Wall clock time and date at job start Tue Mar 31 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47079 * 2 1 4 4 C 1.34231 * 116.99906 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00207 * 180.27699 * 4 3 2 7 7 N 1.46895 * 109.47610 * 172.92547 * 6 4 3 8 8 C 1.46899 * 111.00272 * 284.26831 * 7 6 4 9 9 C 1.50703 * 109.47174 * 93.29109 * 8 7 6 10 10 H 1.07995 * 120.00332 * 5.64166 * 9 8 7 11 11 C 1.37881 * 119.99640 * 185.63330 * 9 8 7 12 12 N 1.31511 * 120.00279 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99830 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46744 * 60.00272 * 13 11 9 15 15 H 1.48495 * 109.47259 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47178 * 300.00801 * 13 11 9 17 17 C 1.46902 * 111.00374 * 160.30866 * 7 6 4 18 18 H 1.08997 * 110.01348 * 177.56147 * 17 7 6 19 19 C 1.54269 * 110.02948 * 56.12521 * 17 7 6 20 20 C 1.54889 * 104.19353 * 217.10803 * 19 17 7 21 21 C 1.54891 * 102.75183 * 37.93929 * 20 19 17 22 22 H 1.09000 * 110.59768 * 80.79352 * 21 20 19 23 23 C 1.52999 * 110.48572 * 203.38069 * 21 20 19 24 24 C 1.52992 * 109.47191 * 289.77470 * 23 21 20 25 25 C 1.53867 * 110.03340 * 298.95750 * 17 7 6 26 26 H 1.08999 * 109.46765 * 59.99598 * 1 2 3 27 27 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46716 * 299.99935 * 1 2 3 29 29 H 1.09003 * 109.46716 * 240.00065 * 2 1 3 30 30 H 1.08997 * 109.47108 * 119.99985 * 2 1 3 31 31 H 1.09000 * 109.47171 * 292.92775 * 6 4 3 32 32 H 1.08999 * 109.47155 * 52.92386 * 6 4 3 33 33 H 1.08997 * 109.47494 * 213.29249 * 8 7 6 34 34 H 1.09003 * 109.46636 * 333.29407 * 8 7 6 35 35 H 0.96998 * 120.00426 * 179.97438 * 12 11 9 36 36 H 1.09006 * 110.48296 * 335.78412 * 19 17 7 37 37 H 1.08994 * 110.48870 * 98.42309 * 19 17 7 38 38 H 1.08998 * 110.75045 * 279.62452 * 20 19 17 39 39 H 1.08992 * 110.91503 * 156.33094 * 20 19 17 40 40 H 1.09002 * 109.46909 * 49.77863 * 23 21 20 41 41 H 1.09009 * 109.46661 * 169.77340 * 23 21 20 42 42 H 1.09002 * 109.47515 * 300.00022 * 24 23 21 43 43 H 1.08995 * 109.47383 * 60.00232 * 24 23 21 44 44 H 1.09000 * 109.47195 * 180.02562 * 24 23 21 45 45 H 1.08999 * 110.03328 * 238.56671 * 25 17 7 46 46 H 1.09008 * 110.03092 * 359.94953 * 25 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0057 7 7 5.3782 2.8637 0.1744 8 6 5.7322 2.5561 1.5665 9 6 5.8968 1.0665 1.7256 10 1 5.8430 0.4218 0.8609 11 6 6.1163 0.5268 2.9753 12 7 6.1815 1.3118 4.0284 13 14 6.3210 -1.3194 3.1725 14 1 7.4872 -1.7761 2.3746 15 1 6.5433 -1.6427 4.6047 16 1 5.0947 -2.0073 2.6948 17 6 6.0232 4.1062 -0.2706 18 1 7.0981 4.0509 -0.0986 19 6 5.4272 5.3113 0.4861 20 6 5.3806 6.4399 -0.5737 21 6 4.9815 5.6812 -1.8638 22 1 3.9054 5.5095 -1.8903 23 6 5.4289 6.4594 -3.1027 24 6 4.5771 7.7220 -3.2471 25 6 5.7398 4.3415 -1.7646 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6888 3.4308 -0.9381 32 1 3.4881 3.5058 0.8289 33 1 6.6673 3.0543 1.8222 34 1 4.9407 2.9070 2.2287 35 1 6.3355 0.9321 4.9076 36 1 4.4230 5.0798 0.8414 37 1 6.0712 5.5956 1.3182 38 1 6.3600 6.9047 -0.6862 39 1 4.6284 7.1852 -0.3155 40 1 6.4774 6.7385 -2.9974 41 1 5.3063 5.8350 -3.9878 42 1 3.5286 7.4429 -3.3524 43 1 4.6997 8.3463 -2.3622 44 1 4.8955 8.2761 -4.1301 45 1 6.6772 4.4012 -2.3175 46 1 5.1244 3.5331 -2.1597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173296492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:08 Heat of formation + Delta-G solvation = -92.965761 kcal Electronic energy + Delta-G solvation = -23803.956698 eV Core-core repulsion = 20500.372623 eV Total energy + Delta-G solvation = -3303.584075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85612 -38.89459 -36.18000 -35.10176 -32.68841 -31.81158 -31.35743 -28.64051 -28.10613 -27.19711 -24.67567 -22.98206 -22.50598 -21.66462 -20.65518 -19.69448 -18.56617 -17.07739 -16.28285 -16.17034 -15.75796 -15.49977 -14.75012 -14.45206 -14.29932 -14.09091 -13.65100 -13.29940 -13.08863 -12.77678 -12.56586 -12.43348 -12.22508 -12.00458 -11.90794 -11.46335 -11.26743 -11.22081 -11.13682 -11.04155 -10.93822 -10.60318 -10.47261 -10.40510 -10.31233 -10.26851 -10.14430 -10.02527 -9.80968 -9.31145 -8.77391 -8.23174 -7.31119 -5.84625 -3.80081 3.14476 3.27901 3.45941 3.47412 3.54357 4.55618 4.68584 4.80248 4.85057 5.04805 5.18191 5.21790 5.23539 5.31290 5.42735 5.44062 5.49732 5.59381 5.65302 5.70079 5.73460 5.75564 5.82180 5.91090 5.92639 5.94859 5.99506 6.02067 6.04121 6.09626 6.14451 6.20292 6.23205 6.32619 6.54452 6.59705 6.71355 7.07743 7.17507 7.30042 7.99818 8.06827 8.25090 8.64443 8.76650 9.41886 9.82258 11.26156 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.005704 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.119023 B = 4907.743730 C = 6457.217364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.377 6.377 4 C 0.444 3.556 5 O -0.444 6.444 6 C 0.076 3.924 7 N -0.516 5.516 8 C 0.191 3.809 9 C -0.484 4.484 10 H 0.089 0.911 11 C 0.046 3.954 12 N -0.912 5.912 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.280 1.280 17 C 0.088 3.912 18 H 0.085 0.915 19 C -0.160 4.160 20 C -0.114 4.114 21 C -0.096 4.096 22 H 0.071 0.929 23 C -0.115 4.115 24 C -0.152 4.152 25 C -0.117 4.117 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.002 0.998 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 8.879 -11.909 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.296 6.296 4 C 0.283 3.717 5 O -0.325 6.325 6 C -0.054 4.054 7 N -0.240 5.240 8 C 0.066 3.934 9 C -0.523 4.523 10 H 0.107 0.893 11 C -0.153 4.153 12 N -0.554 5.554 13 Si 0.725 3.275 14 H -0.204 1.204 15 H -0.219 1.219 16 H -0.205 1.205 17 C -0.021 4.021 18 H 0.103 0.897 19 C -0.199 4.199 20 C -0.152 4.152 21 C -0.114 4.114 22 H 0.089 0.911 23 C -0.153 4.153 24 C -0.209 4.209 25 C -0.155 4.155 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.020 0.980 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.099 8.109 -12.005 16.133 hybrid contribution -0.165 -0.532 0.959 1.109 sum -7.264 7.578 -11.046 15.238 Atomic orbital electron populations 1.21772 0.93489 1.02324 1.03024 1.22813 0.94466 0.81422 1.02357 1.86432 1.26063 1.31342 1.85727 1.23635 0.79708 0.93501 0.74855 1.90708 1.58958 1.42474 1.40381 1.21420 0.91341 0.90080 1.02537 1.62007 1.03905 1.30459 1.27662 1.19899 0.95665 0.97644 0.80150 1.21651 1.45043 0.91929 0.93657 0.89330 1.25000 0.96474 0.97786 0.96029 1.69963 1.52052 1.34674 0.98699 0.86584 0.78622 0.86177 0.76130 1.20390 1.21870 1.20543 1.22401 0.99146 0.87320 0.93253 0.89668 1.23128 1.01826 0.96459 0.98481 1.22491 1.00859 0.97142 0.94677 1.22091 0.99772 0.95169 0.94404 0.91097 1.21556 0.99639 0.96347 0.97736 1.21782 0.99977 0.97898 1.01252 1.22351 1.00393 0.96346 0.96431 0.91919 0.90841 0.91720 0.91894 0.91415 0.88557 0.91881 0.95901 0.98028 0.93375 0.91401 0.91587 0.91689 0.92204 0.92019 0.92217 0.92933 0.92687 0.93234 0.91632 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 37.16 0.38 -1.32 16 2 C 0.06 1.00 6.19 37.16 0.23 1.23 16 3 O -0.38 -6.87 10.22 -39.26 -0.40 -7.27 16 4 C 0.44 9.28 7.66 36.00 0.28 9.56 16 5 O -0.44 -10.92 12.32 -18.75 -0.23 -11.15 16 6 C 0.08 1.41 4.31 -4.98 -0.02 1.39 16 7 N -0.52 -10.84 3.98 -228.19 -0.91 -11.75 16 8 C 0.19 4.94 4.29 -4.97 -0.02 4.92 16 9 C -0.48 -14.11 7.63 -34.44 -0.26 -14.37 16 10 H 0.09 2.69 5.66 -52.49 -0.30 2.39 16 11 C 0.05 1.36 5.46 -17.82 -0.10 1.26 16 12 N -0.91 -27.94 13.29 55.43 0.74 -27.20 16 13 Si 0.90 23.30 29.54 -169.99 -5.02 18.28 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 17 C 0.09 1.49 2.84 -66.60 -0.19 1.30 16 18 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 19 C -0.16 -2.41 5.69 -25.07 -0.14 -2.55 16 20 C -0.11 -1.35 5.67 -24.74 -0.14 -1.49 16 21 C -0.10 -1.10 2.68 -88.96 -0.24 -1.33 16 22 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 23 C -0.12 -1.12 5.28 -26.74 -0.14 -1.26 16 24 C -0.15 -1.31 9.79 37.15 0.36 -0.95 16 25 C -0.12 -1.62 5.33 -25.62 -0.14 -1.75 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.10 1.50 5.65 -51.93 -0.29 1.21 16 32 H 0.06 1.17 6.27 -51.93 -0.33 0.85 16 33 H 0.02 0.62 7.55 -51.93 -0.39 0.23 16 34 H 0.00 0.05 7.42 -51.93 -0.39 -0.33 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.07 5.85 -51.93 -0.30 0.77 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.74 7.97 -51.93 -0.41 0.32 16 39 H 0.06 0.65 8.05 -51.93 -0.42 0.24 16 40 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 41 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.47 7.55 -51.93 -0.39 0.08 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 46 H 0.07 1.06 6.67 -51.92 -0.35 0.72 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -32.38 355.62 -8.75 -41.14 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.15 Total: -2.01 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.14 Total: -5.38 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.17 Total: -38.95 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.63 Total: -18.43 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.38 -8.75 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173296492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.830 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds