Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47145 * 2 1 4 4 C 1.52995 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47156 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00114 * 269.99852 * 5 4 3 7 7 C 1.50701 * 109.47173 * 270.00011 * 6 5 4 8 8 H 1.07997 * 119.99782 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99957 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99901 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99978 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46906 * 90.00269 * 11 9 7 13 13 H 1.48493 * 109.47295 * 210.00188 * 11 9 7 14 14 H 1.48496 * 109.47279 * 330.00676 * 11 9 7 15 15 C 1.34778 * 120.00413 * 89.99955 * 5 4 3 16 16 O 1.21511 * 119.99862 * 359.97438 * 15 5 4 17 17 O 1.34637 * 120.00295 * 180.02562 * 15 5 4 18 18 C 1.45200 * 116.99977 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46978 * 89.99768 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47046 * 209.99558 * 18 17 15 24 24 H 1.09004 * 109.47208 * 60.00231 * 1 2 3 25 25 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47118 * 299.99837 * 1 2 3 27 27 H 1.08998 * 109.47777 * 239.99856 * 2 1 3 28 28 H 1.09004 * 109.47208 * 119.99768 * 2 1 3 29 29 H 1.08995 * 109.46726 * 59.99804 * 3 2 1 30 30 H 1.08996 * 109.46774 * 299.99614 * 3 2 1 31 31 H 1.09006 * 109.47426 * 59.99760 * 4 3 2 32 32 H 1.09004 * 109.47208 * 299.99768 * 4 3 2 33 33 H 1.09004 * 109.46445 * 29.99834 * 6 5 4 34 34 H 1.08999 * 109.47212 * 149.99756 * 6 5 4 35 35 H 0.97004 * 120.00133 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47097 * 329.99834 * 18 17 15 37 37 H 1.08996 * 109.47853 * 300.00072 * 19 18 17 38 38 H 1.09002 * 109.47153 * 60.00100 * 19 18 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 41 41 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 42 42 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 43 43 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 45 45 H 1.08992 * 109.47399 * 300.00084 * 23 18 17 46 46 H 1.09004 * 109.46724 * 60.00570 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 5.7251 3.2786 -1.7042 8 1 6.3823 2.6741 -1.0968 9 6 6.1879 3.8339 -2.8783 10 7 5.3876 4.5704 -3.6176 11 14 7.9521 3.5413 -3.4181 12 1 8.0157 2.3204 -4.2611 13 1 8.4303 4.7089 -4.2010 14 1 8.8126 3.3617 -2.2213 15 6 4.2834 3.4585 1.1674 16 8 4.0809 2.8852 2.2195 17 8 4.7317 4.7280 1.1680 18 6 4.9515 5.3489 2.4620 19 6 6.3888 5.0866 2.9159 20 6 6.6207 5.7414 4.2792 21 6 6.3884 7.2496 4.1667 22 6 4.9511 7.5118 3.7127 23 6 4.7192 6.8570 2.3500 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9337 0.9286 0.8892 33 1 3.6208 3.1314 -2.0280 34 1 4.1350 4.5843 -1.1375 35 1 5.7131 4.9608 -4.4438 36 1 4.2580 4.9275 3.1897 37 1 6.5545 4.0123 2.9957 38 1 7.0823 5.5081 2.1882 39 1 7.6448 5.5550 4.6024 40 1 5.9271 5.3203 5.0071 41 1 7.0819 7.6707 3.4388 42 1 6.5532 7.7159 5.1380 43 1 4.7855 8.5862 3.6330 44 1 4.2576 7.0907 4.4406 45 1 5.4126 7.2785 1.6224 46 1 3.6951 7.0438 2.0266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193620563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = -123.689727 kcal Electronic energy + Delta-G solvation = -23468.214083 eV Core-core repulsion = 20163.297716 eV Total energy + Delta-G solvation = -3304.916366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93462 -38.11045 -36.24477 -34.96925 -34.17302 -32.41816 -30.70336 -29.89019 -28.82425 -26.87634 -23.81762 -23.04315 -22.51792 -22.02704 -20.87454 -19.72541 -19.44958 -17.14038 -16.47527 -16.39891 -15.36468 -15.18310 -15.02857 -14.61280 -14.20477 -14.07078 -13.76007 -13.64641 -12.99664 -12.85514 -12.63528 -12.39183 -12.22200 -12.15074 -12.04525 -11.50185 -11.25893 -11.05448 -10.98873 -10.94036 -10.89831 -10.80817 -10.69322 -10.61595 -10.51848 -10.25475 -10.18840 -10.02686 -9.73460 -9.66588 -9.53386 -8.48195 -7.74857 -6.09584 -4.14919 3.00185 3.27238 3.33867 3.38460 3.66911 4.37612 4.63750 4.79713 4.81921 5.04265 5.19922 5.21567 5.24565 5.29906 5.33751 5.35748 5.49991 5.55279 5.57686 5.65489 5.68942 5.85572 5.94459 5.97419 6.02281 6.04145 6.04877 6.13770 6.16375 6.22373 6.26395 6.28630 6.35396 6.44004 6.49464 6.57242 6.66824 6.81136 7.17125 7.32855 7.59860 7.84521 8.16112 8.35559 8.87210 9.20498 9.51315 10.98036 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.006575 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.010776 B = 4257.823923 C = 6626.681265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.136 3.864 5 N -0.580 5.580 6 C 0.243 3.757 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.649 3.351 16 O -0.607 6.607 17 O -0.346 6.346 18 C 0.108 3.892 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.117 4.117 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 0.780 11.136 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.174 4.174 4 C 0.014 3.986 5 N -0.316 5.316 6 C 0.124 3.876 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.404 3.596 16 O -0.500 6.500 17 O -0.259 6.259 18 C 0.052 3.948 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.155 4.155 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.540 0.791 11.280 11.848 hybrid contribution 1.024 -0.135 -0.478 1.138 sum -2.516 0.656 10.802 11.110 Atomic orbital electron populations 1.21753 0.96146 1.01079 1.01741 1.21435 0.95591 0.96859 1.01951 1.22008 0.96391 0.96627 1.02384 1.21306 0.92847 0.81654 1.02808 1.47128 1.65446 1.13479 1.05581 1.19407 0.96632 0.93048 0.78549 1.21466 0.96821 1.32055 1.06530 0.92334 1.24910 0.97823 0.94840 0.96270 1.69929 1.35679 1.33311 1.14302 0.86525 0.84679 0.77754 0.78668 1.20574 1.21085 1.19874 1.18076 0.76512 0.80639 0.84407 1.90851 1.60374 1.67530 1.31258 1.86472 1.78942 1.26702 1.33764 1.22476 0.96956 0.92284 0.83094 1.21932 0.96669 1.01624 0.97135 1.21476 1.01569 0.95213 0.96879 1.21599 0.96979 0.96327 1.01125 1.21477 0.96985 1.00335 0.96302 1.21593 1.02914 0.93013 0.97960 0.92776 0.93100 0.92960 0.91863 0.92081 0.92029 0.91656 0.89923 0.90928 0.94619 0.93912 0.92669 0.90279 0.91312 0.90888 0.91710 0.91895 0.91653 0.92025 0.91368 0.91877 0.90567 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.14 -2.19 5.54 -26.73 -0.15 -2.34 16 4 C 0.14 2.58 5.41 -4.05 -0.02 2.55 16 5 N -0.58 -13.04 2.46 -180.86 -0.44 -13.48 16 6 C 0.24 6.16 5.17 -5.19 -0.03 6.13 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.65 14.82 8.37 54.06 0.45 15.27 16 16 O -0.61 -14.12 15.18 -19.28 -0.29 -14.41 16 17 O -0.35 -7.57 8.70 -40.32 -0.35 -7.92 16 18 C 0.11 1.87 2.46 -26.73 -0.07 1.81 16 19 C -0.14 -2.15 5.56 -26.73 -0.15 -2.30 16 20 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 22 C -0.11 -1.25 5.92 -26.76 -0.16 -1.41 16 23 C -0.12 -1.67 5.58 -26.75 -0.15 -1.82 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.52 8.07 -51.93 -0.42 1.11 16 32 H 0.07 1.37 7.42 -51.93 -0.39 0.98 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 1.17 7.37 -51.93 -0.38 0.78 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -30.23 369.66 -9.31 -39.53 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.71 Total: 0.67 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.79 Total: -1.41 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.29 Total: -38.32 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.64 Total: -22.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.23 -9.31 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193620563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.157 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds