Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47363 * 2 1 4 4 C 1.34229 * 117.00174 * 184.69532 * 3 2 1 5 5 O 1.20820 * 120.00185 * 5.19274 * 4 3 2 6 6 C 1.50704 * 119.99916 * 185.19269 * 4 3 2 7 7 N 1.46896 * 109.47118 * 184.39607 * 6 4 3 8 8 C 1.46899 * 111.00070 * 293.39993 * 7 6 4 9 9 C 1.50700 * 109.47165 * 179.35745 * 8 7 6 10 10 H 1.08000 * 120.00679 * 114.10176 * 9 8 7 11 11 C 1.37886 * 119.99629 * 294.10122 * 9 8 7 12 12 N 1.31519 * 119.99631 * 203.10850 * 11 9 8 13 13 Si 1.86797 * 120.00136 * 23.10612 * 11 9 8 14 14 H 1.48501 * 109.46799 * 84.10583 * 13 11 9 15 15 H 1.48497 * 109.46977 * 204.10169 * 13 11 9 16 16 H 1.48496 * 109.47292 * 324.10534 * 13 11 9 17 17 C 1.46896 * 111.00060 * 169.44640 * 7 6 4 18 18 H 1.09000 * 110.01904 * 80.70492 * 17 7 6 19 19 C 1.53876 * 110.03176 * 202.09859 * 17 7 6 20 20 C 1.54267 * 106.60079 * 119.28685 * 19 17 7 21 21 C 1.54885 * 104.19582 * 23.60784 * 20 19 17 22 22 H 1.08996 * 110.75737 * 80.37616 * 21 20 19 23 23 C 1.53002 * 110.75362 * 203.56205 * 21 20 19 24 24 C 1.52999 * 109.47044 * 293.54460 * 23 21 20 25 25 C 1.54274 * 110.03302 * 319.26072 * 17 7 6 26 26 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46842 * 300.00148 * 1 2 3 28 28 H 1.09002 * 109.47300 * 59.99665 * 1 2 3 29 29 H 1.08995 * 109.47158 * 240.00090 * 2 1 3 30 30 H 1.08998 * 109.47503 * 119.99879 * 2 1 3 31 31 H 1.08997 * 109.47169 * 64.39798 * 6 4 3 32 32 H 1.08998 * 109.47287 * 304.39897 * 6 4 3 33 33 H 1.08999 * 109.47373 * 59.35589 * 8 7 6 34 34 H 1.09002 * 109.47471 * 299.35420 * 8 7 6 35 35 H 0.96996 * 119.99531 * 174.99882 * 12 11 9 36 36 H 1.09006 * 110.03008 * 238.56686 * 19 17 7 37 37 H 1.09000 * 110.03402 * 359.97438 * 19 17 7 38 38 H 1.09001 * 110.48646 * 142.28556 * 20 19 17 39 39 H 1.09002 * 110.48069 * 264.92729 * 20 19 17 40 40 H 1.09008 * 109.47162 * 53.54453 * 23 21 20 41 41 H 1.08999 * 109.46838 * 173.54345 * 23 21 20 42 42 H 1.09002 * 109.46936 * 60.00413 * 24 23 21 43 43 H 1.09006 * 109.46894 * 180.02562 * 24 23 21 44 44 H 1.08994 * 109.47292 * 300.00065 * 24 23 21 45 45 H 1.08997 * 110.48067 * 335.78754 * 25 17 7 46 46 H 1.09000 * 110.48350 * 98.42635 * 25 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3409 1.5461 -0.0979 5 8 4.0659 0.5960 -0.2751 6 6 3.9265 2.9303 0.0132 7 7 5.3739 2.8707 -0.2308 8 6 6.0575 2.1278 0.8363 9 6 7.5349 2.0743 0.5441 10 1 8.2327 2.5817 1.1938 11 6 7.9959 1.3775 -0.5528 12 7 9.2354 0.9388 -0.5797 13 14 6.8598 1.0567 -2.0005 14 1 6.8629 2.2360 -2.9029 15 1 7.3326 -0.1378 -2.7454 16 1 5.4810 0.8168 -1.5041 17 6 5.9387 4.2186 -0.3790 18 1 6.1014 4.6649 0.6021 19 6 7.2661 4.1515 -1.1543 20 6 7.0743 4.9966 -2.4306 21 6 5.9333 5.9792 -2.0676 22 1 6.3159 6.8172 -1.4850 23 6 5.2247 6.4770 -3.3289 24 6 6.1887 7.3354 -4.1503 25 6 4.9864 5.1021 -1.2112 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7425 3.3235 1.0130 32 1 3.4601 3.5825 -0.7252 33 1 5.6599 1.1141 0.8856 34 1 5.8938 2.6290 1.7903 35 1 9.5386 0.3871 -1.3176 36 1 8.0730 4.5661 -0.5498 37 1 7.4915 3.1188 -1.4203 38 1 7.9873 5.5430 -2.6672 39 1 6.7802 4.3627 -3.2671 40 1 4.9006 5.6234 -3.9245 41 1 4.3572 7.0735 -3.0468 42 1 7.0562 6.7388 -4.4324 43 1 5.6837 7.6904 -5.0487 44 1 6.5128 8.1888 -3.5548 45 1 4.3552 4.4852 -1.8508 46 1 4.3758 5.7254 -0.5580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173296493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = -67.805400 kcal Electronic energy + Delta-G solvation = -24357.478130 eV Core-core repulsion = 21054.985090 eV Total energy + Delta-G solvation = -3302.493040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14241 -38.73277 -36.50123 -35.28474 -32.58777 -32.07344 -31.62960 -29.19086 -27.69735 -26.93338 -24.88577 -23.01480 -22.42487 -21.40145 -20.45817 -19.44614 -18.95786 -17.22938 -16.62574 -16.35420 -15.93920 -15.36643 -14.97785 -14.54243 -14.12561 -13.88835 -13.72634 -13.49502 -13.20319 -12.86116 -12.71837 -12.58624 -12.34354 -12.03232 -11.79121 -11.66909 -11.43193 -11.35186 -11.08567 -10.99149 -10.54138 -10.39625 -10.31199 -10.16558 -10.15548 -9.90409 -9.77598 -9.72448 -9.35449 -9.03616 -8.87820 -8.16740 -7.19141 -5.96998 -3.93403 2.71955 2.94391 3.69486 3.76936 4.12474 4.68990 4.84994 4.94619 4.95482 4.98293 5.06238 5.14264 5.18030 5.31879 5.44056 5.48446 5.53163 5.64281 5.67454 5.70207 5.75653 5.76614 5.89819 5.91927 5.99631 6.09433 6.11591 6.16156 6.19147 6.28399 6.42028 6.47589 6.63304 6.69347 6.76330 6.80682 6.89065 7.08260 7.19282 7.59984 7.82200 8.06577 8.09176 8.36154 8.63580 9.05191 9.70125 11.07740 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.007242 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.820045 B = 3865.609057 C = 5270.149181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.372 6.372 4 C 0.444 3.556 5 O -0.462 6.462 6 C 0.053 3.947 7 N -0.523 5.523 8 C 0.151 3.849 9 C -0.534 4.534 10 H 0.065 0.935 11 C 0.091 3.909 12 N -0.887 5.887 13 Si 0.860 3.140 14 H -0.277 1.277 15 H -0.331 1.331 16 H -0.183 1.183 17 C 0.107 3.893 18 H 0.039 0.961 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.091 4.091 22 H 0.070 0.930 23 C -0.114 4.114 24 C -0.151 4.151 25 C -0.127 4.127 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.057 0.943 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 7.270 -2.586 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.290 6.290 4 C 0.285 3.715 5 O -0.346 6.346 6 C -0.076 4.076 7 N -0.252 5.252 8 C 0.027 3.973 9 C -0.572 4.572 10 H 0.083 0.917 11 C -0.114 4.114 12 N -0.522 5.522 13 Si 0.691 3.309 14 H -0.204 1.204 15 H -0.262 1.262 16 H -0.106 1.106 17 C -0.001 4.001 18 H 0.057 0.943 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.110 4.110 22 H 0.089 0.911 23 C -0.152 4.152 24 C -0.208 4.208 25 C -0.165 4.165 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.431 6.650 -3.159 16.200 hybrid contribution -0.346 0.106 -0.086 0.372 sum -14.777 6.757 -3.245 16.569 Atomic orbital electron populations 1.21780 0.93161 1.02552 1.03195 1.22891 0.94818 0.81089 1.02470 1.86467 1.26003 1.31651 1.84883 1.23992 0.79819 0.93516 0.74141 1.90788 1.59278 1.43406 1.41093 1.21712 0.93493 0.90211 1.02185 1.62757 0.97991 1.15480 1.48949 1.20531 0.95093 0.94697 0.86936 1.20645 0.89357 1.35333 1.11831 0.91719 1.25054 0.94760 0.92775 0.98830 1.70048 1.18266 1.31997 1.31845 0.87434 0.87174 0.74896 0.81446 1.20392 1.26182 1.10603 1.21918 0.94398 0.86813 0.96929 0.94284 1.22710 0.95325 1.03442 0.93714 1.22590 0.96924 0.97016 0.99633 1.22099 0.96160 0.97360 0.95351 0.91132 1.21509 0.97955 0.99293 0.96446 1.21768 0.99892 0.99780 0.99375 1.22774 0.97838 0.97464 0.98426 0.90627 0.91678 0.91736 0.91419 0.91567 0.91867 0.87633 0.92543 0.98611 0.92773 0.92554 0.87017 0.92814 0.92218 0.92156 0.92590 0.92476 0.93381 0.93028 0.90921 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.15 0.38 -0.99 16 2 C 0.06 0.79 6.28 37.15 0.23 1.03 16 3 O -0.37 -5.75 10.22 -39.25 -0.40 -6.15 16 4 C 0.44 8.13 7.75 36.01 0.28 8.41 16 5 O -0.46 -10.14 10.70 -18.75 -0.20 -10.34 16 6 C 0.05 0.90 5.14 -4.98 -0.03 0.87 16 7 N -0.52 -10.96 1.59 -228.18 -0.36 -11.32 16 8 C 0.15 3.65 4.14 -4.98 -0.02 3.63 16 9 C -0.53 -15.03 7.43 -34.44 -0.26 -15.28 16 10 H 0.06 1.98 8.06 -52.49 -0.42 1.56 16 11 C 0.09 2.66 4.46 -17.81 -0.08 2.58 16 12 N -0.89 -27.51 13.95 55.43 0.77 -26.73 16 13 Si 0.86 22.64 23.95 -169.99 -4.07 18.57 16 14 H -0.28 -7.04 5.57 56.52 0.31 -6.72 16 15 H -0.33 -9.27 7.11 56.52 0.40 -8.86 16 16 H -0.18 -4.67 3.08 56.52 0.17 -4.49 16 17 C 0.11 2.06 2.64 -66.59 -0.18 1.89 16 18 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 19 C -0.11 -2.47 4.48 -25.61 -0.11 -2.58 16 20 C -0.12 -2.22 5.39 -25.07 -0.14 -2.35 16 21 C -0.09 -1.33 2.92 -88.63 -0.26 -1.59 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 C -0.11 -1.43 5.45 -26.73 -0.15 -1.58 16 24 C -0.15 -1.72 9.76 37.16 0.36 -1.35 16 25 C -0.13 -1.95 4.48 -25.07 -0.11 -2.06 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.11 1.56 5.46 -51.93 -0.28 1.27 16 33 H 0.06 1.45 5.66 -51.93 -0.29 1.16 16 34 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.26 7.81 8.32 -40.82 -0.34 7.48 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.11 2.80 1.43 -51.93 -0.07 2.72 16 38 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 39 H 0.06 1.14 7.17 -51.93 -0.37 0.77 16 40 H 0.06 0.79 8.10 -51.92 -0.42 0.37 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.69 7.40 -51.93 -0.38 0.31 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.13 6.42 -51.93 -0.33 0.79 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -32.01 336.43 -7.61 -39.62 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.35 Total: 0.66 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.07 Total: -9.37 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.41 Total: -38.06 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.60 Total: -16.49 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.07 Total: 18.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.01 -7.61 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173296493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.182 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds