Wall clock time and date at job start Tue Mar 31 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47305 * 2 1 4 4 C 1.34233 * 117.00034 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00237 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47404 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.53833 * 54.89295 * 7 6 4 9 9 C 1.53119 * 109.49963 * 294.80029 * 7 6 4 10 10 C 1.53124 * 109.15284 * 182.40003 * 9 7 6 11 11 C 1.53032 * 109.27658 * 57.66779 * 10 9 7 12 12 N 1.46850 * 109.51651 * 300.80602 * 11 10 9 13 13 C 1.46907 * 110.99948 * 185.84621 * 12 11 10 14 14 H 1.08996 * 109.46680 * 180.65270 * 13 12 11 15 15 C 1.50703 * 109.46897 * 300.65302 * 13 12 11 16 16 H 1.07990 * 120.00059 * 359.97438 * 15 13 12 17 17 C 1.37874 * 119.99459 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00572 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99757 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47133 * 59.99809 * 19 17 15 21 21 H 1.48502 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47410 * 299.99692 * 19 17 15 23 23 C 1.53001 * 109.47143 * 60.65321 * 13 12 11 24 24 C 1.53002 * 109.46891 * 62.21284 * 23 13 12 25 25 C 1.46845 * 111.19558 * 61.75099 * 12 11 10 26 26 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46855 * 300.00341 * 1 2 3 28 28 H 1.08996 * 109.46973 * 60.00221 * 1 2 3 29 29 H 1.08999 * 109.46855 * 239.99659 * 2 1 3 30 30 H 1.09006 * 109.46929 * 119.99950 * 2 1 3 31 31 H 1.09000 * 109.47193 * 59.99176 * 6 4 3 32 32 H 1.09007 * 109.46697 * 299.99574 * 6 4 3 33 33 H 1.09002 * 109.52103 * 302.31010 * 9 7 6 34 34 H 1.09002 * 109.52596 * 62.43372 * 9 7 6 35 35 H 1.09002 * 109.50847 * 297.72153 * 10 9 7 36 36 H 1.08999 * 109.49525 * 177.60460 * 10 9 7 37 37 H 1.09005 * 109.46427 * 180.79675 * 11 10 9 38 38 H 1.09005 * 109.46559 * 60.81888 * 11 10 9 39 39 H 0.97001 * 120.00394 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.47053 * 182.21496 * 23 13 12 41 41 H 1.08998 * 109.46695 * 302.21755 * 23 13 12 42 42 H 1.09007 * 109.46784 * 174.69825 * 24 23 13 43 43 H 1.09001 * 109.47285 * 294.69644 * 24 23 13 44 44 H 1.08998 * 109.47083 * 54.70077 * 24 23 13 45 45 H 1.08997 * 109.46543 * 58.27342 * 25 12 11 46 46 H 1.09001 * 109.45818 * 178.24434 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8572 -0.0001 8 1 5.7818 2.2485 -0.8407 9 6 5.9276 2.2252 1.3098 10 6 7.4586 2.2038 1.3271 11 6 7.9857 3.6311 1.1636 12 7 7.5007 4.1910 -0.1043 13 6 8.0985 5.5081 -0.3611 14 1 7.7133 5.9050 -1.3003 15 6 7.7460 6.4475 0.7634 16 1 7.1385 6.1010 1.5862 17 6 8.1985 7.7497 0.7411 18 7 8.9380 8.1720 -0.2611 19 14 7.7611 8.9144 2.1345 20 1 8.2858 8.3741 3.4144 21 1 8.3645 10.2462 1.8744 22 1 6.2848 9.0491 2.2222 23 6 9.6195 5.3690 -0.4517 24 6 9.9791 4.4589 -1.6278 25 6 6.0343 4.2655 -0.1253 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.5853 3.4690 0.8904 32 1 3.5846 3.4699 -0.8896 33 1 5.5618 2.8122 2.1524 34 1 5.5472 1.2064 1.3832 35 1 7.8232 1.5849 0.5072 36 1 7.8060 1.7939 2.2755 37 1 9.0757 3.6177 1.1613 38 1 7.6319 4.2460 1.9912 39 1 9.2567 9.0880 -0.2766 40 1 10.0658 6.3518 -0.6030 41 1 10.0003 4.9353 0.4730 42 1 11.0620 4.4348 -1.7507 43 1 9.6131 3.4509 -1.4325 44 1 9.5186 4.8426 -2.5382 45 1 5.6897 4.8775 0.7082 46 1 5.7068 4.7128 -1.0638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:26 Heat of formation + Delta-G solvation = -106.759500 kcal Electronic energy + Delta-G solvation = -23513.231640 eV Core-core repulsion = 20209.049424 eV Total energy + Delta-G solvation = -3304.182216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57572 -38.57691 -36.74083 -34.92276 -32.51042 -31.89808 -31.34692 -30.64225 -27.40445 -26.47132 -23.87962 -23.51744 -22.21890 -21.93836 -20.74414 -19.25697 -18.81331 -17.61557 -16.73252 -16.37237 -16.06468 -15.34555 -14.69782 -14.41856 -14.10134 -13.77192 -13.42153 -13.23145 -13.19702 -12.85114 -12.77922 -12.59882 -12.23332 -11.86106 -11.75565 -11.71492 -11.39250 -11.24333 -11.12359 -10.89912 -10.69635 -10.66628 -10.48051 -10.44818 -10.35007 -10.01321 -9.94835 -9.67200 -9.55363 -9.18858 -9.01468 -8.34520 -7.06288 -5.96892 -4.10639 2.25797 2.63832 3.27809 3.33408 3.35713 4.40098 4.65368 4.69286 4.78841 4.84943 5.03431 5.09007 5.26797 5.29406 5.41789 5.51847 5.52459 5.62878 5.70763 5.71066 5.87155 6.02072 6.14126 6.20715 6.35406 6.36617 6.41063 6.49390 6.53074 6.57045 6.62546 6.71387 6.82075 6.86419 7.00897 7.14646 7.23298 7.38385 7.64454 7.78961 7.80192 8.02422 8.19869 8.37385 8.51017 8.99931 9.56848 11.01822 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.004027 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.243561 B = 6951.877470 C = 7657.118768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.503 6.503 6 C -0.109 4.109 7 C -0.073 4.073 8 H 0.082 0.918 9 C -0.117 4.117 10 C -0.114 4.114 11 C 0.060 3.940 12 N -0.532 5.532 13 C 0.215 3.785 14 H 0.038 0.962 15 C -0.543 4.543 16 H 0.055 0.945 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.112 4.112 24 C -0.137 4.137 25 C 0.072 3.928 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.024 0.976 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -12.644 0.541 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.306 3.694 5 O -0.390 6.390 6 C -0.147 4.147 7 C -0.092 4.092 8 H 0.100 0.900 9 C -0.155 4.155 10 C -0.152 4.152 11 C -0.068 4.068 12 N -0.256 5.256 13 C 0.109 3.891 14 H 0.056 0.944 15 C -0.582 4.582 16 H 0.073 0.927 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.150 4.150 24 C -0.194 4.194 25 C -0.057 4.057 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.287 -13.100 0.083 17.292 hybrid contribution -0.495 1.178 1.474 1.950 sum -11.782 -11.922 1.557 16.833 Atomic orbital electron populations 1.21802 0.92821 1.02801 1.03516 1.22973 0.95223 0.80657 1.02479 1.86531 1.25225 1.32035 1.84311 1.24003 0.80079 0.93313 0.72016 1.90638 1.60090 1.43340 1.44950 1.21534 0.97352 0.90075 1.05760 1.21095 0.89843 0.98708 0.99587 0.89985 1.21710 0.96651 1.00775 0.96341 1.21587 0.94966 0.98092 1.00576 1.21932 0.99813 0.92985 0.92109 1.62347 1.04594 1.27273 1.31400 1.19267 0.91108 0.82677 0.96061 0.94416 1.21712 1.32623 0.96138 1.07723 0.92674 1.24901 0.94857 0.98021 0.95588 1.69865 1.35081 1.16971 1.30497 0.86764 0.78654 0.80289 0.82911 1.20393 1.21273 1.20396 1.21625 0.98328 1.00182 0.94907 1.21697 0.97843 1.00284 0.99591 1.21809 0.90134 0.92888 1.00881 0.90410 0.91516 0.91483 0.91349 0.91392 0.87827 0.87606 0.93079 0.91368 0.91913 0.92861 0.91255 0.94749 0.92868 0.89075 0.94768 0.95696 0.93497 0.94181 0.94416 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.38 10.22 -39.27 -0.40 -4.78 16 4 C 0.46 6.22 7.69 36.00 0.28 6.50 16 5 O -0.50 -7.96 13.73 -18.75 -0.26 -8.22 16 6 C -0.11 -1.38 5.29 -27.89 -0.15 -1.53 16 7 C -0.07 -1.14 2.00 -90.54 -0.18 -1.32 16 8 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 9 C -0.12 -1.84 5.00 -26.61 -0.13 -1.97 16 10 C -0.11 -1.89 6.09 -26.65 -0.16 -2.05 16 11 C 0.06 1.17 4.80 -3.84 -0.02 1.16 16 12 N -0.53 -11.02 4.08 -228.08 -0.93 -11.95 16 13 C 0.22 5.20 1.78 -68.86 -0.12 5.08 16 14 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 15 C -0.54 -14.22 7.19 -34.44 -0.25 -14.47 16 16 H 0.06 1.45 5.84 -52.49 -0.31 1.15 16 17 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 18 N -0.89 -24.63 11.31 55.43 0.63 -24.01 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C -0.11 -2.64 4.97 -26.73 -0.13 -2.77 16 24 C -0.14 -2.79 9.70 37.16 0.36 -2.43 16 25 C 0.07 1.33 4.40 -3.84 -0.02 1.31 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.08 6.03 -51.93 -0.31 0.76 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.40 5.98 -51.93 -0.31 1.09 16 38 H 0.03 0.73 6.63 -51.93 -0.34 0.39 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 2.40 6.01 -51.93 -0.31 2.08 16 41 H 0.03 0.80 6.18 -51.93 -0.32 0.47 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.92 7.83 -51.93 -0.41 0.52 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.75 6.95 -51.93 -0.36 0.39 16 46 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -28.56 352.45 -8.81 -37.37 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.14 Total: 0.98 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.01 Total: -10.58 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.30 Total: -35.96 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.66 Total: -13.00 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.56 -8.81 -37.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.385 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds