Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47521 * 2 1 4 4 C 1.52991 * 109.47205 * 64.99710 * 3 2 1 5 5 C 1.52997 * 109.47262 * 186.42904 * 4 3 2 6 6 C 1.52993 * 109.47078 * 185.00009 * 3 2 1 7 7 O 1.45203 * 109.47349 * 173.51946 * 6 3 2 8 8 C 1.34634 * 117.00352 * 180.02562 * 7 6 3 9 9 O 1.21513 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00109 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.40957 * 35.13659 * 11 10 8 13 13 C 1.52953 * 109.41791 * 154.99696 * 11 10 8 14 14 C 1.53227 * 109.40780 * 183.70799 * 13 11 10 15 15 C 1.51272 * 108.53203 * 305.36958 * 14 13 11 16 16 C 1.37875 * 120.85161 * 231.32442 * 15 14 13 17 17 N 1.31515 * 119.99967 * 0.02562 * 16 15 14 18 18 Si 1.86804 * 120.00100 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47202 * 90.00025 * 18 16 15 20 20 H 1.48496 * 109.47010 * 210.00127 * 18 16 15 21 21 H 1.48503 * 109.46867 * 329.99831 * 18 16 15 22 22 C 1.51267 * 118.30107 * 51.35060 * 15 14 13 23 23 C 1.52963 * 109.41225 * 275.35318 * 11 10 8 24 24 H 1.09001 * 109.47165 * 300.00700 * 1 2 3 25 25 H 1.09006 * 109.46747 * 59.99505 * 1 2 3 26 26 H 1.08991 * 109.47740 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47165 * 239.99299 * 2 1 3 28 28 H 1.09000 * 109.46805 * 119.99595 * 2 1 3 29 29 H 1.09005 * 109.46519 * 304.99997 * 3 2 1 30 30 H 1.08999 * 109.47304 * 306.42597 * 4 3 2 31 31 H 1.08997 * 109.47438 * 66.42838 * 4 3 2 32 32 H 1.08996 * 109.47513 * 171.62757 * 5 4 3 33 33 H 1.09001 * 109.46936 * 291.62765 * 5 4 3 34 34 H 1.09006 * 109.47200 * 51.62756 * 5 4 3 35 35 H 1.09005 * 109.47383 * 293.51708 * 6 3 2 36 36 H 1.09003 * 109.47404 * 53.51660 * 6 3 2 37 37 H 0.97002 * 120.00326 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.48047 * 303.68659 * 13 11 10 39 39 H 1.08999 * 109.48254 * 63.70742 * 13 11 10 40 40 H 1.08995 * 109.62921 * 65.08142 * 14 13 11 41 41 H 1.08997 * 109.62949 * 185.66354 * 14 13 11 42 42 H 0.97005 * 119.99813 * 179.97438 * 17 16 15 43 43 H 1.09006 * 109.62511 * 68.36354 * 22 15 14 44 44 H 1.08999 * 109.62838 * 188.74228 * 22 15 14 45 45 H 1.08999 * 109.47822 * 296.27055 * 23 11 10 46 46 H 1.08998 * 109.48131 * 56.31381 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6354 2.1266 1.3072 5 6 2.0034 3.6102 1.2417 6 6 3.5649 1.4442 -0.1257 7 8 4.0363 2.8089 -0.2799 8 6 5.3651 2.9861 -0.4049 9 8 6.1105 2.0267 -0.3851 10 7 5.8685 4.2278 -0.5508 11 6 7.3144 4.4208 -0.6862 12 1 7.7400 3.5886 -1.2471 13 6 7.5852 5.7282 -1.4324 14 6 9.0932 5.8842 -1.6554 15 6 9.7910 5.7739 -0.3178 16 6 10.6931 6.7334 0.0903 17 7 10.9561 7.7614 -0.6865 18 14 11.5417 6.5731 1.7467 19 1 12.8053 5.8101 1.5838 20 1 11.8452 7.9253 2.2802 21 1 10.6492 5.8566 2.6929 22 6 9.4742 4.5837 0.5604 23 6 7.9524 4.4748 0.7030 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6054 1.9815 -0.8419 30 1 0.5599 2.0251 1.4526 31 1 2.1602 1.6585 2.1400 32 1 1.5845 4.1269 2.1051 33 1 3.0882 3.7159 1.2461 34 1 1.5996 4.0447 0.3272 35 1 4.0039 1.0073 0.7713 36 1 3.8584 0.8578 -0.9965 37 1 5.2735 4.9937 -0.5661 38 1 7.0753 5.7093 -2.3957 39 1 7.2161 6.5669 -0.8421 40 1 9.4485 5.0965 -2.3197 41 1 9.2991 6.8595 -2.0963 42 1 11.5905 8.4367 -0.3992 43 1 9.8648 3.6755 0.1011 44 1 9.9277 4.7217 1.5419 45 1 7.5748 5.3431 1.2429 46 1 7.7028 3.5675 1.2532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194716640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -123.745234 kcal Electronic energy + Delta-G solvation = -23050.950239 eV Core-core repulsion = 19746.031466 eV Total energy + Delta-G solvation = -3304.918773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26591 -38.12447 -36.92664 -35.44345 -33.77535 -31.89371 -31.56847 -29.70314 -29.06058 -27.20966 -24.41301 -22.99800 -22.40252 -21.54364 -20.70547 -20.21755 -19.62411 -18.16797 -16.80732 -16.43409 -16.03273 -15.03012 -14.90122 -14.82937 -14.45757 -14.15109 -13.80084 -13.22486 -13.11877 -12.78268 -12.73670 -12.41766 -12.25826 -12.13674 -12.08513 -11.90306 -11.62906 -11.34745 -11.08627 -11.03299 -10.87952 -10.78208 -10.73022 -10.69531 -10.35499 -10.14288 -10.05142 -9.95600 -9.55662 -9.04928 -8.90252 -8.50921 -8.34519 -6.11661 -4.02629 2.45981 3.19273 3.27815 3.35970 3.37225 4.30596 4.37841 4.46726 4.57426 4.84890 4.94508 5.12542 5.16375 5.17765 5.27150 5.32423 5.41299 5.57079 5.60679 5.63592 5.66829 5.72456 5.85194 5.92435 5.94699 6.00583 6.14572 6.16689 6.33029 6.41249 6.46345 6.55322 6.69764 6.79665 6.88154 6.94412 7.09616 7.21436 7.42687 7.63494 7.69509 7.74928 7.90179 8.36223 8.71974 8.94485 9.53157 10.97722 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.003170 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.394578 B = 8830.033137 C = 8944.626001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.153 4.153 6 C 0.092 3.908 7 O -0.368 6.368 8 C 0.638 3.362 9 O -0.577 6.577 10 N -0.702 5.702 11 C 0.170 3.830 12 H 0.080 0.920 13 C -0.114 4.114 14 C 0.013 3.987 15 C -0.489 4.489 16 C 0.076 3.924 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.264 1.264 22 C -0.019 4.019 23 C -0.115 4.115 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.007 0.993 41 H 0.062 0.938 42 H 0.264 0.736 43 H 0.019 0.981 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 -9.917 1.940 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.156 4.156 5 C -0.210 4.210 6 C 0.017 3.983 7 O -0.283 6.283 8 C 0.391 3.609 9 O -0.467 6.467 10 N -0.360 5.360 11 C 0.068 3.932 12 H 0.098 0.902 13 C -0.152 4.152 14 C -0.025 4.025 15 C -0.508 4.508 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.057 4.057 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.845 -10.274 1.933 21.551 hybrid contribution 0.242 0.254 0.909 0.975 sum -18.603 -10.020 2.842 21.321 Atomic orbital electron populations 1.21802 0.95250 1.01694 1.02147 1.21479 0.96337 0.95204 1.02554 1.21351 0.92898 0.96868 0.99671 1.21619 1.00987 0.96524 0.96455 1.21886 1.03127 0.95132 1.00897 1.22952 0.93604 0.79597 1.02158 1.86334 1.23236 1.32524 1.86184 1.18338 0.80842 0.84972 0.76765 1.90976 1.59174 1.40089 1.56413 1.45337 1.09835 1.04918 1.75875 1.21130 0.74631 0.99504 0.97899 0.90168 1.21964 1.01588 0.94583 0.97102 1.19351 0.88214 0.98863 0.96055 1.20055 1.23228 1.05458 1.02023 1.24842 0.95999 0.94668 0.97123 1.69833 1.34480 1.11397 1.37081 0.86676 0.79991 0.77036 0.84759 1.20374 1.21665 1.18922 1.19793 0.91175 0.97390 0.97317 1.21934 0.99209 0.99232 0.94983 0.92281 0.92608 0.92629 0.91563 0.91550 0.89972 0.91743 0.92134 0.93541 0.91033 0.92827 0.91416 0.91495 0.76671 0.94378 0.92478 0.97432 0.91907 0.92572 0.96217 0.94531 0.92893 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.68 37.16 0.36 -0.58 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.79 2.20 -90.63 -0.20 -0.99 16 4 C -0.12 -1.03 5.28 -26.74 -0.14 -1.18 16 5 C -0.15 -1.52 9.01 37.16 0.33 -1.19 16 6 C 0.09 1.08 4.81 37.15 0.18 1.26 16 7 O -0.37 -5.18 7.10 -40.31 -0.29 -5.46 16 8 C 0.64 11.09 8.71 54.05 0.47 11.56 16 9 O -0.58 -11.95 15.80 -19.28 -0.30 -12.25 16 10 N -0.70 -11.74 5.08 -58.77 -0.30 -12.04 16 11 C 0.17 3.35 2.35 -67.97 -0.16 3.19 16 12 H 0.08 1.74 7.58 -51.92 -0.39 1.35 16 13 C -0.11 -2.30 5.40 -26.64 -0.14 -2.44 16 14 C 0.01 0.32 5.97 -27.49 -0.16 0.15 16 15 C -0.49 -12.73 5.51 -98.92 -0.55 -13.27 16 16 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 17 N -0.89 -25.24 12.73 55.43 0.71 -24.54 16 18 Si 0.89 21.00 27.53 -169.99 -4.68 16.32 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -6.07 6.11 56.52 0.35 -5.73 16 22 C -0.02 -0.44 5.59 -27.49 -0.15 -0.60 16 23 C -0.11 -2.43 5.50 -26.63 -0.15 -2.58 16 24 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.06 0.48 6.29 -51.93 -0.33 0.15 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.85 5.89 -51.93 -0.31 0.54 16 34 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.40 5.63 8.71 -40.82 -0.36 5.28 16 38 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.86 4.59 -51.93 -0.24 0.62 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -29.21 354.48 -8.35 -37.56 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.27 Total: 0.76 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.55 Total: -5.69 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.41 Total: -36.57 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.59 Total: -17.72 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.68 Total: 16.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.21 -8.35 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194716640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.187 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds