Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 C 1.52993 * 109.47081 * 120.00527 * 2 1 3 5 5 C 1.53003 * 109.47004 * 173.71265 * 4 2 1 6 6 C 1.52994 * 109.47288 * 305.76193 * 5 4 2 7 7 O 1.42897 * 109.47038 * 65.76506 * 5 4 2 8 8 C 1.50706 * 109.46899 * 185.76368 * 5 4 2 9 9 O 1.21280 * 120.00269 * 25.00534 * 8 5 4 10 10 N 1.34773 * 119.99948 * 204.99895 * 8 5 4 11 11 C 1.46502 * 120.00381 * 180.02562 * 10 8 5 12 12 H 1.09004 * 109.41092 * 324.86183 * 11 10 8 13 13 C 1.52960 * 109.35447 * 84.68228 * 11 10 8 14 14 C 1.53237 * 109.40307 * 183.67426 * 13 11 10 15 15 C 1.51341 * 108.68446 * 305.47983 * 14 13 11 16 16 C 1.37874 * 120.89003 * 231.23048 * 15 14 13 17 17 N 1.31512 * 119.99934 * 179.77905 * 16 15 14 18 18 Si 1.86800 * 120.00056 * 359.77599 * 16 15 14 19 19 H 1.48493 * 109.47245 * 60.00222 * 18 16 15 20 20 H 1.48502 * 109.46817 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47134 * 300.00089 * 18 16 15 22 22 C 1.51272 * 118.25620 * 51.00710 * 15 14 13 23 23 C 1.52955 * 109.41635 * 204.99957 * 11 10 8 24 24 H 1.09004 * 109.46920 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.47277 * 60.00055 * 1 2 3 26 26 H 1.09002 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46920 * 240.00193 * 2 1 3 28 28 H 1.08999 * 109.47524 * 308.70615 * 3 2 1 29 29 H 1.09002 * 109.46839 * 68.70524 * 3 2 1 30 30 H 1.09001 * 109.47436 * 188.69931 * 3 2 1 31 31 H 1.09007 * 109.47722 * 53.71090 * 4 2 1 32 32 H 1.09004 * 109.47382 * 293.71108 * 4 2 1 33 33 H 1.09003 * 109.47641 * 300.00498 * 6 5 4 34 34 H 1.09006 * 109.46785 * 60.00084 * 6 5 4 35 35 H 1.09000 * 109.47813 * 180.02562 * 6 5 4 36 36 H 0.96702 * 113.99848 * 60.00289 * 7 5 4 37 37 H 0.97000 * 119.99994 * 0.02562 * 10 8 5 38 38 H 1.09000 * 109.48406 * 303.64547 * 13 11 10 39 39 H 1.08998 * 109.48668 * 63.69164 * 13 11 10 40 40 H 1.08995 * 109.62779 * 65.08268 * 14 13 11 41 41 H 1.08997 * 109.62307 * 185.66071 * 14 13 11 42 42 H 0.96998 * 120.00097 * 179.97438 * 17 16 15 43 43 H 1.08997 * 109.62325 * 189.17423 * 22 15 14 44 44 H 1.08999 * 109.62069 * 68.80272 * 22 15 14 45 45 H 1.09006 * 109.48028 * 56.38669 * 23 11 10 46 46 H 1.09001 * 109.48432 * 296.34519 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5618 -0.8596 1.1726 6 6 3.9466 -1.5399 -0.1426 7 8 4.1614 0.4362 1.2319 8 6 4.0494 -1.6922 2.3303 9 8 3.3046 -2.4893 2.8601 10 7 5.3131 -1.5511 2.7768 11 6 5.7874 -2.3608 3.9018 12 1 4.9714 -2.5123 4.6085 13 6 6.2689 -3.7168 3.3830 14 6 6.6793 -4.5984 4.5672 15 6 7.6994 -3.8503 5.3980 16 6 8.8967 -4.4384 5.7468 17 7 9.7724 -3.7706 6.4657 18 14 9.2748 -6.1836 5.1986 19 1 9.2612 -6.2504 3.7152 20 1 10.6150 -6.5806 5.7002 21 1 8.2486 -7.1075 5.7451 22 6 7.3734 -2.4382 5.8314 23 6 6.9378 -1.6350 4.6014 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.5553 1.9993 -0.8019 29 1 1.8093 1.9094 0.9575 30 1 3.1189 1.4464 -0.1554 31 1 1.5876 -1.7114 1.3072 32 1 1.7715 -0.1467 2.1356 33 1 3.4893 -2.5283 -0.1879 34 1 3.5939 -0.9376 -0.9799 35 1 5.0308 -1.6388 -0.1970 36 1 3.9597 0.9262 2.0408 37 1 5.9088 -0.9133 2.3532 38 1 5.4638 -4.2015 2.8308 39 1 7.1251 -3.5709 2.7244 40 1 5.8049 -4.8200 5.1790 41 1 7.1165 -5.5263 4.1986 42 1 10.6146 -4.1845 6.7114 43 1 8.2564 -1.9783 6.2751 44 1 6.5644 -2.4571 6.5617 45 1 6.6067 -0.6443 4.9127 46 1 7.7782 -1.5384 3.9140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183971977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = -124.659868 kcal Electronic energy + Delta-G solvation = -23649.477473 eV Core-core repulsion = 20344.519038 eV Total energy + Delta-G solvation = -3304.958435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35028 -38.03408 -36.58427 -35.29595 -33.61856 -31.71001 -31.28335 -29.68582 -27.38190 -27.23148 -26.98223 -23.80356 -21.92808 -21.47891 -20.11533 -19.82571 -19.51881 -17.85895 -16.36244 -15.98683 -15.63057 -15.35532 -14.87233 -14.48307 -14.38710 -13.77062 -13.62376 -13.18467 -12.97380 -12.77172 -12.58006 -12.53558 -12.26608 -12.22526 -12.06874 -11.97311 -11.77556 -11.62628 -11.26115 -11.03042 -10.88480 -10.80679 -10.71548 -10.68834 -10.36938 -10.18541 -10.02772 -9.75943 -9.27839 -8.97910 -8.83065 -8.49216 -8.34708 -6.12308 -4.03132 2.79429 3.28359 3.35064 3.37187 3.40778 4.00233 4.37696 4.54408 4.61006 4.77290 4.95505 5.00544 5.15580 5.19536 5.42025 5.47850 5.54989 5.62644 5.66755 5.72585 5.74528 5.81838 5.86005 5.91036 6.01709 6.05990 6.17255 6.23496 6.30974 6.45513 6.46373 6.68548 6.75077 6.86494 6.93626 7.03978 7.18410 7.31607 7.40629 7.62093 7.69030 7.75803 7.93544 8.35919 8.51352 8.93729 9.52743 10.97385 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036834 B = 0.003628 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.975962 B = 7715.587928 C = 7977.416046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.127 4.127 5 C 0.121 3.879 6 C -0.139 4.139 7 O -0.547 6.547 8 C 0.482 3.518 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.152 3.848 12 H 0.077 0.923 13 C -0.113 4.113 14 C -0.009 4.009 15 C -0.490 4.490 16 C 0.077 3.923 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.274 1.274 22 C 0.013 3.987 23 C -0.114 4.114 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.379 0.621 37 H 0.399 0.601 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.020 0.980 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.061 0.939 44 H 0.005 0.995 45 H 0.035 0.965 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 9.213 -12.952 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.165 4.165 5 C 0.077 3.923 6 C -0.196 4.196 7 O -0.353 6.353 8 C 0.266 3.734 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.049 3.951 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.047 4.047 15 C -0.509 4.509 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.200 1.200 20 H -0.218 1.218 21 H -0.200 1.200 22 C -0.024 4.024 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.233 0.767 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.024 0.976 45 H 0.054 0.946 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.761 8.452 -13.041 20.109 hybrid contribution 0.379 -0.531 0.092 0.659 sum -12.382 7.921 -12.950 19.590 Atomic orbital electron populations 1.21861 0.95488 1.01650 1.01546 1.21157 0.95308 0.96922 0.97946 1.22076 1.03213 0.94988 1.00871 1.22122 0.93436 1.02480 0.98439 1.21431 0.93106 0.82988 0.94733 1.21803 1.02828 1.00392 0.94575 1.86542 1.75543 1.28036 1.45181 1.21314 0.82673 0.84380 0.84985 1.90698 1.55637 1.37390 1.58124 1.46436 1.12635 1.41998 1.35273 1.21074 0.96870 0.90806 0.86302 0.90512 1.21891 0.98543 0.95436 0.99310 1.19604 0.97049 0.94647 0.93370 1.20045 1.00395 0.98769 1.31727 1.24825 0.95510 0.97554 0.94699 1.69815 1.08482 1.37253 1.37243 0.86648 0.77143 0.85072 0.79177 1.20006 1.21846 1.19967 1.19327 0.97338 0.94293 0.91488 1.21922 0.95855 0.97049 1.00372 0.92829 0.92827 0.92766 0.90774 0.93753 0.93337 0.89910 0.89755 0.91437 0.90628 0.90419 0.91396 0.77258 0.76650 0.94528 0.93019 0.96170 0.95629 0.92495 0.92080 0.97614 0.94606 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.10 -0.83 2.60 -90.63 -0.24 -1.06 16 3 C -0.15 -1.26 8.29 37.16 0.31 -0.96 16 4 C -0.13 -1.34 3.72 -26.73 -0.10 -1.44 16 5 C 0.12 1.37 0.99 -91.77 -0.09 1.28 16 6 C -0.14 -1.45 8.32 37.15 0.31 -1.14 16 7 O -0.55 -5.28 9.09 -35.23 -0.32 -5.60 16 8 C 0.48 7.46 6.65 -10.98 -0.07 7.39 16 9 O -0.54 -10.49 15.63 5.56 0.09 -10.40 16 10 N -0.71 -11.18 4.98 -53.85 -0.27 -11.45 16 11 C 0.15 2.97 2.35 -67.97 -0.16 2.81 16 12 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 13 C -0.11 -2.39 5.50 -26.63 -0.15 -2.54 16 14 C -0.01 -0.20 5.58 -27.45 -0.15 -0.36 16 15 C -0.49 -12.90 5.53 -98.89 -0.55 -13.44 16 16 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 17 N -0.89 -25.42 12.73 55.43 0.71 -24.72 16 18 Si 0.89 21.39 26.81 -169.99 -4.56 16.84 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.01 0.33 5.96 -27.49 -0.16 0.16 16 23 C -0.11 -2.30 5.41 -26.64 -0.14 -2.44 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.63 5.98 -51.93 -0.31 0.32 16 28 H 0.04 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.08 0.73 5.91 -51.93 -0.31 0.43 16 31 H 0.08 1.02 7.65 -51.93 -0.40 0.63 16 32 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.69 6.20 -51.93 -0.32 0.37 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.38 2.87 9.04 45.56 0.41 3.28 16 37 H 0.40 5.42 8.04 -40.82 -0.33 5.09 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.60 5.18 -51.93 -0.27 0.33 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 44 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -29.64 350.96 -7.35 -36.99 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.33 Total: 3.64 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.95 Total: -10.59 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.23 Total: -16.00 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.56 Total: 16.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.64 -7.35 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183971977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.673 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds