Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47305 * 2 1 4 4 C 1.34233 * 117.00034 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00237 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47404 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.53833 * 54.89295 * 7 6 4 9 9 C 1.53119 * 109.49963 * 294.80029 * 7 6 4 10 10 C 1.53124 * 109.15284 * 182.40003 * 9 7 6 11 11 C 1.53032 * 109.27658 * 57.66779 * 10 9 7 12 12 N 1.46850 * 109.51651 * 300.80602 * 11 10 9 13 13 C 1.46907 * 110.99948 * 185.84621 * 12 11 10 14 14 H 1.08996 * 109.46680 * 180.65270 * 13 12 11 15 15 C 1.50703 * 109.46897 * 300.65302 * 13 12 11 16 16 H 1.07990 * 120.00059 * 359.97438 * 15 13 12 17 17 C 1.37874 * 119.99459 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00572 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99757 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47133 * 59.99809 * 19 17 15 21 21 H 1.48502 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47410 * 299.99692 * 19 17 15 23 23 C 1.53001 * 109.47143 * 60.65321 * 13 12 11 24 24 C 1.53002 * 109.46891 * 62.21284 * 23 13 12 25 25 C 1.46845 * 111.19558 * 61.75099 * 12 11 10 26 26 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46855 * 300.00341 * 1 2 3 28 28 H 1.08996 * 109.46973 * 60.00221 * 1 2 3 29 29 H 1.08999 * 109.46855 * 239.99659 * 2 1 3 30 30 H 1.09006 * 109.46929 * 119.99950 * 2 1 3 31 31 H 1.09000 * 109.47193 * 59.99176 * 6 4 3 32 32 H 1.09007 * 109.46697 * 299.99574 * 6 4 3 33 33 H 1.09002 * 109.52103 * 302.31010 * 9 7 6 34 34 H 1.09002 * 109.52596 * 62.43372 * 9 7 6 35 35 H 1.09002 * 109.50847 * 297.72153 * 10 9 7 36 36 H 1.08999 * 109.49525 * 177.60460 * 10 9 7 37 37 H 1.09005 * 109.46427 * 180.79675 * 11 10 9 38 38 H 1.09005 * 109.46559 * 60.81888 * 11 10 9 39 39 H 0.97001 * 120.00394 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.47053 * 182.21496 * 23 13 12 41 41 H 1.08998 * 109.46695 * 302.21755 * 23 13 12 42 42 H 1.09007 * 109.46784 * 174.69825 * 24 23 13 43 43 H 1.09001 * 109.47285 * 294.69644 * 24 23 13 44 44 H 1.08998 * 109.47083 * 54.70077 * 24 23 13 45 45 H 1.08997 * 109.46543 * 58.27342 * 25 12 11 46 46 H 1.09001 * 109.45818 * 178.24434 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8572 -0.0001 8 1 5.7818 2.2485 -0.8407 9 6 5.9276 2.2252 1.3098 10 6 7.4586 2.2038 1.3271 11 6 7.9857 3.6311 1.1636 12 7 7.5007 4.1910 -0.1043 13 6 8.0985 5.5081 -0.3611 14 1 7.7133 5.9050 -1.3003 15 6 7.7460 6.4475 0.7634 16 1 7.1385 6.1010 1.5862 17 6 8.1985 7.7497 0.7411 18 7 8.9380 8.1720 -0.2611 19 14 7.7611 8.9144 2.1345 20 1 8.2858 8.3741 3.4144 21 1 8.3645 10.2462 1.8744 22 1 6.2848 9.0491 2.2222 23 6 9.6195 5.3690 -0.4517 24 6 9.9791 4.4589 -1.6278 25 6 6.0343 4.2655 -0.1253 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.5853 3.4690 0.8904 32 1 3.5846 3.4699 -0.8896 33 1 5.5618 2.8122 2.1524 34 1 5.5472 1.2064 1.3832 35 1 7.8232 1.5849 0.5072 36 1 7.8060 1.7939 2.2755 37 1 9.0757 3.6177 1.1613 38 1 7.6319 4.2460 1.9912 39 1 9.2567 9.0880 -0.2766 40 1 10.0658 6.3518 -0.6030 41 1 10.0003 4.9353 0.4730 42 1 11.0620 4.4348 -1.7507 43 1 9.6131 3.4509 -1.4325 44 1 9.5186 4.8426 -2.5382 45 1 5.6897 4.8775 0.7082 46 1 5.7068 4.7128 -1.0638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = -121.623858 kcal Electronic energy + Delta-G solvation = -23513.876207 eV Core-core repulsion = 20209.049424 eV Total energy + Delta-G solvation = -3304.826783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63147 -40.07167 -37.84201 -36.50779 -34.15146 -33.18560 -32.43999 -32.27989 -28.74822 -28.28185 -25.59174 -24.51124 -23.74559 -23.22611 -21.94877 -20.66483 -20.56708 -18.67323 -18.21396 -17.64780 -17.25898 -17.08071 -16.21813 -15.77669 -15.38401 -15.12650 -14.99631 -14.52855 -14.48998 -14.43502 -13.95122 -13.64543 -13.46948 -13.21249 -13.09504 -12.97100 -12.84260 -12.72992 -12.61204 -12.47811 -12.44965 -12.08535 -11.86999 -11.73323 -11.63863 -11.57137 -11.49719 -11.38136 -11.11785 -10.94110 -10.69872 -10.39257 -8.85486 -7.99066 -6.22312 1.22066 1.39585 1.40725 1.47525 1.71733 2.42200 3.18294 3.42002 3.67581 3.90189 3.99552 4.03116 4.11012 4.19139 4.32766 4.37282 4.50461 4.56365 4.61159 4.67638 4.73042 4.75817 4.84082 4.89101 4.93409 4.93995 5.02884 5.06521 5.08439 5.13247 5.20633 5.29655 5.34553 5.40643 5.44861 5.52797 5.54975 5.57907 5.68172 5.83147 6.10127 6.25711 6.44760 6.75049 6.79008 6.99787 7.48637 8.94876 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.004027 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.243561 B = 6951.877470 C = 7657.118768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.468 3.532 5 O -0.530 6.530 6 C -0.106 4.106 7 C -0.062 4.062 8 H 0.072 0.928 9 C -0.113 4.113 10 C -0.107 4.107 11 C 0.064 3.936 12 N -0.532 5.532 13 C 0.221 3.779 14 H 0.005 0.995 15 C -0.550 4.550 16 H 0.050 0.950 17 C 0.022 3.978 18 N -0.912 5.912 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.107 4.107 24 C -0.124 4.124 25 C 0.074 3.926 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.034 0.966 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.114 -13.750 1.221 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.313 3.687 5 O -0.420 6.420 6 C -0.143 4.143 7 C -0.081 4.081 8 H 0.090 0.910 9 C -0.150 4.150 10 C -0.145 4.145 11 C -0.064 4.064 12 N -0.256 5.256 13 C 0.114 3.886 14 H 0.023 0.977 15 C -0.589 4.589 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.551 5.551 19 Si 0.770 3.230 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.146 4.146 24 C -0.182 4.182 25 C -0.055 4.055 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.685 -14.217 0.767 19.069 hybrid contribution -0.101 1.485 1.246 1.941 sum -12.786 -12.731 2.013 18.156 Atomic orbital electron populations 1.21822 0.90545 1.04302 1.03666 1.23267 0.97012 0.79388 1.02478 1.86523 1.24223 1.33639 1.83815 1.23980 0.80449 0.93029 0.71258 1.90629 1.60767 1.44156 1.46416 1.21464 0.95141 0.90322 1.07406 1.20904 0.91843 0.96104 0.99244 0.90975 1.21674 0.95888 1.01061 0.96390 1.21532 0.95604 0.95701 1.01620 1.21913 0.99303 0.94540 0.90630 1.62301 1.05959 1.25137 1.32194 1.19031 0.91636 0.84021 0.93891 0.97715 1.21947 1.32220 0.96749 1.07958 0.93166 1.25589 0.94958 0.99546 0.97658 1.69995 1.35949 1.17160 1.31980 0.85839 0.78526 0.78379 0.80247 1.20133 1.21067 1.19823 1.21472 0.97698 0.99267 0.96127 1.21552 0.99084 0.99708 0.97810 1.21825 0.88790 0.94811 1.00052 0.88240 0.91347 0.91314 0.91424 0.91413 0.86347 0.85848 0.92729 0.90878 0.91933 0.90919 0.92180 0.96656 0.92994 0.92015 0.95013 0.93783 0.92666 0.94719 0.95795 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.36 -8.10 10.22 -51.45 -0.53 -8.63 16 4 C 0.47 11.80 7.69 71.23 0.55 12.34 16 5 O -0.53 -16.03 13.73 21.95 0.30 -15.73 16 6 C -0.11 -2.48 5.29 29.85 0.16 -2.32 16 7 C -0.06 -1.85 2.00 -10.74 -0.02 -1.87 16 8 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 9 C -0.11 -3.34 5.00 30.68 0.15 -3.19 16 10 C -0.11 -3.37 6.09 30.65 0.19 -3.18 16 11 C 0.06 2.50 4.80 86.32 0.41 2.92 16 12 N -0.53 -22.15 4.08 -875.50 -3.57 -25.71 16 13 C 0.22 10.94 1.78 44.17 0.08 11.01 16 14 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 15 C -0.55 -29.25 7.19 25.60 0.18 -29.07 16 16 H 0.05 2.68 5.84 -2.92 -0.02 2.66 16 17 C 0.02 1.21 5.30 84.65 0.45 1.66 16 18 N -0.91 -51.70 11.31 21.45 0.24 -51.45 16 19 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.11 -5.12 4.97 30.60 0.15 -4.97 16 24 C -0.12 -5.02 9.70 71.98 0.70 -4.32 16 25 C 0.07 2.72 4.40 86.33 0.38 3.10 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 31 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.16 6.03 -2.39 -0.01 2.15 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.42 5.98 -2.38 -0.01 2.40 16 38 H 0.02 0.65 6.63 -2.38 -0.02 0.63 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.06 3.33 6.01 -2.39 -0.01 3.31 16 41 H 0.03 1.49 6.18 -2.39 -0.01 1.48 16 42 H 0.04 1.58 8.14 -2.38 -0.02 1.57 16 43 H 0.05 2.12 7.83 -2.39 -0.02 2.10 16 44 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.02 0.95 6.95 -2.39 -0.02 0.93 16 46 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 Total: -1.00 -61.36 352.45 3.98 -57.38 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.93 Total: 16.49 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.57 Total: -17.43 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.33 Total: -77.17 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.22 Total: -24.36 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.36 3.98 -57.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.242 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds