Wall clock time and date at job start Tue Mar 31 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 N 1.46901 * 109.47143 * 294.99574 * 4 3 2 7 7 C 1.46900 * 110.99981 * 155.00000 * 6 4 3 8 8 C 1.52995 * 109.47136 * 275.00290 * 7 6 4 9 9 C 1.53004 * 109.46747 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47334 * 60.00039 * 9 8 7 11 11 C 1.50699 * 109.47129 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00057 * 120.00020 * 11 10 9 13 13 C 1.37879 * 120.00013 * 299.99937 * 11 10 9 14 14 N 1.31521 * 120.00055 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00207 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46908 * 59.99799 * 15 13 11 17 17 H 1.48490 * 109.47066 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46959 * 300.00204 * 15 13 11 19 19 C 1.52995 * 109.47172 * 299.99701 * 10 9 8 20 20 C 1.53004 * 109.46732 * 155.00211 * 7 6 4 21 21 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 22 22 O 1.20823 * 120.00102 * 120.00011 * 21 4 3 23 23 O 1.34224 * 120.00110 * 299.99572 * 21 4 3 24 24 C 1.45199 * 117.00103 * 180.02562 * 23 21 4 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.00907 * 110.99901 * 31.05186 * 6 4 3 33 33 H 1.09001 * 109.46667 * 35.00893 * 7 6 4 34 34 H 1.08998 * 109.47168 * 299.99587 * 8 7 6 35 35 H 1.08998 * 109.47127 * 60.00315 * 8 7 6 36 36 H 1.08998 * 109.46846 * 299.99658 * 9 8 7 37 37 H 1.08998 * 109.47028 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47120 * 60.00026 * 10 9 8 39 39 H 0.96998 * 119.99926 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.47168 * 300.00480 * 19 10 9 41 41 H 1.08998 * 109.47127 * 179.97438 * 19 10 9 42 42 H 1.08998 * 109.47332 * 300.00251 * 20 7 6 43 43 H 1.09001 * 109.46987 * 60.00878 * 20 7 6 44 44 H 1.09002 * 109.47177 * 299.99498 * 24 23 21 45 45 H 1.08997 * 109.47655 * 60.00189 * 24 23 21 46 46 H 1.09008 * 109.47242 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 7 4.0602 0.8569 1.2543 7 6 5.4074 0.2968 1.0831 8 6 5.3016 -1.1281 0.5361 9 6 6.7048 -1.7115 0.3584 10 6 7.4220 -1.7358 1.7097 11 6 8.8038 -2.3111 1.5348 12 1 9.6711 -1.7195 1.7881 13 6 8.9609 -3.5927 1.0512 14 7 7.9048 -4.3130 0.7422 15 14 10.6738 -4.3061 0.8350 16 1 11.3693 -4.3298 2.1468 17 1 10.5706 -5.6889 0.3037 18 1 11.4431 -3.4663 -0.1180 19 6 7.5278 -0.3109 2.2567 20 6 6.1250 0.2726 2.4342 21 6 4.0723 2.8578 -0.1245 22 8 4.7673 3.3303 0.7436 23 8 3.7477 3.5935 -1.1991 24 6 4.2673 4.9483 -1.2519 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.4199 0.1587 1.6020 33 1 5.9710 0.9139 0.3833 34 1 4.7380 -1.7450 1.2360 35 1 4.7904 -1.1108 -0.4263 36 1 7.2688 -1.0947 -0.3412 37 1 6.6296 -2.7265 -0.0317 38 1 6.8579 -2.3527 2.4094 39 1 8.0153 -5.2148 0.4023 40 1 8.0917 0.3059 1.5570 41 1 8.0383 -0.3283 3.2196 42 1 6.2003 1.2878 2.8239 43 1 5.5614 -0.3444 3.1340 44 1 3.9041 5.5105 -0.3915 45 1 5.3567 4.9206 -1.2342 46 1 3.9306 5.4312 -2.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:30 Heat of formation + Delta-G solvation = -116.123547 kcal Electronic energy + Delta-G solvation = -23517.190061 eV Core-core repulsion = 20212.601789 eV Total energy + Delta-G solvation = -3304.588272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51530 -38.40377 -36.54469 -36.05135 -33.72203 -32.15545 -30.09197 -29.60023 -27.96698 -27.07953 -24.70450 -24.00725 -21.61143 -21.37593 -20.67765 -20.35279 -18.73169 -17.54287 -16.54231 -16.33910 -16.25417 -15.66890 -15.24247 -14.55143 -14.32749 -14.02106 -13.61682 -13.22979 -13.14804 -13.03952 -12.66503 -12.57749 -12.32801 -12.22133 -11.95142 -11.74520 -11.35526 -11.33028 -11.17065 -10.95647 -10.81906 -10.77844 -10.72121 -10.44728 -10.27724 -10.17357 -10.09751 -9.89443 -9.34769 -8.96268 -8.65696 -8.30295 -8.05452 -5.94073 -3.99743 2.33604 2.65392 3.34223 3.38511 3.41765 4.27894 4.47629 4.54805 4.70186 4.81453 5.01877 5.03878 5.08923 5.18936 5.33018 5.34953 5.41648 5.44655 5.49039 5.62300 5.64902 5.75391 5.92262 5.95267 6.00981 6.12800 6.22443 6.29143 6.36724 6.40512 6.45923 6.66248 6.74294 6.88268 6.96601 7.13405 7.24143 7.33643 7.52871 7.59233 7.79128 7.91955 8.07454 8.19230 8.52891 9.04357 9.64583 11.11330 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.004094 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.305557 B = 6837.317229 C = 7638.591602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.116 4.116 4 C 0.099 3.901 5 H 0.084 0.916 6 N -0.669 5.669 7 C 0.094 3.906 8 C -0.144 4.144 9 C -0.105 4.105 10 C 0.049 3.951 11 C -0.512 4.512 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.108 4.108 20 C -0.098 4.098 21 C 0.459 3.541 22 O -0.480 6.480 23 O -0.367 6.367 24 C 0.036 3.964 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.351 0.649 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.259 0.741 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 12.304 -4.352 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.154 4.154 4 C -0.013 4.013 5 H 0.102 0.898 6 N -0.304 5.304 7 C -0.015 4.015 8 C -0.183 4.183 9 C -0.143 4.143 10 C 0.030 3.970 11 C -0.550 4.550 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.147 4.147 20 C -0.136 4.136 21 C 0.299 3.701 22 O -0.364 6.364 23 O -0.284 6.284 24 C -0.058 4.058 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.783 12.908 -3.895 19.281 hybrid contribution 0.932 -1.019 -0.684 1.541 sum -12.851 11.889 -4.578 18.096 Atomic orbital electron populations 1.21731 0.95327 1.01844 1.01801 1.21597 0.96383 0.95858 1.02764 1.21744 0.91554 0.98381 1.03759 1.21018 0.95943 0.89172 0.95120 0.89845 1.60215 1.04974 1.39156 1.26057 1.21681 0.87520 0.93920 0.98341 1.22319 1.01103 0.95999 0.98886 1.21547 0.90910 1.01729 1.00151 1.18651 0.95507 0.90115 0.92694 1.21232 0.92468 0.98654 1.42639 0.92884 1.24961 0.96439 0.97044 0.95537 1.69866 1.28371 1.09992 1.44908 0.86718 0.85130 0.78054 0.78442 1.20340 1.21377 1.20392 1.21621 0.93969 0.99096 0.99976 1.21439 0.96783 1.00088 0.95309 1.23919 0.78202 0.88889 0.79108 1.90662 1.34040 1.71845 1.39874 1.86487 1.70303 1.26907 1.44657 1.23196 0.99792 0.79849 1.02913 0.92723 0.92512 0.92645 0.91449 0.91405 0.90552 0.90098 0.82625 0.91482 0.92575 0.94309 0.94999 0.89050 0.95732 0.93126 0.93636 0.93354 0.92683 0.92837 0.92120 0.92016 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.13 -1.16 5.76 -26.74 -0.15 -1.32 16 3 C -0.12 -1.15 4.77 -26.73 -0.13 -1.27 16 4 C 0.10 1.28 2.37 -68.86 -0.16 1.11 16 5 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 6 N -0.67 -9.83 5.59 -100.96 -0.56 -10.40 16 7 C 0.09 1.65 2.11 -67.71 -0.14 1.50 16 8 C -0.14 -2.67 5.16 -26.73 -0.14 -2.81 16 9 C -0.10 -2.44 4.98 -26.73 -0.13 -2.57 16 10 C 0.05 1.21 2.10 -91.78 -0.19 1.02 16 11 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 14 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 C -0.11 -2.35 5.14 -26.75 -0.14 -2.49 16 20 C -0.10 -1.85 5.53 -26.75 -0.15 -2.00 16 21 C 0.46 6.68 7.00 36.01 0.25 6.93 16 22 O -0.48 -8.54 16.01 -18.75 -0.30 -8.84 16 23 O -0.37 -4.54 10.37 -39.24 -0.41 -4.95 16 24 C 0.04 0.35 10.56 101.05 1.07 1.42 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.72 7.99 -51.93 -0.42 0.31 16 32 H 0.35 4.64 6.21 -39.29 -0.24 4.39 16 33 H 0.07 1.28 7.64 -51.93 -0.40 0.88 16 34 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.04 0.65 7.43 -51.93 -0.39 0.26 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 38 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 45 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 46 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -30.33 360.44 -8.61 -38.95 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.34 Total: 2.32 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.04 Total: -14.16 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.06 Total: -35.18 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.71 Total: -13.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.33 -8.61 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.176 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds