Wall clock time and date at job start Tue Mar 31 2020 07:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46933 * 2 1 4 4 C 1.34228 * 116.99820 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00009 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47236 * 179.97438 * 6 4 3 8 8 C 1.53109 * 109.52243 * 174.99743 * 7 6 4 9 9 C 1.53040 * 109.28106 * 177.56147 * 8 7 6 10 10 N 1.46851 * 109.51934 * 300.82625 * 9 8 7 11 11 C 1.46906 * 110.99565 * 185.83766 * 10 9 8 12 12 H 1.08997 * 109.47107 * 186.78787 * 11 10 9 13 13 C 1.50702 * 109.46852 * 306.78482 * 11 10 9 14 14 H 1.07993 * 120.00418 * 0.02562 * 13 11 10 15 15 C 1.37882 * 119.99616 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00041 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47163 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47281 * 119.99653 * 17 15 13 20 20 H 1.48495 * 109.47189 * 239.99830 * 17 15 13 21 21 C 1.52998 * 109.47116 * 66.78806 * 11 10 9 22 22 C 1.52996 * 109.47258 * 63.20819 * 21 11 10 23 23 C 1.46838 * 111.20076 * 61.73898 * 10 9 8 24 24 C 1.53032 * 109.52453 * 298.25516 * 23 10 9 25 25 H 1.08993 * 109.47034 * 60.00136 * 1 2 3 26 26 H 1.08999 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47301 * 299.99717 * 1 2 3 28 28 H 1.08994 * 109.47285 * 239.99550 * 2 1 3 29 29 H 1.09004 * 109.47287 * 119.99525 * 2 1 3 30 30 H 1.08995 * 109.46822 * 60.00004 * 6 4 3 31 31 H 1.08998 * 109.46861 * 299.99935 * 6 4 3 32 32 H 1.09007 * 109.56735 * 54.84147 * 7 6 4 33 33 H 1.09004 * 109.50238 * 57.62479 * 8 7 6 34 34 H 1.08999 * 109.50954 * 297.50472 * 8 7 6 35 35 H 1.08998 * 109.46251 * 60.83454 * 9 8 7 36 36 H 1.08998 * 109.46328 * 180.80909 * 9 8 7 37 37 H 0.97002 * 120.00140 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46808 * 183.20664 * 21 11 10 39 39 H 1.09004 * 109.47309 * 303.20302 * 21 11 10 40 40 H 1.09000 * 109.47096 * 304.77589 * 22 21 11 41 41 H 1.09002 * 109.47346 * 64.77595 * 22 21 11 42 42 H 1.08999 * 109.47168 * 184.77221 * 22 21 11 43 43 H 1.09009 * 109.46398 * 58.27542 * 23 10 9 44 44 H 1.09001 * 109.46319 * 178.24151 * 23 10 9 45 45 H 1.09006 * 109.50468 * 179.11936 * 24 23 10 46 46 H 1.09002 * 109.50730 * 299.24186 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 6 6.0348 4.2662 -0.1275 9 6 7.5618 4.1856 -0.0656 10 7 7.9699 3.5786 1.2077 11 6 9.4305 3.6111 1.3621 12 1 9.7143 3.0503 2.2527 13 6 10.0776 2.9910 0.1506 14 1 9.4652 2.6111 -0.6538 15 6 11.4515 2.9086 0.0691 16 7 12.1973 3.3716 1.0484 17 14 12.2537 2.1406 -1.4329 18 1 11.2024 1.7008 -2.3851 19 1 13.1314 3.1411 -2.0914 20 1 13.0649 0.9687 -1.0161 21 6 9.8963 5.0616 1.5029 22 6 9.3026 5.6666 2.7767 23 6 7.4581 2.2078 1.3307 24 6 5.9281 2.2294 1.3105 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.5851 3.4698 0.8888 31 1 3.5845 3.4693 -0.8912 32 1 5.7823 2.2473 -0.8405 33 1 5.6698 4.8870 0.6907 34 1 5.7317 4.7025 -1.0793 35 1 7.9271 3.5760 -0.8921 36 1 7.9818 5.1886 -0.1410 37 1 13.1639 3.3139 0.9910 38 1 10.9844 5.0898 1.5603 39 1 9.5631 5.6358 0.6384 40 1 8.2178 5.5617 2.7573 41 1 9.7025 5.1460 3.6468 42 1 9.5645 6.7231 2.8334 43 1 7.8239 1.6074 0.4976 44 1 7.8028 1.7742 2.2695 45 1 5.5487 1.2103 1.3861 46 1 5.5613 2.8182 2.1513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:12 Heat of formation + Delta-G solvation = -106.491542 kcal Electronic energy + Delta-G solvation = -23418.584861 eV Core-core repulsion = 20114.414264 eV Total energy + Delta-G solvation = -3304.170597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61106 -38.55056 -36.77589 -35.06331 -32.50549 -31.91445 -31.15547 -30.08714 -28.54146 -26.10559 -23.94629 -22.98925 -22.60275 -21.86166 -20.60303 -19.43167 -18.89796 -17.64584 -16.76655 -16.38436 -16.06906 -15.28924 -14.70059 -14.31827 -14.01575 -13.96699 -13.47033 -13.32176 -13.23974 -12.86262 -12.74220 -12.38806 -12.24351 -11.87779 -11.81557 -11.74654 -11.48377 -11.23854 -11.07651 -10.83426 -10.73141 -10.65069 -10.62047 -10.38977 -10.30995 -10.09760 -9.86621 -9.65194 -9.55346 -9.17699 -8.99130 -8.32121 -7.02240 -5.94423 -4.07411 2.22329 2.60090 3.28119 3.36771 3.40611 4.43182 4.60600 4.67322 4.75640 4.87884 4.99185 5.02672 5.18313 5.29769 5.30084 5.49049 5.49547 5.60892 5.62622 5.68491 5.90838 5.93076 6.16132 6.23577 6.27700 6.35293 6.41991 6.52361 6.56771 6.59120 6.65548 6.71941 6.80782 6.86924 7.00443 7.17836 7.24542 7.43819 7.67343 7.76933 7.82084 8.05894 8.22785 8.40762 8.55734 9.03864 9.60055 11.04554 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.003823 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.993762 B = 7321.740206 C = 8022.736997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.365 6.365 4 C 0.459 3.541 5 O -0.499 6.499 6 C -0.107 4.107 7 C -0.076 4.076 8 C -0.110 4.110 9 C 0.063 3.937 10 N -0.534 5.534 11 C 0.213 3.787 12 H 0.036 0.964 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.885 3.115 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.109 4.109 22 C -0.139 4.139 23 C 0.066 3.934 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.260 0.740 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.710 -1.128 -1.265 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.386 6.386 6 C -0.145 4.145 7 C -0.094 4.094 8 C -0.148 4.148 9 C -0.066 4.066 10 N -0.258 5.258 11 C 0.107 3.893 12 H 0.054 0.946 13 C -0.579 4.579 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.713 3.287 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.148 4.148 22 C -0.196 4.196 23 C -0.062 4.062 24 C -0.152 4.152 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.518 -1.155 -0.822 19.569 hybrid contribution 0.964 -1.151 -1.526 2.141 sum -18.554 -2.306 -2.348 18.843 Atomic orbital electron populations 1.21799 0.92804 1.02852 1.03436 1.22984 0.95202 0.80591 1.02595 1.86515 1.25211 1.32128 1.84377 1.24011 0.80140 0.93374 0.72291 1.90671 1.60052 1.43293 1.44552 1.21585 0.97312 0.90167 1.05410 1.21077 0.90163 0.98105 1.00072 1.21689 0.97298 0.94975 1.00836 1.21863 0.92101 1.00063 0.92545 1.62397 1.14924 1.16971 1.31520 1.19253 0.80687 0.93334 0.96048 0.94582 1.21810 0.91832 1.39191 1.05098 0.92475 1.24910 0.97434 0.95207 0.95924 1.69887 1.04937 1.46119 1.31563 0.86647 0.79471 0.79098 0.83443 1.19967 1.21037 1.21073 1.21577 1.02880 0.96307 0.94014 1.21718 1.00846 0.97700 0.99365 1.21785 0.92610 0.91272 1.00562 1.21784 0.96983 1.00578 0.95896 0.91557 0.90373 0.91506 0.91355 0.91270 0.87757 0.88034 0.90746 0.91613 0.92544 0.94467 0.91168 0.93031 0.89149 0.94952 0.93049 0.94433 0.95730 0.94815 0.92070 0.91261 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -4.20 10.22 -39.25 -0.40 -4.60 16 4 C 0.46 5.98 7.69 36.01 0.28 6.25 16 5 O -0.50 -8.04 13.75 -18.75 -0.26 -8.30 16 6 C -0.11 -1.21 5.29 -27.88 -0.15 -1.35 16 7 C -0.08 -1.10 1.90 -90.50 -0.17 -1.27 16 8 C -0.11 -1.62 5.38 -26.65 -0.14 -1.77 16 9 C 0.06 1.21 4.77 -3.83 -0.02 1.19 16 10 N -0.53 -11.20 3.89 -228.08 -0.89 -12.09 16 11 C 0.21 5.26 1.72 -68.86 -0.12 5.14 16 12 H 0.04 1.00 7.97 -51.93 -0.41 0.58 16 13 C -0.54 -14.54 7.24 -34.44 -0.25 -14.79 16 14 H 0.06 1.56 5.84 -52.49 -0.31 1.26 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.89 -25.12 11.30 55.43 0.63 -24.49 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.11 -2.59 5.14 -26.73 -0.14 -2.73 16 22 C -0.14 -2.83 9.85 37.16 0.37 -2.47 16 23 C 0.07 1.33 5.20 -3.84 -0.02 1.31 16 24 C -0.11 -1.87 5.09 -26.65 -0.14 -2.01 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.22 7.95 -51.92 -0.41 0.80 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 36 H 0.07 1.39 6.20 -51.93 -0.32 1.07 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 39 H 0.03 0.75 6.33 -51.93 -0.33 0.42 16 40 H 0.05 1.01 7.56 -51.93 -0.39 0.61 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.03 0.75 7.36 -51.92 -0.38 0.37 16 44 H 0.06 1.25 8.00 -51.93 -0.42 0.83 16 45 H 0.07 1.16 6.05 -51.93 -0.31 0.85 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -29.49 352.64 -8.74 -38.24 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.14 Total: 0.06 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 0.02 Total: -10.54 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.26 Total: -36.58 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.66 Total: -12.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.49 -8.74 -38.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.256 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds