Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47014 * 2 1 4 4 C 1.34228 * 117.00160 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99992 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00093 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47105 * 185.83596 * 6 4 3 8 8 C 1.46899 * 110.99920 * 210.01133 * 7 6 4 9 9 C 1.50695 * 109.47684 * 72.02088 * 8 7 6 10 10 H 1.08002 * 119.99820 * 355.10966 * 9 8 7 11 11 C 1.37874 * 120.00636 * 175.11101 * 9 8 7 12 12 N 1.31522 * 119.99774 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00263 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47371 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46973 * 120.00095 * 13 11 9 16 16 H 1.48505 * 109.46702 * 239.99626 * 13 11 9 17 17 C 1.46896 * 110.99743 * 86.05674 * 7 6 4 18 18 H 1.09002 * 110.81220 * 184.85962 * 17 7 6 19 19 C 1.55232 * 110.90104 * 61.41080 * 17 7 6 20 20 C 1.54268 * 104.23226 * 203.79348 * 19 17 7 21 21 C 1.53869 * 106.59722 * 23.60703 * 20 19 17 22 22 H 1.09003 * 110.03457 * 240.71175 * 21 20 19 23 23 C 1.53006 * 110.07076 * 119.31024 * 21 20 19 24 24 C 1.53000 * 109.47272 * 67.80330 * 23 21 20 25 25 C 1.54260 * 106.60209 * 0.02562 * 21 20 19 26 26 H 1.09009 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47102 * 300.00124 * 1 2 3 28 28 H 1.08995 * 109.47332 * 60.00326 * 1 2 3 29 29 H 1.08998 * 109.47371 * 239.99965 * 2 1 3 30 30 H 1.09005 * 109.46875 * 119.99885 * 2 1 3 31 31 H 1.09009 * 109.46602 * 65.83978 * 6 4 3 32 32 H 1.08995 * 109.47451 * 305.84140 * 6 4 3 33 33 H 1.09006 * 109.46788 * 192.02098 * 8 7 6 34 34 H 1.09002 * 109.47239 * 312.01698 * 8 7 6 35 35 H 0.96994 * 119.99915 * 180.02562 * 12 11 9 36 36 H 1.09001 * 110.46963 * 85.10232 * 19 17 7 37 37 H 1.08995 * 110.58329 * 322.53922 * 19 17 7 38 38 H 1.09006 * 110.03068 * 264.32552 * 20 19 17 39 39 H 1.08996 * 110.03068 * 142.90055 * 20 19 17 40 40 H 1.08994 * 109.47421 * 187.80967 * 23 21 20 41 41 H 1.09003 * 109.46723 * 307.81039 * 23 21 20 42 42 H 1.08999 * 109.47157 * 179.97438 * 24 23 21 43 43 H 1.08994 * 109.47417 * 300.00639 * 24 23 21 44 44 H 1.09011 * 109.46809 * 60.00312 * 24 23 21 45 45 H 1.09006 * 110.48641 * 95.06355 * 25 21 20 46 46 H 1.08996 * 110.48866 * 217.57862 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3811 2.8633 -0.1401 8 6 6.0325 3.9956 0.5317 9 6 5.9360 3.8171 2.0249 10 1 5.3727 2.9917 2.4348 11 6 6.5667 4.7073 2.8680 12 7 7.2530 5.7121 2.3690 13 14 6.4475 4.4854 4.7189 14 1 5.6244 3.2872 5.0219 15 1 7.8089 4.3074 5.2847 16 1 5.8141 5.6859 5.3215 17 6 5.7714 2.7950 -1.5546 18 1 6.8478 2.6540 -1.6530 19 6 5.3106 4.0655 -2.3182 20 6 5.2185 3.6111 -3.7896 21 6 5.0218 2.0852 -3.7669 22 1 5.8475 1.5945 -4.2823 23 6 3.6952 1.7169 -4.4343 24 6 3.7746 2.0240 -5.9311 25 6 5.0005 1.6656 -2.2827 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.6703 3.4345 0.9373 32 1 3.5039 3.5027 -0.8336 33 1 7.0814 4.0378 0.2379 34 1 5.5370 4.9229 0.2439 35 1 7.6970 6.3381 2.9620 36 1 6.0461 4.8627 -2.2105 37 1 4.3359 4.3959 -1.9594 38 1 6.1399 3.8610 -4.3159 39 1 4.3687 4.0901 -4.2758 40 1 3.4992 0.6543 -4.2913 41 1 2.8894 2.2985 -3.9864 42 1 2.8297 1.7612 -6.4066 43 1 3.9706 3.0866 -6.0741 44 1 4.5805 1.4425 -6.3790 45 1 3.9751 1.6062 -1.9177 46 1 5.5080 0.7103 -2.1490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173296494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = -97.084149 kcal Electronic energy + Delta-G solvation = -23952.917120 eV Core-core repulsion = 20649.154458 eV Total energy + Delta-G solvation = -3303.762662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31499 -38.76086 -36.29882 -35.44965 -32.81919 -31.87737 -31.54108 -28.66701 -28.00322 -27.25456 -24.91231 -23.12279 -22.63771 -21.66479 -20.83561 -19.44391 -18.65285 -17.18076 -16.77022 -16.18646 -15.98797 -15.61068 -15.07925 -14.69077 -14.25383 -13.78583 -13.65358 -13.39685 -13.08552 -13.03025 -12.80793 -12.49921 -12.20634 -11.85816 -11.81986 -11.72634 -11.44482 -11.31316 -11.18622 -11.10929 -10.96810 -10.63402 -10.57767 -10.47796 -10.33533 -10.25661 -10.12366 -10.05372 -9.83309 -9.67514 -9.21677 -8.45783 -7.28302 -6.04709 -4.06308 2.81311 3.00963 3.31017 3.38830 3.44596 4.40895 4.67205 4.83832 4.87800 4.96803 5.00992 5.13702 5.23316 5.26714 5.31570 5.32438 5.36493 5.43319 5.65784 5.72304 5.72850 5.78473 5.79471 5.83432 5.90123 5.95403 5.96252 5.99996 6.02613 6.10246 6.18489 6.28141 6.29120 6.40568 6.57913 6.66845 6.79023 6.85759 7.15210 7.24885 7.78656 7.97259 8.11291 8.39376 8.49827 9.01463 9.58423 11.05575 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.005794 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.918995 B = 4831.621403 C = 6561.197273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.460 3.540 5 O -0.488 6.488 6 C 0.064 3.936 7 N -0.512 5.512 8 C 0.198 3.802 9 C -0.510 4.510 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.085 3.915 18 H 0.088 0.912 19 C -0.161 4.161 20 C -0.114 4.114 21 C -0.095 4.095 22 H 0.068 0.932 23 C -0.115 4.115 24 C -0.151 4.151 25 C -0.111 4.111 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.039 0.961 34 H -0.004 1.004 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -6.922 -12.204 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.302 3.698 5 O -0.373 6.373 6 C -0.066 4.066 7 N -0.235 5.235 8 C 0.074 3.926 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.024 4.024 18 H 0.106 0.894 19 C -0.200 4.200 20 C -0.152 4.152 21 C -0.114 4.114 22 H 0.087 0.913 23 C -0.153 4.153 24 C -0.209 4.209 25 C -0.149 4.149 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.108 -7.527 -11.894 17.329 hybrid contribution -0.169 0.519 0.662 0.858 sum -10.277 -7.008 -11.232 16.760 Atomic orbital electron populations 1.21786 0.93177 1.02478 1.03344 1.22870 0.94872 0.81280 1.02202 1.86523 1.25835 1.31464 1.85002 1.24142 0.79628 0.93840 0.72163 1.90630 1.59928 1.42809 1.43927 1.21615 0.91329 0.88900 1.04733 1.61750 1.03437 1.47561 1.10727 1.19766 0.94336 0.84895 0.93635 1.21218 1.32047 1.11028 0.90551 0.91916 1.24954 0.95198 0.95162 0.99040 1.69960 1.33635 1.15046 1.35029 0.86464 0.77891 0.77981 0.85260 1.19667 1.20971 1.21078 1.22828 0.99693 0.92629 0.87268 0.89418 1.23112 1.01772 0.99855 0.95245 1.22144 1.01087 0.95078 0.96908 1.21847 0.97184 0.96001 0.96410 0.91345 1.21598 0.97443 1.00981 0.95271 1.21803 1.01116 1.01675 0.96265 1.22682 1.00385 0.98980 0.92824 0.90703 0.91549 0.91712 0.91767 0.91555 0.86187 0.91103 0.94314 0.98637 0.92933 0.91335 0.91619 0.92206 0.92151 0.92406 0.92172 0.93214 0.92595 0.92959 0.92108 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -5.94 10.22 -39.25 -0.40 -6.34 16 4 C 0.46 8.57 5.67 36.01 0.20 8.77 16 5 O -0.49 -10.19 14.38 -18.75 -0.27 -10.46 16 6 C 0.06 1.22 4.83 -4.97 -0.02 1.20 16 7 N -0.51 -11.00 4.02 -226.90 -0.91 -11.92 16 8 C 0.20 4.97 4.15 -4.98 -0.02 4.95 16 9 C -0.51 -14.13 8.37 -34.44 -0.29 -14.42 16 10 H 0.06 1.77 7.70 -52.49 -0.40 1.36 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 13 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.09 1.55 3.03 -65.52 -0.20 1.35 16 18 H 0.09 1.66 8.13 -51.93 -0.42 1.23 16 19 C -0.16 -2.57 5.31 -24.89 -0.13 -2.70 16 20 C -0.11 -1.49 5.96 -25.62 -0.15 -1.64 16 21 C -0.10 -1.25 2.93 -89.50 -0.26 -1.51 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 23 C -0.12 -1.32 5.06 -26.73 -0.14 -1.46 16 24 C -0.15 -1.46 9.74 37.16 0.36 -1.10 16 25 C -0.11 -1.79 4.28 -25.06 -0.11 -1.90 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.12 2.44 7.00 -51.92 -0.36 2.08 16 32 H 0.07 1.21 5.48 -51.93 -0.28 0.93 16 33 H 0.04 1.05 7.99 -51.93 -0.41 0.64 16 34 H 0.00 -0.11 7.73 -51.93 -0.40 -0.51 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.06 5.86 -51.93 -0.30 0.76 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.73 6.87 -51.93 -0.36 0.37 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.53 7.00 -51.93 -0.36 0.17 16 44 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.06 1.02 4.09 -51.93 -0.21 0.80 16 46 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -30.23 355.94 -8.90 -39.13 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.15 Total: -0.03 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.24 Total: -6.94 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.18 Total: -37.32 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.67 Total: -16.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.23 -8.90 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173296494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.953 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds