Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00057 * 2 1 4 4 O 1.20826 * 119.99891 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99911 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47316 * 60.00423 * 5 3 2 7 7 C 1.52997 * 109.47281 * 300.00033 * 5 3 2 8 8 C 1.53006 * 109.47048 * 180.02562 * 5 3 2 9 9 N 1.46893 * 109.47165 * 180.02562 * 8 5 3 10 10 C 1.46905 * 111.00246 * 179.97438 * 9 8 5 11 11 C 1.52995 * 109.47500 * 204.99866 * 10 9 8 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46989 * 60.00030 * 12 11 10 14 14 C 1.50694 * 109.47168 * 59.99989 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.53000 * 109.47124 * 299.99675 * 13 12 11 23 23 C 1.53000 * 109.46922 * 60.00284 * 22 13 12 24 24 H 1.08999 * 109.47012 * 59.99636 * 1 2 3 25 25 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46625 * 299.99532 * 1 2 3 27 27 H 1.09003 * 109.47226 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.47226 * 299.99922 * 6 5 3 29 29 H 1.09002 * 109.47014 * 59.99910 * 6 5 3 30 30 H 1.09003 * 109.47612 * 300.00100 * 7 5 3 31 31 H 1.09003 * 109.46735 * 60.00400 * 7 5 3 32 32 H 1.09001 * 109.47370 * 179.97438 * 7 5 3 33 33 H 1.08994 * 109.47345 * 59.99917 * 8 5 3 34 34 H 1.09002 * 109.46966 * 299.99897 * 8 5 3 35 35 H 1.00900 * 111.00244 * 303.94730 * 9 8 5 36 36 H 1.08998 * 109.46545 * 324.99920 * 10 9 8 37 37 H 1.08995 * 109.47132 * 59.99890 * 11 10 9 38 38 H 1.09007 * 109.46935 * 300.00130 * 11 10 9 39 39 H 1.08998 * 109.46768 * 300.00007 * 12 11 10 40 40 H 1.09000 * 109.47156 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.46926 * 179.97438 * 13 12 11 42 42 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.47131 * 180.02562 * 22 13 12 44 44 H 1.08998 * 109.47544 * 300.00581 * 22 13 12 45 45 H 1.09000 * 109.47156 * 179.97438 * 23 22 13 46 46 H 1.09007 * 109.47356 * 59.99868 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1128 0.5817 -1.2502 7 6 4.1139 0.5810 1.2483 8 6 4.0001 2.7421 0.0002 9 7 5.4671 2.8190 -0.0010 10 6 5.9211 4.2161 -0.0009 11 6 7.3215 4.2974 -0.6116 12 6 7.7940 5.7526 -0.6121 13 6 7.8331 6.2765 0.8249 14 6 8.7855 5.4394 1.6391 15 1 9.3102 4.6157 1.1780 16 6 8.9871 5.7250 2.9729 17 7 9.8142 4.9910 3.6848 18 14 8.0791 7.1492 3.7707 19 1 6.7892 6.6655 4.3251 20 1 8.9081 7.7135 4.8659 21 1 7.8182 8.2009 2.7552 22 6 6.4326 6.1954 1.4356 23 6 5.9601 4.7401 1.4360 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 5.2014 0.6391 -1.2508 28 1 3.8038 -0.4636 -1.2503 29 1 3.7228 1.0760 -2.1399 30 1 3.7245 1.0749 2.1386 31 1 3.8048 -0.4643 1.2481 32 1 5.2024 0.6376 1.2476 33 1 3.6108 3.2357 0.8906 34 1 3.6100 3.2368 -0.8893 35 1 5.8564 2.3120 0.7797 36 1 5.2323 4.8219 -0.5896 37 1 7.2936 3.9245 -1.6354 38 1 8.0103 3.6914 -0.0229 39 1 7.1051 6.3580 -1.2010 40 1 8.7916 5.8105 -1.0476 41 1 8.1702 7.3131 0.8246 42 1 9.9563 5.1922 4.6231 43 1 6.4603 6.5690 2.4591 44 1 5.7437 6.8008 0.8466 45 1 4.9625 4.6822 1.8715 46 1 6.6490 4.1346 2.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -104.891880 kcal Electronic energy + Delta-G solvation = -23687.308815 eV Core-core repulsion = 20383.207585 eV Total energy + Delta-G solvation = -3304.101230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88264 -38.61615 -37.09613 -36.20858 -33.62133 -31.85399 -29.93901 -28.72608 -27.87564 -27.45606 -25.58895 -24.29802 -22.83732 -21.83277 -20.71836 -19.64672 -18.67987 -17.42835 -16.79330 -16.54907 -16.22434 -15.47644 -14.74299 -14.44273 -14.37106 -14.04753 -13.70722 -13.61969 -13.39459 -13.04025 -12.66212 -12.48297 -12.35675 -12.24461 -12.05625 -11.96809 -11.85823 -11.48238 -11.37712 -11.09288 -11.00202 -10.89819 -10.79388 -10.43234 -10.35168 -10.14567 -9.96309 -9.73299 -9.30204 -9.10540 -8.79093 -8.48884 -7.96062 -6.03244 -3.99597 2.06676 2.49959 3.28530 3.40163 3.41708 4.39845 4.44553 4.44757 4.67141 4.81082 4.85330 4.93052 5.02363 5.25925 5.29279 5.45033 5.54038 5.58491 5.64462 5.66959 5.78753 5.81062 5.90512 5.92695 6.08257 6.15975 6.18073 6.21995 6.28258 6.32479 6.36216 6.45578 6.56541 6.70765 6.78940 7.04237 7.11430 7.15086 7.29970 7.45924 7.52110 7.60194 7.71828 7.86182 8.58752 9.01928 9.60893 11.09779 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.003954 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.601584 B = 7080.430084 C = 7287.765629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.507 6.507 5 C -0.051 4.051 6 C -0.131 4.131 7 C -0.146 4.146 8 C 0.078 3.922 9 N -0.682 5.682 10 C 0.098 3.902 11 C -0.094 4.094 12 C -0.096 4.096 13 C 0.006 3.994 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.268 1.268 22 C -0.113 4.113 23 C -0.133 4.133 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -10.079 -7.862 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.394 6.394 5 C -0.052 4.052 6 C -0.188 4.188 7 C -0.203 4.203 8 C -0.051 4.051 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.132 4.132 12 C -0.135 4.135 13 C -0.012 4.012 14 C -0.537 4.537 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.193 1.193 22 C -0.151 4.151 23 C -0.172 4.172 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.326 -9.892 -8.379 20.073 hybrid contribution -1.094 1.174 1.687 2.328 sum -16.420 -8.718 -6.692 19.759 Atomic orbital electron populations 1.23255 0.76691 1.03557 1.02495 1.86513 1.23082 1.33567 1.84069 1.23893 0.91983 0.81173 0.71646 1.90665 1.67209 1.36407 1.45102 1.20553 0.85899 0.98954 0.99806 1.21755 1.03494 0.99253 0.94274 1.21917 1.02741 1.00724 0.94964 1.21770 0.89630 0.91913 1.01815 1.60707 1.05962 1.14494 1.50189 1.21512 0.97102 0.86635 0.95866 1.21363 0.95114 0.97561 0.99120 1.21359 0.99238 0.95161 0.97698 1.19211 0.92308 0.96898 0.92824 1.21031 1.23434 1.15139 0.94095 0.90573 1.24998 0.94978 0.95861 0.97417 1.69904 1.36749 1.39503 1.08123 0.86905 0.78920 0.83868 0.78840 1.20895 1.22794 1.19285 1.21768 0.98897 0.95044 0.99354 1.22055 0.99212 0.98777 0.97142 0.91987 0.88152 0.91992 0.89252 0.92130 0.92538 0.92276 0.91161 0.89943 0.94389 0.90474 0.83812 0.91835 0.93471 0.90594 0.94693 0.92728 0.95770 0.92892 0.93928 0.94756 0.94735 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.86 10.37 -39.27 -0.41 -4.27 16 3 C 0.47 5.97 6.55 36.00 0.24 6.21 16 4 O -0.51 -7.81 15.73 -18.75 -0.29 -8.11 16 5 C -0.05 -0.59 0.78 -155.67 -0.12 -0.71 16 6 C -0.13 -1.33 8.25 37.15 0.31 -1.02 16 7 C -0.15 -1.52 8.07 37.16 0.30 -1.22 16 8 C 0.08 1.07 3.74 -3.82 -0.01 1.06 16 9 N -0.68 -9.84 5.46 -106.73 -0.58 -10.42 16 10 C 0.10 1.66 2.47 -67.71 -0.17 1.49 16 11 C -0.09 -1.69 5.30 -26.73 -0.14 -1.83 16 12 C -0.10 -1.88 5.41 -26.73 -0.14 -2.02 16 13 C 0.01 0.15 2.18 -91.77 -0.20 -0.05 16 14 C -0.50 -13.32 7.19 -34.44 -0.25 -13.57 16 15 H 0.08 2.19 6.95 -52.49 -0.37 1.83 16 16 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 18 Si 0.88 22.04 24.37 -169.99 -4.14 17.89 16 19 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 22 C -0.11 -2.41 4.94 -26.73 -0.13 -2.54 16 23 C -0.13 -2.59 4.95 -26.73 -0.13 -2.72 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.09 0.94 7.60 -51.93 -0.39 0.54 16 28 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 33 H 0.04 0.57 7.40 -51.93 -0.38 0.19 16 34 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 35 H 0.34 4.92 6.52 -39.29 -0.26 4.66 16 36 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.54 6.62 -51.93 -0.34 1.20 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.63 7.46 -51.93 -0.39 0.24 16 46 H 0.08 1.83 7.21 -51.93 -0.37 1.46 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -30.14 346.64 -6.96 -37.10 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.04 Total: 2.68 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 0.51 Total: -13.78 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.19 Total: -36.74 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.70 Total: -12.37 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.14 -6.96 -37.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.794 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds