Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46971 * 2 1 4 4 C 1.52998 * 109.47460 * 120.00151 * 2 1 3 5 5 C 1.53002 * 109.46832 * 65.19455 * 4 2 1 6 6 C 1.52996 * 109.47404 * 54.84625 * 5 4 2 7 7 O 1.42897 * 109.47158 * 294.83895 * 5 4 2 8 8 C 1.50702 * 109.46776 * 174.84159 * 5 4 2 9 9 O 1.21279 * 120.00185 * 335.00264 * 8 5 4 10 10 N 1.34777 * 120.00063 * 154.99789 * 8 5 4 11 11 C 1.46495 * 119.99981 * 180.02562 * 10 8 5 12 12 H 1.08996 * 109.41601 * 324.85725 * 11 10 8 13 13 C 1.52960 * 109.35673 * 84.68502 * 11 10 8 14 14 C 1.53668 * 109.32482 * 183.79887 * 13 11 10 15 15 C 1.51273 * 108.30567 * 305.13544 * 14 13 11 16 16 C 1.37873 * 120.84753 * 231.37901 * 15 14 13 17 17 N 1.31516 * 120.00196 * 7.89490 * 16 15 14 18 18 Si 1.86799 * 120.00050 * 187.88682 * 16 15 14 19 19 H 1.48498 * 109.47300 * 270.00375 * 18 16 15 20 20 H 1.48504 * 109.47154 * 30.00357 * 18 16 15 21 21 H 1.48501 * 109.47192 * 150.00333 * 18 16 15 22 22 C 1.51265 * 118.29909 * 51.66018 * 15 14 13 23 23 C 1.52964 * 109.41317 * 205.00050 * 11 10 8 24 24 H 1.08994 * 109.47727 * 52.72889 * 1 2 3 25 25 H 1.09002 * 109.47115 * 172.73072 * 1 2 3 26 26 H 1.09006 * 109.47002 * 292.72963 * 1 2 3 27 27 H 1.09002 * 109.47104 * 240.00552 * 2 1 3 28 28 H 1.09001 * 109.46960 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46929 * 300.00370 * 3 2 1 30 30 H 1.08993 * 109.47317 * 60.00329 * 3 2 1 31 31 H 1.09000 * 109.47187 * 305.18898 * 4 2 1 32 32 H 1.09001 * 109.46979 * 185.19218 * 4 2 1 33 33 H 1.08997 * 109.47395 * 180.02562 * 6 5 4 34 34 H 1.09006 * 109.46751 * 299.99764 * 6 5 4 35 35 H 1.09000 * 109.47260 * 59.99203 * 6 5 4 36 36 H 0.96698 * 114.00328 * 300.00685 * 7 5 4 37 37 H 0.96996 * 119.99498 * 359.97438 * 10 8 5 38 38 H 1.08999 * 109.48363 * 303.64231 * 13 11 10 39 39 H 1.09003 * 109.48244 * 63.67290 * 13 11 10 40 40 H 1.09002 * 109.68710 * 185.52318 * 14 13 11 41 41 H 1.08996 * 109.78858 * 64.80733 * 14 13 11 42 42 H 0.97003 * 119.99771 * 354.76027 * 17 16 15 43 43 H 1.08999 * 109.62599 * 68.11297 * 22 15 14 44 44 H 1.09007 * 109.62147 * 188.49101 * 22 15 14 45 45 H 1.09000 * 109.48357 * 56.38590 * 23 11 10 46 46 H 1.09002 * 109.49008 * 296.35520 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6395 -2.1965 1.1855 6 6 2.1447 -2.8062 -0.1236 7 8 0.2159 -2.3066 1.2442 8 6 2.2487 -2.9331 2.3506 9 8 3.2546 -2.5079 2.8779 10 7 1.6755 -4.0645 2.8067 11 6 2.2674 -4.7802 3.9396 12 1 3.3532 -4.6977 3.8930 13 6 1.7663 -4.1634 5.2466 14 6 2.4601 -4.8516 6.4325 15 6 2.2288 -6.3422 6.3184 16 6 1.7359 -7.0648 7.3842 17 7 1.3147 -6.4413 8.4628 18 14 1.6660 -8.9294 7.2960 19 1 0.3601 -9.3495 6.7272 20 1 2.7656 -9.4256 6.4300 21 1 1.8166 -9.4955 8.6606 22 6 2.5584 -7.0208 5.0073 23 6 1.8664 -6.2549 3.8749 24 1 -0.3634 0.6223 -0.8177 25 1 -0.3633 -1.0194 -0.1300 26 1 -0.3633 0.3971 0.9479 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6028 -0.2639 2.1368 32 1 3.1261 -0.6414 1.2968 33 1 1.8589 -3.8570 -0.1692 34 1 1.7041 -2.2734 -0.9664 35 1 3.2305 -2.7222 -0.1684 36 1 -0.1741 -1.9394 2.0492 37 1 0.8707 -4.4043 2.3853 38 1 1.9991 -3.0987 5.2589 39 1 0.6876 -4.3007 5.3233 40 1 2.0368 -4.4860 7.3681 41 1 3.5297 -4.6439 6.4054 42 1 1.4206 -5.4801 8.5399 43 1 3.6371 -7.0103 4.8506 44 1 2.2015 -8.0505 5.0282 45 1 2.1701 -6.6724 2.9150 46 1 0.7854 -6.3430 3.9840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183971973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = -124.576658 kcal Electronic energy + Delta-G solvation = -23699.540998 eV Core-core repulsion = 20394.586171 eV Total energy + Delta-G solvation = -3304.954826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38073 -38.07623 -36.67213 -35.29302 -33.78608 -31.73846 -31.27772 -29.70659 -27.29004 -27.10488 -26.95367 -23.72629 -22.11559 -21.36318 -20.10328 -19.88637 -19.56823 -17.86966 -16.51773 -16.33620 -15.63805 -15.48226 -14.92336 -14.64888 -13.87789 -13.85930 -13.72035 -13.42440 -13.03715 -12.89252 -12.62160 -12.54284 -12.32705 -12.21397 -12.01075 -11.81257 -11.79094 -11.64656 -11.25075 -11.13627 -10.88363 -10.76674 -10.70338 -10.54342 -10.32803 -10.13220 -10.06457 -9.61496 -9.49927 -9.07159 -8.70702 -8.42183 -8.21475 -6.45399 -4.03337 2.76930 3.34446 3.38119 3.43429 3.57809 3.97999 4.45197 4.52610 4.59436 4.76078 4.93805 4.98577 5.17587 5.22630 5.40305 5.47662 5.53510 5.58372 5.60655 5.68261 5.74133 5.80060 5.81478 5.88789 6.00011 6.05212 6.09710 6.22786 6.31963 6.38585 6.43955 6.63097 6.70974 6.71480 6.90303 6.99702 7.10132 7.26682 7.31596 7.33518 7.57951 7.86448 8.05326 8.29975 8.48093 8.86034 9.59442 10.92476 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036486 B = 0.003622 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.229299 B = 7729.419383 C = 7922.132850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.127 4.127 5 C 0.121 3.879 6 C -0.138 4.138 7 O -0.547 6.547 8 C 0.483 3.517 9 O -0.540 6.540 10 N -0.714 5.714 11 C 0.154 3.846 12 H 0.076 0.924 13 C -0.110 4.110 14 C 0.004 3.996 15 C -0.571 4.571 16 C 0.035 3.965 17 N -0.907 5.907 18 Si 1.064 2.936 19 H -0.286 1.286 20 H -0.283 1.283 21 H -0.288 1.288 22 C -0.003 4.003 23 C -0.113 4.113 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.380 0.620 37 H 0.399 0.601 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.008 0.992 42 H 0.272 0.728 43 H 0.013 0.987 44 H 0.031 0.969 45 H 0.037 0.963 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 9.617 -17.536 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.165 4.165 5 C 0.078 3.922 6 C -0.195 4.195 7 O -0.353 6.353 8 C 0.267 3.733 9 O -0.418 6.418 10 N -0.364 5.364 11 C 0.051 3.949 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.034 4.034 15 C -0.590 4.590 16 C -0.171 4.171 17 N -0.543 5.543 18 Si 0.893 3.107 19 H -0.212 1.212 20 H -0.210 1.210 21 H -0.214 1.214 22 C -0.041 4.041 23 C -0.151 4.151 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.233 0.767 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.828 8.296 -16.883 18.900 hybrid contribution 0.020 1.564 -0.398 1.614 sum -1.807 9.860 -17.281 19.978 Atomic orbital electron populations 1.22116 0.94749 1.03656 1.00851 1.21145 0.96562 0.95702 0.97832 1.21861 1.00938 0.96177 1.01584 1.22119 1.02948 0.92894 0.98546 1.21423 0.81273 0.94974 0.94572 1.21799 1.01463 1.01549 0.94730 1.86525 1.18519 1.84586 1.45691 1.21325 0.85165 0.81865 0.84970 1.90703 1.25276 1.66879 1.58898 1.46413 1.30132 1.25417 1.34454 1.21017 0.97937 0.91529 0.84383 0.90620 1.21964 1.00057 0.97077 0.95829 1.19480 0.94904 0.95411 0.93647 1.21016 1.47237 0.93013 0.97686 1.25771 0.92581 1.06379 0.92327 1.70794 1.41593 1.12094 1.29805 0.83618 0.76658 0.74785 0.75665 1.21235 1.20968 1.21425 1.19550 0.95455 0.95155 0.93988 1.21861 1.00993 0.93602 0.98677 0.93771 0.89679 0.93332 0.90845 0.92779 0.92811 0.92800 0.91389 0.89790 0.91477 0.90391 0.90650 0.77106 0.76696 0.94959 0.93239 0.94446 0.97381 0.91501 0.96891 0.95034 0.94450 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.29 37.16 0.31 -1.02 16 2 C -0.09 -0.83 2.59 -90.62 -0.23 -1.07 16 3 C -0.15 -1.23 9.19 37.16 0.34 -0.88 16 4 C -0.13 -1.38 3.72 -26.73 -0.10 -1.48 16 5 C 0.12 1.39 0.99 -91.77 -0.09 1.30 16 6 C -0.14 -1.40 8.34 37.16 0.31 -1.09 16 7 O -0.55 -5.44 8.97 -35.23 -0.32 -5.76 16 8 C 0.48 7.57 6.65 -10.98 -0.07 7.50 16 9 O -0.54 -10.67 15.65 5.56 0.09 -10.58 16 10 N -0.71 -11.30 4.98 -53.85 -0.27 -11.56 16 11 C 0.15 3.04 2.35 -67.97 -0.16 2.88 16 12 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.11 -2.42 5.51 -26.40 -0.15 -2.56 16 14 C 0.00 0.10 6.00 -27.26 -0.16 -0.07 16 15 C -0.57 -15.00 5.49 -98.92 -0.54 -15.54 16 16 C 0.03 0.95 5.45 -17.82 -0.10 0.86 16 17 N -0.91 -26.71 13.66 55.43 0.76 -25.95 16 18 Si 1.06 24.58 27.42 -169.99 -4.66 19.92 16 19 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.17 6.81 56.52 0.38 -5.78 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.00 -0.07 5.54 -27.49 -0.15 -0.23 16 23 C -0.11 -2.22 5.40 -26.63 -0.14 -2.36 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.77 5.76 -51.93 -0.30 0.47 16 26 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.07 0.63 6.05 -51.93 -0.31 0.31 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.67 6.23 -51.93 -0.32 0.35 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.38 3.15 9.04 45.56 0.41 3.56 16 37 H 0.40 5.42 8.04 -40.82 -0.33 5.09 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.99 5.79 -51.93 -0.30 0.69 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.27 7.98 6.36 -40.82 -0.26 7.73 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.03 0.70 5.11 -51.93 -0.27 0.43 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -30.26 348.82 -7.29 -37.55 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.20 Total: 4.90 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.94 Total: -13.77 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.49 Total: -37.52 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.23 Total: -16.34 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.66 Total: 19.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.26 -7.29 -37.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183971973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.022 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds