6.67 56.52 0.38 -6.85 16 12 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 13 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.18 3.40 2.64 -67.93 -0.18 3.22 16 15 H 0.05 0.86 7.77 -51.93 -0.40 0.46 16 16 C -0.13 -2.16 5.25 -26.73 -0.14 -2.30 16 17 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 18 C -0.11 -1.39 5.14 -26.73 -0.14 -1.53 16 19 C -0.08 -1.12 2.63 -91.78 -0.24 -1.36 16 20 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 21 C 0.46 7.41 7.26 36.00 0.26 7.67 16 22 O -0.50 -9.84 15.73 -18.75 -0.29 -10.13 16 23 O -0.36 -4.91 10.47 -39.27 -0.41 -5.32 16 24 C 0.03 0.36 10.56 101.05 1.07 1.42 16 25 C -0.11 -2.06 3.66 -26.73 -0.10 -2.16 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.05 1.23 3.40 -51.93 -0.18 1.05 16 34 H 0.03 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.30 7.20 -51.93 -0.37 0.93 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 44 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 45 H 0.08 1.85 7.51 -51.94 -0.39 1.46 16 46 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -31.32 358.51 -7.41 -38.73 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.47 Total: -0.28 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 0.20 Total: -6.15 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.44 Total: -40.63 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.71 Total: -15.45 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.27 Total: 18.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.32 -7.41 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172632025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.760 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds