Wall clock time and date at job start Tue Mar 31 2020 06:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47213 * 2 1 4 4 C 1.34233 * 116.99645 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00161 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99857 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47128 * 172.81489 * 6 4 3 8 8 C 1.46900 * 111.00072 * 140.82379 * 7 6 4 9 9 C 1.50706 * 109.46485 * 287.91528 * 8 7 6 10 10 H 1.07993 * 120.00127 * 4.47574 * 9 8 7 11 11 C 1.37879 * 119.99646 * 184.47476 * 9 8 7 12 12 N 1.31513 * 120.00248 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00143 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47140 * 89.99709 * 13 11 9 15 15 H 1.48498 * 109.47348 * 210.00026 * 13 11 9 16 16 H 1.48502 * 109.47018 * 330.00136 * 13 11 9 17 17 C 1.46907 * 110.99916 * 264.77168 * 7 6 4 18 18 H 1.08995 * 110.01931 * 179.04194 * 17 7 6 19 19 C 1.54270 * 110.03395 * 300.43567 * 17 7 6 20 20 C 1.54888 * 104.19704 * 142.94171 * 19 17 7 21 21 C 1.54888 * 102.74818 * 322.05719 * 20 19 17 22 22 H 1.08994 * 110.48710 * 279.26346 * 21 20 19 23 23 C 1.53005 * 110.48635 * 156.75005 * 21 20 19 24 24 C 1.53000 * 109.46955 * 66.45667 * 23 21 20 25 25 C 1.53878 * 110.03044 * 57.65048 * 17 7 6 26 26 H 1.08996 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46584 * 299.99637 * 1 2 3 28 28 H 1.08996 * 109.47543 * 59.99416 * 1 2 3 29 29 H 1.09008 * 109.46584 * 240.00363 * 2 1 3 30 30 H 1.08996 * 109.47543 * 120.00584 * 2 1 3 31 31 H 1.09000 * 109.46783 * 52.81501 * 6 4 3 32 32 H 1.08996 * 109.47360 * 292.82167 * 6 4 3 33 33 H 1.08994 * 109.47228 * 47.91242 * 8 7 6 34 34 H 1.09000 * 109.47553 * 167.91728 * 8 7 6 35 35 H 0.96990 * 120.00622 * 180.02562 * 12 11 9 36 36 H 1.08997 * 110.48125 * 261.61918 * 19 17 7 37 37 H 1.09000 * 110.48473 * 24.26601 * 19 17 7 38 38 H 1.09000 * 110.75562 * 80.37078 * 20 19 17 39 39 H 1.08997 * 110.75760 * 203.55443 * 20 19 17 40 40 H 1.09000 * 109.46965 * 186.45072 * 23 21 20 41 41 H 1.08994 * 109.47289 * 306.45527 * 23 21 20 42 42 H 1.09011 * 109.46722 * 299.99989 * 24 23 21 43 43 H 1.08995 * 109.47644 * 59.99479 * 24 23 21 44 44 H 1.08997 * 109.47281 * 180.02562 * 24 23 21 45 45 H 1.08994 * 110.03262 * 359.95274 * 25 17 7 46 46 H 1.09001 * 110.02814 * 121.37743 * 25 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 7 5.3779 2.8645 0.1716 8 6 6.0581 3.8574 -0.6708 9 6 5.9779 3.4309 -2.1140 10 1 5.4111 2.5532 -2.3870 11 6 6.6283 4.1614 -3.0858 12 7 6.5580 3.7897 -4.3453 13 14 7.6093 5.6793 -2.6134 14 1 9.0118 5.2902 -2.3184 15 1 7.5908 6.6501 -3.7369 16 1 7.0053 6.3041 -1.4093 17 6 5.7495 3.0288 1.5833 18 1 6.8312 2.9553 1.6954 19 6 5.2558 4.3944 2.1043 20 6 4.8138 4.1080 3.5609 21 6 4.1661 2.7053 3.4520 22 1 3.1458 2.7843 3.0770 23 6 4.1830 2.0007 4.8101 24 6 3.2677 2.7468 5.7830 25 6 5.0567 1.9540 2.4393 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.4861 3.5106 0.8176 32 1 3.6912 3.4251 -0.9484 33 1 5.5753 4.8272 -0.5511 34 1 7.1036 3.9325 -0.3716 35 1 7.0158 4.3033 -5.0289 36 1 6.0652 5.1242 2.0877 37 1 4.4114 4.7461 1.5116 38 1 5.6751 4.0850 4.2285 39 1 4.0866 4.8474 3.8964 40 1 3.8301 0.9762 4.6923 41 1 5.2000 1.9919 5.2022 42 1 3.6207 3.7714 5.9008 43 1 2.2508 2.7557 5.3910 44 1 3.2801 2.2452 6.7507 45 1 4.4441 1.3111 1.8073 46 1 5.8022 1.3589 2.9666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173296495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:21 Heat of formation + Delta-G solvation = -92.397365 kcal Electronic energy + Delta-G solvation = -23999.540562 eV Core-core repulsion = 20695.981134 eV Total energy + Delta-G solvation = -3303.559428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30787 -38.91057 -36.27801 -35.50200 -32.79831 -31.90538 -31.55791 -28.88310 -28.27203 -27.56847 -24.95412 -23.07977 -22.60472 -21.30391 -20.86875 -19.75983 -18.72255 -17.19609 -17.05796 -16.40633 -15.88538 -15.57984 -15.06405 -14.64201 -14.33054 -13.95810 -13.69368 -13.48626 -13.13536 -12.96689 -12.77536 -12.63381 -12.40422 -12.10663 -11.94429 -11.85328 -11.49345 -11.36865 -11.28961 -11.22972 -11.02259 -10.63391 -10.61837 -10.48589 -10.39993 -10.31417 -10.12071 -9.96165 -9.89241 -9.68369 -9.32476 -8.58048 -7.42677 -6.05520 -4.03553 2.83899 3.00753 3.27796 3.35421 3.35682 4.40486 4.56901 4.72636 4.81416 4.94354 5.00621 5.06005 5.18158 5.23721 5.26852 5.30479 5.36702 5.39812 5.56582 5.64571 5.68090 5.73834 5.77938 5.81810 5.83691 5.87507 5.92679 5.95539 5.98972 6.02989 6.10801 6.16022 6.22799 6.25552 6.51461 6.58299 6.62736 6.72620 6.85146 6.89785 7.55114 7.80726 7.91163 8.41224 8.63437 9.05015 9.55188 11.07731 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.006211 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.114066 B = 4507.123506 C = 6274.623971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.462 3.538 5 O -0.483 6.483 6 C 0.064 3.936 7 N -0.505 5.505 8 C 0.167 3.833 9 C -0.512 4.512 10 H 0.080 0.920 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.082 3.918 18 H 0.083 0.917 19 C -0.162 4.162 20 C -0.113 4.113 21 C -0.096 4.096 22 H 0.069 0.931 23 C -0.114 4.114 24 C -0.151 4.151 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.120 0.880 33 H -0.006 1.006 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -1.752 16.683 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.304 3.696 5 O -0.368 6.368 6 C -0.065 4.065 7 N -0.228 5.228 8 C 0.042 3.958 9 C -0.551 4.551 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.027 4.027 18 H 0.101 0.899 19 C -0.202 4.202 20 C -0.151 4.151 21 C -0.114 4.114 22 H 0.087 0.913 23 C -0.152 4.152 24 C -0.209 4.209 25 C -0.168 4.168 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.176 -2.504 16.318 18.887 hybrid contribution 0.452 1.389 0.262 1.483 sum -8.724 -1.115 16.579 18.768 Atomic orbital electron populations 1.21784 0.93154 1.02502 1.03318 1.22887 0.94887 0.81198 1.02294 1.86507 1.25723 1.31559 1.84937 1.24121 0.79630 0.93720 0.72158 1.90614 1.59976 1.42772 1.43425 1.21587 0.90722 0.89415 1.04813 1.61577 1.03663 1.52566 1.04985 1.20210 0.93602 0.88513 0.93501 1.21052 1.32571 1.12929 0.88514 0.90208 1.24886 0.96116 0.97307 0.94841 1.69893 1.43735 1.39836 1.00208 0.86887 0.81135 0.83497 0.78368 1.20141 1.21212 1.19200 1.22471 0.99992 0.92281 0.87972 0.89875 1.23152 1.01379 0.99250 0.96379 1.22488 0.99791 0.96216 0.96640 1.22102 0.99240 0.95174 0.94919 0.91297 1.21533 0.99850 0.99043 0.94754 1.21782 0.99735 1.00552 0.98782 1.22590 0.99267 0.98094 0.96892 0.90677 0.91775 0.91495 0.91408 0.91765 0.90539 0.86170 0.98824 0.95303 0.92634 0.91643 0.91102 0.91637 0.92107 0.92304 0.92034 0.92671 0.92929 0.93198 0.89648 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -6.04 10.22 -39.26 -0.40 -6.44 16 4 C 0.46 8.76 6.43 36.01 0.23 8.99 16 5 O -0.48 -10.47 14.52 -18.75 -0.27 -10.74 16 6 C 0.06 1.21 4.66 -4.98 -0.02 1.18 16 7 N -0.50 -10.51 3.88 -228.17 -0.88 -11.40 16 8 C 0.17 3.93 3.16 -4.97 -0.02 3.92 16 9 C -0.51 -14.48 8.97 -34.44 -0.31 -14.79 16 10 H 0.08 2.52 8.02 -52.49 -0.42 2.10 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 13 Si 0.87 21.16 27.38 -169.99 -4.65 16.51 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.13 6.67 56.52 0.38 -5.76 16 17 C 0.08 1.40 2.98 -66.59 -0.20 1.20 16 18 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 19 C -0.16 -2.37 5.13 -25.07 -0.13 -2.50 16 20 C -0.11 -1.35 5.51 -24.74 -0.14 -1.49 16 21 C -0.10 -1.19 2.65 -88.90 -0.24 -1.42 16 22 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 23 C -0.11 -1.21 5.30 -26.73 -0.14 -1.35 16 24 C -0.15 -1.37 9.76 37.16 0.36 -1.01 16 25 C -0.13 -2.00 5.57 -25.55 -0.14 -2.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.95 8.13 -51.92 -0.42 0.53 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.08 1.23 5.35 -51.93 -0.28 0.95 16 32 H 0.12 2.43 7.07 -51.93 -0.37 2.07 16 33 H -0.01 -0.13 7.05 -51.93 -0.37 -0.50 16 34 H 0.03 0.69 7.11 -51.93 -0.37 0.32 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.07 5.88 -51.93 -0.31 0.76 16 38 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 39 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 42 H 0.05 0.49 7.38 -51.92 -0.38 0.10 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.49 3.69 -51.93 -0.19 1.30 16 46 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -31.63 354.17 -8.47 -40.09 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.15 Total: 0.87 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.22 Total: -7.52 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.11 Total: -38.12 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.67 Total: -17.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.65 Total: 16.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.63 -8.47 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173296495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.303 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds