Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 C 1.53007 * 109.46823 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46700 * 185.85799 * 4 3 2 6 6 C 1.36937 * 120.00684 * 296.33592 * 5 4 3 7 7 H 1.07997 * 119.99697 * 31.41659 * 6 5 4 8 8 C 1.38811 * 120.00448 * 211.42507 * 6 5 4 9 9 N 1.31624 * 120.00054 * 18.03577 * 8 6 5 10 10 Si 1.86797 * 120.00165 * 198.04405 * 8 6 5 11 11 H 1.48503 * 109.47243 * 59.99092 * 10 8 6 12 12 H 1.48498 * 109.47381 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46863 * 299.99384 * 10 8 6 14 14 C 1.46509 * 119.99617 * 116.33619 * 5 4 3 15 15 H 1.09002 * 109.46655 * 110.07732 * 14 5 4 16 16 C 1.53000 * 109.47060 * 230.07735 * 14 5 4 17 17 C 1.53004 * 109.46897 * 59.99981 * 16 14 5 18 18 C 1.52995 * 109.46910 * 60.00079 * 17 16 14 19 19 C 1.53000 * 109.47276 * 299.99689 * 18 17 16 20 20 H 1.08998 * 109.46819 * 300.00382 * 19 18 17 21 21 C 1.50698 * 109.47142 * 180.02562 * 19 18 17 22 22 O 1.20825 * 119.99882 * 240.00148 * 21 19 18 23 23 O 1.34230 * 120.00338 * 59.99612 * 21 19 18 24 24 C 1.45195 * 117.00179 * 180.02562 * 23 21 19 25 25 C 1.52994 * 109.46949 * 350.07903 * 14 5 4 26 26 H 1.08994 * 109.47322 * 59.99371 * 1 2 3 27 27 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47123 * 299.99802 * 1 2 3 29 29 H 1.09007 * 109.46640 * 240.00771 * 2 1 3 30 30 H 1.08994 * 109.47322 * 120.00629 * 2 1 3 31 31 H 1.08999 * 109.47409 * 60.00776 * 3 2 1 32 32 H 1.08996 * 109.47553 * 299.99900 * 3 2 1 33 33 H 1.08997 * 109.47166 * 65.86524 * 4 3 2 34 34 H 1.08998 * 109.47170 * 305.85937 * 4 3 2 35 35 H 0.96994 * 119.99780 * 184.95348 * 9 8 6 36 36 H 1.09002 * 109.46976 * 300.00386 * 16 14 5 37 37 H 1.08997 * 109.47168 * 180.02562 * 16 14 5 38 38 H 1.08998 * 109.47321 * 299.99613 * 17 16 14 39 39 H 1.09005 * 109.46607 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.46850 * 179.97438 * 18 17 16 41 41 H 1.08999 * 109.47085 * 60.00293 * 18 17 16 42 42 H 1.09001 * 109.47347 * 300.00205 * 24 23 21 43 43 H 1.08996 * 109.47559 * 60.00348 * 24 23 21 44 44 H 1.09001 * 109.46881 * 180.02562 * 24 23 21 45 45 H 1.09009 * 109.46633 * 180.02562 * 25 14 5 46 46 H 1.08995 * 109.47792 * 60.00040 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8165 0.1403 6 6 3.7902 3.7418 -0.8328 7 1 2.8751 3.6764 -1.4026 8 6 4.6946 4.7637 -1.0871 9 7 5.9390 4.6600 -0.6710 10 14 4.1455 6.2864 -2.0196 11 1 3.0489 6.9548 -1.2740 12 1 5.2907 7.2214 -2.1588 13 1 3.6602 5.8934 -3.3669 14 6 4.8337 3.2006 1.3226 15 1 5.8694 3.3815 1.0348 16 6 4.2425 4.4753 1.9282 17 6 2.7888 4.2213 2.3320 18 6 2.7360 3.0939 3.3649 19 6 3.3271 1.8192 2.7594 20 1 2.7503 1.5335 1.8798 21 6 3.2745 0.7086 3.7766 22 8 4.2952 0.1749 4.1416 23 8 2.0938 0.3124 4.2773 24 6 2.1190 -0.7622 5.2534 25 6 4.7808 2.0732 2.3555 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 1.0224 -0.9387 34 1 3.9337 0.8404 0.8320 35 1 6.5519 5.4030 -0.7849 36 1 4.2801 5.2784 1.1922 37 1 4.8196 4.7613 2.8075 38 1 2.2119 3.9356 1.4524 39 1 2.3678 5.1293 2.7638 40 1 1.7003 2.9133 3.6530 41 1 3.3127 3.3797 4.2445 42 1 2.5595 -1.6518 4.8032 43 1 2.7146 -0.4577 6.1140 44 1 1.1016 -0.9843 5.5755 45 1 5.3573 2.3592 3.2353 46 1 5.2019 1.1651 1.9242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172632032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -72.673706 kcal Electronic energy + Delta-G solvation = -25065.446368 eV Core-core repulsion = 21762.742222 eV Total energy + Delta-G solvation = -3302.704146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55335 -38.61664 -36.22833 -35.02522 -33.81104 -31.44478 -30.47282 -29.44616 -27.77371 -27.04138 -24.31947 -23.13409 -22.54149 -20.95414 -20.30929 -20.18754 -18.94015 -17.22187 -16.50679 -16.21112 -15.96937 -15.20148 -14.78544 -14.26440 -13.87221 -13.76788 -13.65170 -13.32521 -13.26748 -12.84023 -12.46143 -12.20162 -12.00126 -11.89953 -11.76744 -11.48512 -11.17077 -11.03324 -10.89492 -10.70859 -10.67541 -10.60169 -10.50275 -10.35123 -10.22536 -10.06490 -10.01304 -9.58117 -9.46680 -9.27240 -9.16774 -8.38681 -6.58184 -5.59885 -3.24700 2.49189 2.96675 3.40068 3.46725 3.48172 4.53043 4.99422 5.11459 5.12826 5.17098 5.28012 5.33469 5.36372 5.43712 5.48785 5.56787 5.67679 5.79598 5.89171 5.97450 6.08225 6.13555 6.17956 6.20343 6.26480 6.30389 6.31497 6.34872 6.48521 6.53111 6.58583 6.62674 6.65893 6.70228 6.81264 6.97555 7.11949 7.18792 7.29615 7.55374 7.82170 7.91097 8.02021 8.50653 9.27902 9.90992 10.45192 11.32200 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.006555 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.166781 B = 4270.324829 C = 5039.810656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.146 4.146 4 C 0.132 3.868 5 N -0.584 5.584 6 C -0.246 4.246 7 H 0.063 0.937 8 C 0.011 3.989 9 N -0.892 5.892 10 Si 0.888 3.112 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.187 3.813 15 H 0.086 0.914 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.101 4.101 19 C -0.108 4.108 20 H 0.147 0.853 21 C 0.462 3.538 22 O -0.515 6.515 23 O -0.360 6.360 24 C 0.034 3.966 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 -7.176 8.261 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.185 4.185 4 C 0.005 3.995 5 N -0.306 5.306 6 C -0.376 4.376 7 H 0.080 0.920 8 C -0.189 4.189 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.210 1.210 14 C 0.082 3.918 15 H 0.103 0.897 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.139 4.139 19 C -0.126 4.126 20 H 0.164 0.836 21 C 0.306 3.694 22 O -0.402 6.402 23 O -0.277 6.277 24 C -0.060 4.060 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.130 -7.274 8.328 13.724 hybrid contribution -0.198 0.692 -0.225 0.754 sum -8.328 -6.582 8.103 13.354 Atomic orbital electron populations 1.21755 0.96512 1.00671 1.01672 1.21529 0.95304 0.98244 1.01203 1.22358 0.99380 0.94675 1.02121 1.21087 0.91408 0.88084 0.98882 1.43856 1.63017 1.04854 1.18894 1.18900 1.00185 1.05777 1.12691 0.91967 1.24979 0.94243 1.00566 0.99067 1.70017 1.02706 1.30413 1.50442 0.86607 0.77564 0.83870 0.80196 1.21098 1.21795 1.20987 1.20479 0.98419 0.89313 0.83610 0.89717 1.21722 0.93721 1.01144 0.98751 1.21447 0.99447 0.95599 0.98165 1.21460 0.99749 0.94022 0.98645 1.22065 1.02090 0.91295 0.97143 0.83636 1.24529 0.80860 0.83372 0.80640 1.90613 1.35409 1.55601 1.58613 1.86559 1.35051 1.51167 1.54917 1.23181 1.03159 0.88763 0.90942 1.21862 0.92165 1.00864 0.99844 0.92939 0.93578 0.92900 0.92378 0.92993 0.91617 0.91720 0.95310 0.92898 0.93830 0.90420 0.94661 0.90261 0.93649 0.92039 0.92770 0.92208 0.92287 0.88529 0.91958 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.15 -2.47 4.23 -26.73 -0.11 -2.59 16 4 C 0.13 2.60 4.78 -4.04 -0.02 2.58 16 5 N -0.58 -13.23 2.06 -165.66 -0.34 -13.58 16 6 C -0.25 -6.19 8.17 -15.06 -0.12 -6.31 16 7 H 0.06 1.58 7.09 -52.49 -0.37 1.20 16 8 C 0.01 0.28 3.57 -17.43 -0.06 0.22 16 9 N -0.89 -24.50 10.87 55.49 0.60 -23.90 16 10 Si 0.89 20.93 29.59 -169.99 -5.03 15.90 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.19 4.11 2.49 -67.93 -0.17 3.94 16 15 H 0.09 2.19 6.30 -51.93 -0.33 1.86 16 16 C -0.11 -2.38 4.99 -26.73 -0.13 -2.51 16 17 C -0.11 -1.96 5.75 -26.73 -0.15 -2.12 16 18 C -0.10 -1.62 5.13 -26.73 -0.14 -1.76 16 19 C -0.11 -1.84 1.92 -91.77 -0.18 -2.02 16 20 H 0.15 2.50 2.11 -51.93 -0.11 2.39 16 21 C 0.46 7.75 7.26 36.00 0.26 8.01 16 22 O -0.51 -9.73 15.73 -18.75 -0.29 -10.03 16 23 O -0.36 -5.23 10.47 -39.26 -0.41 -5.64 16 24 C 0.03 0.37 10.56 101.05 1.07 1.43 16 25 C -0.11 -2.10 3.46 -26.74 -0.09 -2.19 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.12 5.33 -51.93 -0.28 0.85 16 32 H 0.06 1.18 7.34 -51.93 -0.38 0.80 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 1.00 4.24 -51.93 -0.22 0.78 16 35 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.08 1.84 5.98 -51.93 -0.31 1.53 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.55 6.24 -51.93 -0.32 1.22 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.89 8.11 -51.92 -0.42 0.47 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.18 8.10 -51.92 -0.42 0.76 16 46 H 0.06 1.28 6.74 -51.93 -0.35 0.93 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -27.88 341.80 -7.69 -35.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.72 Total: 3.23 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 0.36 Total: -6.71 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.26 Total: -37.48 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.71 Total: -15.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.88 -7.69 -35.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172632032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.107 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds