Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47521 * 2 1 4 4 C 1.52991 * 109.47205 * 64.99710 * 3 2 1 5 5 C 1.52997 * 109.47262 * 186.42904 * 4 3 2 6 6 C 1.52993 * 109.47078 * 185.00009 * 3 2 1 7 7 O 1.45203 * 109.47349 * 173.51946 * 6 3 2 8 8 C 1.34634 * 117.00352 * 180.02562 * 7 6 3 9 9 O 1.21513 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00109 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.40957 * 35.13659 * 11 10 8 13 13 C 1.52953 * 109.41791 * 154.99696 * 11 10 8 14 14 C 1.53227 * 109.40780 * 183.70799 * 13 11 10 15 15 C 1.51272 * 108.53203 * 305.36958 * 14 13 11 16 16 C 1.37875 * 120.85161 * 231.32442 * 15 14 13 17 17 N 1.31515 * 119.99967 * 0.02562 * 16 15 14 18 18 Si 1.86804 * 120.00100 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47202 * 90.00025 * 18 16 15 20 20 H 1.48496 * 109.47010 * 210.00127 * 18 16 15 21 21 H 1.48503 * 109.46867 * 329.99831 * 18 16 15 22 22 C 1.51267 * 118.30107 * 51.35060 * 15 14 13 23 23 C 1.52963 * 109.41225 * 275.35318 * 11 10 8 24 24 H 1.09001 * 109.47165 * 300.00700 * 1 2 3 25 25 H 1.09006 * 109.46747 * 59.99505 * 1 2 3 26 26 H 1.08991 * 109.47740 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47165 * 239.99299 * 2 1 3 28 28 H 1.09000 * 109.46805 * 119.99595 * 2 1 3 29 29 H 1.09005 * 109.46519 * 304.99997 * 3 2 1 30 30 H 1.08999 * 109.47304 * 306.42597 * 4 3 2 31 31 H 1.08997 * 109.47438 * 66.42838 * 4 3 2 32 32 H 1.08996 * 109.47513 * 171.62757 * 5 4 3 33 33 H 1.09001 * 109.46936 * 291.62765 * 5 4 3 34 34 H 1.09006 * 109.47200 * 51.62756 * 5 4 3 35 35 H 1.09005 * 109.47383 * 293.51708 * 6 3 2 36 36 H 1.09003 * 109.47404 * 53.51660 * 6 3 2 37 37 H 0.97002 * 120.00326 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.48047 * 303.68659 * 13 11 10 39 39 H 1.08999 * 109.48254 * 63.70742 * 13 11 10 40 40 H 1.08995 * 109.62921 * 65.08142 * 14 13 11 41 41 H 1.08997 * 109.62949 * 185.66354 * 14 13 11 42 42 H 0.97005 * 119.99813 * 179.97438 * 17 16 15 43 43 H 1.09006 * 109.62511 * 68.36354 * 22 15 14 44 44 H 1.08999 * 109.62838 * 188.74228 * 22 15 14 45 45 H 1.08999 * 109.47822 * 296.27055 * 23 11 10 46 46 H 1.08998 * 109.48131 * 56.31381 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6354 2.1266 1.3072 5 6 2.0034 3.6102 1.2417 6 6 3.5649 1.4442 -0.1257 7 8 4.0363 2.8089 -0.2799 8 6 5.3651 2.9861 -0.4049 9 8 6.1105 2.0267 -0.3851 10 7 5.8685 4.2278 -0.5508 11 6 7.3144 4.4208 -0.6862 12 1 7.7400 3.5886 -1.2471 13 6 7.5852 5.7282 -1.4324 14 6 9.0932 5.8842 -1.6554 15 6 9.7910 5.7739 -0.3178 16 6 10.6931 6.7334 0.0903 17 7 10.9561 7.7614 -0.6865 18 14 11.5417 6.5731 1.7467 19 1 12.8053 5.8101 1.5838 20 1 11.8452 7.9253 2.2802 21 1 10.6492 5.8566 2.6929 22 6 9.4742 4.5837 0.5604 23 6 7.9524 4.4748 0.7030 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6054 1.9815 -0.8419 30 1 0.5599 2.0251 1.4526 31 1 2.1602 1.6585 2.1400 32 1 1.5845 4.1269 2.1051 33 1 3.0882 3.7159 1.2461 34 1 1.5996 4.0447 0.3272 35 1 4.0039 1.0073 0.7713 36 1 3.8584 0.8578 -0.9965 37 1 5.2735 4.9937 -0.5661 38 1 7.0753 5.7093 -2.3957 39 1 7.2161 6.5669 -0.8421 40 1 9.4485 5.0965 -2.3197 41 1 9.2991 6.8595 -2.0963 42 1 11.5905 8.4367 -0.3992 43 1 9.8648 3.6755 0.1011 44 1 9.9277 4.7217 1.5419 45 1 7.5748 5.3431 1.2429 46 1 7.7028 3.5675 1.2532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194716640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -140.074448 kcal Electronic energy + Delta-G solvation = -23051.658327 eV Core-core repulsion = 19746.031466 eV Total energy + Delta-G solvation = -3305.626861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58734 -39.39136 -38.21453 -36.64981 -35.47994 -33.42774 -32.52330 -31.51118 -30.01977 -28.89372 -25.37047 -24.16048 -23.55153 -23.33304 -22.13441 -21.33441 -20.99209 -19.55902 -18.00258 -17.93547 -17.66228 -16.40944 -16.31134 -16.02345 -15.53126 -15.15891 -14.91433 -14.70878 -14.56396 -14.22120 -14.10354 -13.89680 -13.61773 -13.45386 -13.09837 -12.81023 -12.77618 -12.68240 -12.59624 -12.56554 -12.11664 -11.99383 -11.88910 -11.75630 -11.62075 -11.55116 -11.44956 -11.38555 -11.00065 -10.90471 -10.71117 -10.54726 -10.00026 -8.16658 -6.11096 1.19314 1.39910 1.43011 1.50573 1.79930 2.41644 3.07506 3.24435 3.74980 3.80273 3.97281 4.05944 4.16452 4.33205 4.35287 4.45640 4.46187 4.49030 4.61778 4.68541 4.70274 4.80083 4.89528 4.94997 4.95832 4.98649 5.05993 5.09928 5.14157 5.21137 5.23549 5.24880 5.29561 5.37688 5.41692 5.52042 5.54040 5.55395 5.61269 5.66016 5.75886 5.82413 6.34673 6.50771 6.94434 7.37628 7.47224 8.93692 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.003170 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.394578 B = 8830.033137 C = 8944.626001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.085 3.915 7 O -0.356 6.356 8 C 0.641 3.359 9 O -0.612 6.612 10 N -0.692 5.692 11 C 0.183 3.817 12 H 0.061 0.939 13 C -0.100 4.100 14 C 0.008 3.992 15 C -0.499 4.499 16 C 0.026 3.974 17 N -0.928 5.928 18 Si 0.937 3.063 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.251 1.251 22 C -0.020 4.020 23 C -0.108 4.108 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.000 1.000 41 H 0.037 0.963 42 H 0.264 0.736 43 H 0.015 0.985 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.471 -10.734 2.816 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.099 4.099 4 C -0.155 4.155 5 C -0.210 4.210 6 C 0.011 3.989 7 O -0.269 6.269 8 C 0.394 3.606 9 O -0.504 6.504 10 N -0.350 5.350 11 C 0.080 3.920 12 H 0.080 0.920 13 C -0.139 4.139 14 C -0.030 4.030 15 C -0.519 4.519 16 C -0.172 4.172 17 N -0.567 5.567 18 Si 0.764 3.236 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.176 1.176 22 C -0.058 4.058 23 C -0.147 4.147 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.081 -11.093 2.815 23.987 hybrid contribution 0.871 0.448 0.585 1.141 sum -20.210 -10.644 3.400 23.094 Atomic orbital electron populations 1.21793 0.94117 1.02357 1.02431 1.21483 0.97220 0.93893 1.02774 1.21352 0.90436 0.98174 0.99939 1.21631 1.02109 0.95583 0.96148 1.21872 1.01631 0.96158 1.01360 1.23263 0.95544 0.78343 1.01780 1.86386 1.20990 1.33986 1.85547 1.18396 0.81650 0.84450 0.76075 1.90958 1.60339 1.41216 1.57896 1.44962 1.08848 1.05583 1.75650 1.20722 0.76214 0.98392 0.96685 0.92031 1.21725 0.98649 0.94918 0.98572 1.19311 0.91239 0.97101 0.95318 1.20586 1.22705 1.05805 1.02755 1.25550 0.96881 0.94719 1.00096 1.69951 1.35632 1.12391 1.38751 0.85863 0.79180 0.76988 0.81617 1.20310 1.21653 1.17564 1.19792 0.93097 0.96133 0.96812 1.21817 0.97436 0.99501 0.95918 0.91880 0.92424 0.91846 0.91437 0.91357 0.89696 0.89917 0.92385 0.92817 0.93134 0.92669 0.92007 0.91761 0.74838 0.91997 0.92110 0.98183 0.94473 0.92718 0.96660 0.94395 0.92405 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.68 71.98 0.70 -0.76 16 2 C -0.12 -1.43 5.40 30.59 0.17 -1.26 16 3 C -0.08 -1.26 2.20 -10.80 -0.02 -1.29 16 4 C -0.12 -1.78 5.28 30.59 0.16 -1.62 16 5 C -0.15 -2.74 9.01 71.98 0.65 -2.09 16 6 C 0.09 1.90 4.81 71.98 0.35 2.25 16 7 O -0.36 -9.47 7.10 -55.44 -0.39 -9.86 16 8 C 0.64 21.43 8.71 129.79 1.13 22.56 16 9 O -0.61 -24.92 15.80 19.80 0.31 -24.61 16 10 N -0.69 -21.89 5.08 -570.25 -2.90 -24.79 16 11 C 0.18 6.99 2.35 44.96 0.11 7.09 16 12 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 13 C -0.10 -3.93 5.40 30.65 0.17 -3.76 16 14 C 0.01 0.41 5.97 30.11 0.18 0.59 16 15 C -0.50 -26.01 5.51 -16.17 -0.09 -26.10 16 16 C 0.03 1.42 5.46 84.65 0.46 1.89 16 17 N -0.93 -53.49 12.73 21.45 0.27 -53.21 16 18 Si 0.94 42.91 27.53 68.60 1.89 44.80 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.25 -10.87 6.11 99.48 0.61 -10.26 16 22 C -0.02 -0.95 5.59 30.11 0.17 -0.78 16 23 C -0.11 -4.42 5.50 30.66 0.17 -4.25 16 24 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 25 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.32 8.11 -2.38 -0.02 1.30 16 30 H 0.08 0.98 6.29 -2.39 -0.02 0.97 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.12 5.89 -2.39 -0.01 1.11 16 34 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 35 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 36 H 0.06 1.47 8.13 -2.39 -0.02 1.46 16 37 H 0.42 10.70 8.71 -92.71 -0.81 9.89 16 38 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.04 1.99 7.07 -2.39 -0.02 1.97 16 42 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 43 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.04 1.73 4.59 -2.39 -0.01 1.72 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -62.27 354.48 3.51 -58.76 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.04 Total: 16.45 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.29 Total: -7.54 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -2.62 Total: -78.00 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.08 Total: -34.47 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.89 Total: 44.80 kcal Total: -62.27 3.51 -58.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194716640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.317 kcal (2) G-P(sol) polarization free energy of solvation -62.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds