Wall clock time and date at job start Tue Mar 31 2020 07:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47340 * 2 1 4 4 H 1.09011 * 109.46882 * 54.77929 * 3 2 1 5 5 C 1.50697 * 109.47340 * 174.77763 * 3 2 1 6 6 H 1.07996 * 119.99858 * 114.65831 * 5 3 2 7 7 C 1.37875 * 120.00303 * 294.66407 * 5 3 2 8 8 N 1.31507 * 120.00413 * 170.50083 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 350.49814 * 7 5 3 10 10 H 1.48506 * 109.47071 * 266.93945 * 9 7 5 11 11 H 1.48502 * 109.47086 * 26.93622 * 9 7 5 12 12 H 1.48497 * 109.47309 * 146.93574 * 9 7 5 13 13 N 1.46897 * 109.47284 * 294.78282 * 3 2 1 14 14 C 1.46905 * 111.00136 * 117.56091 * 13 3 2 15 15 C 1.53774 * 113.61505 * 249.69915 * 14 13 3 16 16 C 1.53960 * 87.01909 * 220.04739 * 15 14 13 17 17 C 1.50694 * 113.53593 * 270.81130 * 16 15 14 18 18 O 1.20826 * 120.00401 * 97.49398 * 17 16 15 19 19 O 1.34230 * 120.00325 * 277.49510 * 17 16 15 20 20 C 1.45196 * 117.00737 * 180.02562 * 19 17 16 21 21 C 1.53003 * 109.47149 * 59.99591 * 20 19 17 22 22 C 1.52992 * 109.47714 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.46969 * 300.00323 * 20 19 17 24 24 C 1.53777 * 87.11134 * 25.36074 * 16 15 14 25 25 H 1.09000 * 109.47239 * 293.52100 * 1 2 3 26 26 H 1.09004 * 109.46867 * 53.51614 * 1 2 3 27 27 H 1.08995 * 109.47597 * 173.51373 * 1 2 3 28 28 H 1.09005 * 109.47040 * 240.00478 * 2 1 3 29 29 H 1.08998 * 109.46831 * 120.00064 * 2 1 3 30 30 H 0.97001 * 120.00216 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99980 * 241.51119 * 13 3 2 32 32 H 1.08997 * 112.84640 * 20.89456 * 14 13 3 33 33 H 1.08997 * 113.61526 * 334.56179 * 15 14 13 34 34 H 1.09002 * 113.61541 * 105.47105 * 15 14 13 35 35 H 1.08999 * 113.74375 * 139.94141 * 16 15 14 36 36 H 1.09002 * 109.47193 * 60.00366 * 21 20 19 37 37 H 1.09000 * 109.47328 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.47186 * 300.00705 * 21 20 19 39 39 H 1.09008 * 109.46912 * 60.00045 * 22 20 19 40 40 H 1.08996 * 109.47721 * 179.97438 * 22 20 19 41 41 H 1.08999 * 109.47353 * 300.00599 * 22 20 19 42 42 H 1.08995 * 109.47634 * 59.99356 * 23 20 19 43 43 H 1.08996 * 109.47104 * 180.02562 * 23 20 19 44 44 H 1.09008 * 109.46767 * 299.99410 * 23 20 19 45 45 H 1.08994 * 113.61649 * 220.08922 * 24 16 15 46 46 H 1.09004 * 113.69203 * 89.19558 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 0.8396 5 6 3.5414 1.4445 0.1293 6 1 4.1529 1.8094 -0.6827 7 6 4.1346 0.9803 1.2842 8 7 5.4372 0.8058 1.3301 9 14 3.0878 0.5992 2.7837 10 1 3.0322 1.7932 3.6650 11 1 1.7138 0.2398 2.3499 12 1 3.6851 -0.5383 3.5283 13 7 1.6560 2.0977 -1.2574 14 6 0.7606 3.2350 -1.0064 15 6 -0.6832 2.9985 -1.4796 16 6 -0.6789 4.4602 -1.9631 17 6 -1.1298 5.4427 -0.9132 18 8 -0.3123 6.0433 -0.2569 19 8 -2.4398 5.6507 -0.7071 20 6 -2.8013 6.6114 0.3198 21 6 -2.2185 7.9808 -0.0351 22 6 -4.3252 6.7138 0.4089 23 6 -2.2408 6.1525 1.6675 24 6 0.8498 4.3370 -2.0753 25 1 -0.3634 0.4101 0.9423 26 1 -0.3633 0.6111 -0.8263 27 1 -0.3634 -1.0210 -0.1161 28 1 1.8933 -0.5138 -0.8901 29 1 1.8932 -0.5138 0.8900 30 1 5.8544 0.4789 2.1425 31 1 2.4705 2.3869 -1.7780 32 1 0.8295 3.6105 0.0146 33 1 -0.7643 2.2717 -2.2878 34 1 -1.3838 2.8088 -0.6664 35 1 -1.1766 4.6069 -2.9217 36 1 -2.6177 8.3079 -0.9952 37 1 -2.4894 8.7020 0.7360 38 1 -1.1327 7.9082 -0.0989 39 1 -4.7407 5.7382 0.6616 40 1 -4.5965 7.4347 1.1801 41 1 -4.7241 7.0409 -0.5513 42 1 -1.1551 6.0799 1.6038 43 1 -2.5125 6.8735 2.4385 44 1 -2.6560 5.1769 1.9204 45 1 1.3852 5.2261 -1.7423 46 1 1.1901 3.9768 -3.0462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180593847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:22 Heat of formation + Delta-G solvation = -71.603402 kcal Electronic energy + Delta-G solvation = -23721.980438 eV Core-core repulsion = 20419.322704 eV Total energy + Delta-G solvation = -3302.657734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10243 -38.82462 -36.71126 -35.29184 -34.13649 -32.02932 -30.76952 -27.61329 -27.55486 -27.30036 -25.53614 -25.20582 -22.54551 -21.89444 -20.21901 -19.61530 -18.85645 -17.23826 -16.79504 -16.45958 -16.03213 -15.21799 -14.96626 -14.87580 -14.31116 -13.80888 -13.69857 -13.55849 -12.93558 -12.72193 -12.57913 -12.41073 -12.36708 -12.19153 -12.07471 -12.05772 -11.89966 -11.61846 -11.48155 -11.41223 -11.11939 -10.86034 -10.70507 -10.58670 -10.47924 -10.16804 -10.05189 -9.83954 -9.68377 -9.20344 -9.09178 -8.47489 -7.46683 -6.11248 -4.09552 2.25615 2.61183 3.28048 3.37646 3.41117 4.41045 4.49975 4.55105 4.58462 4.66032 4.73769 4.76266 5.02927 5.14933 5.23791 5.26601 5.34743 5.47966 5.53737 5.55050 5.65283 5.66713 5.78118 5.79867 5.94724 6.05502 6.07642 6.11481 6.15772 6.17001 6.18615 6.31886 6.37555 6.47086 6.60516 6.71383 6.83706 7.11777 7.14040 7.48848 7.62092 7.88395 8.02354 8.36567 8.59444 8.94927 9.53573 11.01710 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.004395 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.942754 B = 6369.612176 C = 6619.046658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.187 3.813 4 H 0.013 0.987 5 C -0.537 4.537 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.860 3.140 10 H -0.283 1.283 11 H -0.242 1.242 12 H -0.287 1.287 13 N -0.667 5.667 14 C 0.068 3.932 15 C -0.108 4.108 16 C -0.119 4.119 17 C 0.483 3.517 18 O -0.497 6.497 19 O -0.350 6.350 20 C 0.116 3.884 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.185 4.185 24 C -0.126 4.126 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.343 0.657 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 10.407 -4.298 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.078 3.922 4 H 0.030 0.970 5 C -0.575 4.575 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.687 3.313 10 H -0.209 1.209 11 H -0.166 1.166 12 H -0.213 1.213 13 N -0.298 5.298 14 C -0.043 4.043 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.326 3.674 18 O -0.384 6.384 19 O -0.268 6.268 20 C 0.080 3.920 21 C -0.240 4.240 22 C -0.197 4.197 23 C -0.242 4.242 24 C -0.164 4.164 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.777 10.101 -4.081 21.708 hybrid contribution 0.240 0.539 1.452 1.567 sum -18.537 10.640 -2.629 21.534 Atomic orbital electron populations 1.21841 0.98483 0.99574 1.00668 1.21923 0.92989 0.99311 1.00746 1.19573 0.94946 0.91034 0.86632 0.96951 1.21484 0.89778 1.43435 1.02826 0.90730 1.24927 0.94717 0.94335 0.98668 1.69939 1.09790 1.45526 1.28031 0.87315 0.82658 0.78117 0.83195 1.20926 1.16602 1.21335 1.60695 1.21262 1.25633 1.22219 1.23085 0.93524 0.90386 0.97340 1.23161 0.98240 0.91793 1.01489 1.22033 0.99541 0.95442 0.96848 1.23150 0.80368 0.81071 0.82832 1.90581 1.54415 1.47013 1.46425 1.86543 1.26867 1.58537 1.54856 1.22155 0.95654 0.87635 0.86593 1.22491 1.04058 0.95407 1.02030 1.21839 0.91965 1.03036 1.02840 1.22501 1.04302 1.01912 0.95468 1.23231 0.91894 1.00281 1.00967 0.94789 0.91972 0.94882 0.92573 0.92981 0.92692 0.83775 0.91025 0.87912 0.91662 0.87322 0.92124 0.91175 0.89689 0.91451 0.90489 0.91569 0.89584 0.91186 0.91922 0.90294 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.88 37.16 0.37 -2.37 16 2 C -0.11 -2.44 4.81 -26.73 -0.13 -2.57 16 3 C 0.19 4.35 1.74 -68.87 -0.12 4.23 16 4 H 0.01 0.31 5.90 -51.92 -0.31 0.00 16 5 C -0.54 -14.82 9.07 -34.44 -0.31 -15.14 16 6 H 0.07 2.21 7.59 -52.49 -0.40 1.81 16 7 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 8 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 9 Si 0.86 21.32 25.76 -169.99 -4.38 16.94 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.24 -5.62 5.14 56.52 0.29 -5.33 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.67 -13.02 5.88 -100.10 -0.59 -13.61 16 14 C 0.07 1.16 3.73 -66.90 -0.25 0.91 16 15 C -0.11 -1.51 5.86 -25.83 -0.15 -1.66 16 16 C -0.12 -1.51 4.46 -90.87 -0.41 -1.91 16 17 C 0.48 6.82 6.52 36.00 0.23 7.06 16 18 O -0.50 -8.12 11.25 -18.75 -0.21 -8.33 16 19 O -0.35 -4.52 9.89 -39.26 -0.39 -4.90 16 20 C 0.12 1.27 1.13 -90.62 -0.10 1.17 16 21 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 22 C -0.14 -1.14 8.85 37.15 0.33 -0.81 16 23 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 24 C -0.13 -1.77 7.00 -25.92 -0.18 -1.96 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.07 5.63 -51.93 -0.29 0.78 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.21 4.46 -51.93 -0.23 0.98 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.34 6.84 7.58 -39.29 -0.30 6.54 16 32 H 0.07 1.42 7.23 -51.93 -0.38 1.04 16 33 H 0.10 1.34 7.96 -51.93 -0.41 0.93 16 34 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.08 5.89 -51.93 -0.31 0.77 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.08 1.20 7.43 -51.93 -0.39 0.81 16 46 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -30.41 350.94 -7.75 -38.16 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.05 Total: 7.36 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.19 Total: -14.37 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.18 Total: -40.15 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.60 Total: -13.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.38 Total: 16.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -7.75 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180593847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.444 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds